Wall clock time and date at job start Mon Mar 30 2020 01:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38166 * 119.97281 * 2 1 4 4 C 1.38702 * 119.94657 * 179.97438 * 3 2 1 5 5 O 1.35902 * 120.06089 * 180.02562 * 4 3 2 6 6 C 1.38754 * 119.89148 * 0.02562 * 4 3 2 7 7 C 1.38130 * 119.93952 * 359.97438 * 6 4 3 8 8 C 1.50701 * 119.96934 * 180.02562 * 7 6 4 9 9 N 1.46897 * 109.46821 * 90.00470 * 8 7 6 10 10 C 1.46847 * 111.00423 * 45.78754 * 9 8 7 11 11 C 1.53039 * 109.52301 * 185.83887 * 10 9 8 12 12 C 1.53119 * 109.27858 * 300.81649 * 11 10 9 13 13 C 1.53127 * 109.15705 * 57.65769 * 12 11 10 14 14 H 1.09003 * 109.50156 * 62.28420 * 13 12 11 15 15 C 1.50699 * 109.50142 * 182.40160 * 13 12 11 16 16 H 1.07994 * 120.00244 * 119.80388 * 15 13 12 17 17 C 1.37878 * 119.99773 * 299.80455 * 15 13 12 18 18 N 1.31510 * 120.00375 * 359.97438 * 17 15 13 19 19 Si 1.86801 * 119.99818 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47230 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.46908 * 119.99570 * 19 17 15 22 22 H 1.48496 * 109.47687 * 239.99687 * 19 17 15 23 23 C 1.46850 * 110.99805 * 169.99886 * 9 8 7 24 24 C 1.38247 * 119.97032 * 179.72251 * 2 1 3 25 25 H 1.09002 * 109.47152 * 89.99940 * 1 2 3 26 26 H 1.09001 * 109.46980 * 330.00040 * 1 2 3 27 27 H 1.09004 * 109.47113 * 210.00021 * 1 2 3 28 28 H 1.08008 * 120.02383 * 0.02562 * 3 2 1 29 29 H 0.96705 * 113.99912 * 89.99970 * 5 4 3 30 30 H 1.08001 * 120.03481 * 180.02562 * 6 4 3 31 31 H 1.09008 * 109.46627 * 210.00029 * 8 7 6 32 32 H 1.08999 * 109.47402 * 329.99951 * 8 7 6 33 33 H 1.08998 * 109.45864 * 305.85400 * 10 9 8 34 34 H 1.09002 * 109.45973 * 65.82151 * 10 9 8 35 35 H 1.09004 * 109.49738 * 180.87874 * 11 10 9 36 36 H 1.08999 * 109.53308 * 60.78011 * 11 10 9 37 37 H 1.08994 * 109.52753 * 297.75137 * 12 11 10 38 38 H 1.08995 * 109.51885 * 177.55792 * 12 11 10 39 39 H 0.97005 * 120.00553 * 179.97438 * 18 17 15 40 40 H 1.09001 * 109.46383 * 294.17449 * 23 9 8 41 41 H 1.08996 * 109.46260 * 54.14392 * 23 9 8 42 42 H 1.07991 * 119.94451 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1969 0.0000 4 6 3.5843 1.1962 0.0005 5 8 4.2656 2.3722 0.0011 6 6 4.2753 -0.0070 0.0005 7 6 3.5805 -1.2009 0.0005 8 6 4.3303 -2.5082 0.0011 9 7 4.5732 -2.9326 1.3863 10 6 3.3594 -2.7917 2.2006 11 6 3.6856 -3.1026 3.6631 12 6 4.2296 -4.5302 3.7672 13 6 5.4650 -4.6637 2.8725 14 1 6.2431 -3.9855 3.2230 15 6 5.9722 -6.0818 2.9233 16 1 6.0204 -6.6708 2.0194 17 6 6.3745 -6.6274 4.1240 18 7 6.3162 -5.9101 5.2247 19 14 7.0025 -8.3856 4.1872 20 1 6.9694 -8.9724 2.8234 21 1 8.3977 -8.3949 4.6957 22 1 6.1403 -9.1870 5.0924 23 6 5.0872 -4.3074 1.4329 24 6 2.1976 -1.1976 0.0058 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 0.8900 0.5138 27 1 -0.3633 -0.8900 0.5139 28 1 1.6572 2.1322 0.0004 29 1 4.4624 2.7123 0.8847 30 1 5.3553 -0.0102 0.0014 31 1 3.7391 -3.2662 -0.5128 32 1 5.2833 -2.3807 -0.5124 33 1 2.9852 -1.7710 2.1210 34 1 2.5992 -3.4859 1.8424 35 1 2.7810 -3.0131 4.2646 36 1 4.4355 -2.4000 4.0266 37 1 3.4656 -5.2358 3.4410 38 1 4.5039 -4.7409 4.8008 39 1 6.5990 -6.2940 6.0695 40 1 4.3190 -4.9946 1.0784 41 1 5.9680 -4.3877 0.7959 42 1 1.6563 -2.1320 0.0107 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232882783.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:12 Heat of formation + Delta-G solvation = -49.300365 kcal Electronic energy + Delta-G solvation = -21357.418973 eV Core-core repulsion = 18300.807380 eV Total energy + Delta-G solvation = -3056.611593 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.10089 -39.65137 -37.84387 -35.82470 -34.19871 -32.79163 -31.78283 -30.79742 -27.96364 -27.18705 -26.88912 -23.79625 -23.28143 -22.93534 -21.29139 -20.31599 -18.77213 -18.37669 -17.20425 -16.99371 -16.84425 -16.46222 -16.07541 -15.54815 -15.04763 -14.86244 -14.53833 -14.48774 -14.18479 -14.02857 -13.63581 -13.44501 -13.33470 -13.08653 -12.86029 -12.71965 -12.60757 -12.48335 -12.28077 -12.22381 -11.77740 -11.73118 -11.45806 -11.32877 -10.86486 -10.66239 -10.38224 -9.67291 -9.46297 -9.09045 -8.07815 -6.21973 0.28300 0.36181 1.40630 1.42458 1.53691 2.42590 2.57583 3.19395 3.23914 3.31144 3.72992 3.88062 4.16320 4.20033 4.24790 4.34662 4.38069 4.40180 4.50794 4.60351 4.64459 4.70156 4.75865 4.85707 4.88574 4.94182 4.97568 5.05405 5.12001 5.17558 5.26675 5.37911 5.45266 5.51411 5.55874 5.63860 5.65671 5.90953 5.96550 6.12153 6.20416 6.31009 6.45595 6.86356 6.90810 7.46075 8.97169 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.031988 B = 0.003816 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.124879 B = 7335.492479 C = 7533.965565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.071 4.071 3 C -0.152 4.152 4 C 0.102 3.898 5 O -0.510 6.510 6 C -0.147 4.147 7 C -0.061 4.061 8 C 0.092 3.908 9 N -0.541 5.541 10 C 0.069 3.931 11 C -0.111 4.111 12 C -0.103 4.103 13 C 0.053 3.947 14 H -0.004 1.004 15 C -0.535 4.535 16 H 0.052 0.948 17 C 0.014 3.986 18 N -0.916 5.916 19 Si 0.954 3.046 20 H -0.267 1.267 21 H -0.281 1.281 22 H -0.280 1.280 23 C 0.081 3.919 24 C -0.131 4.131 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.144 0.856 29 H 0.409 0.591 30 H 0.124 0.876 31 H 0.045 0.955 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.026 0.974 35 H 0.068 0.932 36 H 0.047 0.953 37 H 0.024 0.976 38 H 0.057 0.943 39 H 0.260 0.740 40 H 0.019 0.981 41 H 0.058 0.942 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.029 13.571 -9.538 19.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.072 4.072 3 C -0.171 4.171 4 C 0.058 3.942 5 O -0.323 6.323 6 C -0.166 4.166 7 C -0.062 4.062 8 C -0.035 4.035 9 N -0.266 5.266 10 C -0.059 4.059 11 C -0.149 4.149 12 C -0.141 4.141 13 C 0.034 3.966 14 H 0.014 0.986 15 C -0.574 4.574 16 H 0.070 0.930 17 C -0.184 4.184 18 N -0.555 5.555 19 Si 0.780 3.220 20 H -0.191 1.191 21 H -0.207 1.207 22 H -0.206 1.206 23 C -0.047 4.047 24 C -0.150 4.150 25 H 0.100 0.900 26 H 0.099 0.901 27 H 0.091 0.909 28 H 0.162 0.838 29 H 0.268 0.732 30 H 0.142 0.858 31 H 0.063 0.937 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.045 0.955 35 H 0.086 0.914 36 H 0.066 0.934 37 H 0.042 0.958 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.037 0.963 41 H 0.077 0.923 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -10.658 13.804 -9.765 19.987 hybrid contribution 0.299 -1.552 0.565 1.678 sum -10.359 12.252 -9.200 18.495 Atomic orbital electron populations 1.20850 0.88850 1.03830 1.03342 1.20032 0.97573 0.91858 0.97692 1.21470 0.93040 0.99130 1.03454 1.18511 0.90373 0.85111 1.00200 1.84745 1.76364 1.35779 1.35428 1.21348 1.00640 0.91696 1.02916 1.19611 0.93813 0.94106 0.98659 1.21113 0.99563 0.93015 0.89781 1.62073 1.30808 1.23978 1.09749 1.22075 0.90195 1.00556 0.93040 1.21597 1.00001 0.97326 0.95952 1.21453 0.96684 0.93915 1.02028 1.18588 0.93305 0.94168 0.90553 0.98587 1.21548 1.42763 0.99160 0.93930 0.92965 1.25716 0.95790 1.01521 0.95415 1.70045 1.48455 1.37884 0.99143 0.85562 0.77910 0.80299 0.78205 1.19136 1.20686 1.20588 1.22014 0.97553 0.86300 0.98792 1.21131 0.93152 0.98603 1.02112 0.89985 0.90149 0.90903 0.83792 0.73250 0.85831 0.93692 0.89897 0.89841 0.95535 0.91361 0.93437 0.95766 0.92421 0.93081 0.96326 0.92318 0.85513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.54 10.01 71.24 0.71 -0.82 16 2 C -0.07 -1.42 5.88 -19.88 -0.12 -1.54 16 3 C -0.15 -3.08 9.64 22.36 0.22 -2.86 16 4 C 0.10 2.37 6.70 22.50 0.15 2.52 16 5 O -0.51 -10.38 13.50 -92.45 -1.25 -11.63 16 6 C -0.15 -3.84 9.64 22.37 0.22 -3.62 16 7 C -0.06 -1.63 4.13 -19.88 -0.08 -1.71 16 8 C 0.09 2.74 5.43 85.56 0.46 3.21 16 9 N -0.54 -19.82 4.80 -900.92 -4.32 -24.15 16 10 C 0.07 2.37 4.57 86.33 0.39 2.76 16 11 C -0.11 -4.37 6.09 30.65 0.19 -4.18 16 12 C -0.10 -4.98 5.03 30.68 0.15 -4.83 16 13 C 0.05 2.72 2.26 -11.49 -0.03 2.69 16 14 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 15 C -0.54 -29.96 8.56 25.60 0.22 -29.74 16 16 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 17 C 0.01 0.80 5.30 84.66 0.45 1.25 16 18 N -0.92 -53.61 11.36 21.45 0.24 -53.36 16 19 Si 0.95 43.93 29.54 68.60 2.03 45.96 16 20 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 21 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 22 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 23 C 0.08 3.46 4.65 86.32 0.40 3.86 16 24 C -0.13 -3.06 7.42 22.28 0.17 -2.90 16 25 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.08 0.89 8.08 -2.39 -0.02 0.87 16 27 H 0.07 0.96 8.08 -2.38 -0.02 0.94 16 28 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 29 H 0.41 4.61 9.06 -74.05 -0.67 3.94 16 30 H 0.12 3.27 8.06 -2.91 -0.02 3.25 16 31 H 0.04 1.28 8.02 -2.38 -0.02 1.26 16 32 H 0.08 2.39 8.08 -2.39 -0.02 2.37 16 33 H 0.08 2.59 5.63 -2.39 -0.01 2.58 16 34 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 36 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.06 3.17 6.17 -2.39 -0.01 3.15 16 39 H 0.26 14.43 8.31 -92.70 -0.77 13.66 16 40 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.06 2.48 8.12 -2.39 -0.02 2.46 16 42 H 0.13 2.77 8.06 -2.92 -0.02 2.74 16 Total: -1.00 -64.66 334.32 0.53 -64.13 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: 0.33 Total: 14.97 kcal Atomic # 6 Polarization: -39.43 SS G_CDS: 3.50 Total: -35.93 kcal Atomic # 7 Polarization: -73.43 SS G_CDS: -4.08 Total: -77.51 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: -1.25 Total: -11.63 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -64.66 0.53 -64.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232882783.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.831 kcal (2) G-P(sol) polarization free energy of solvation -64.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds