Wall clock time and date at job start Mon Mar 30 2020 01:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38165 * 119.97727 * 2 1 4 4 C 1.38711 * 119.94450 * 179.72287 * 3 2 1 5 5 O 1.35899 * 120.05043 * 180.02562 * 4 3 2 6 6 C 1.38744 * 119.88994 * 0.02562 * 4 3 2 7 7 C 1.38123 * 119.94541 * 0.02562 * 6 4 3 8 8 C 1.50703 * 119.97187 * 180.02562 * 7 6 4 9 9 N 1.46898 * 109.47255 * 89.99504 * 8 7 6 10 10 C 1.46840 * 111.00281 * 294.20992 * 9 8 7 11 11 C 1.53032 * 109.52730 * 174.16139 * 10 9 8 12 12 C 1.53124 * 109.27938 * 59.17671 * 11 10 9 13 13 C 1.50697 * 109.57609 * 182.41069 * 12 11 10 14 14 H 1.07999 * 119.99878 * 119.71412 * 13 12 11 15 15 C 1.37869 * 120.00143 * 299.71674 * 13 12 11 16 16 N 1.31516 * 120.00218 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 120.00158 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.46946 * 90.00033 * 17 15 13 19 19 H 1.48496 * 109.47254 * 209.99917 * 17 15 13 20 20 H 1.48499 * 109.47054 * 330.00617 * 17 15 13 21 21 C 1.53123 * 109.15960 * 302.34883 * 12 11 10 22 22 C 1.46852 * 110.99827 * 169.99816 * 9 8 7 23 23 C 1.38244 * 119.96896 * 179.72465 * 2 1 3 24 24 H 1.08999 * 109.46919 * 89.99838 * 1 2 3 25 25 H 1.08998 * 109.47382 * 210.00239 * 1 2 3 26 26 H 1.08997 * 109.46933 * 330.00178 * 1 2 3 27 27 H 1.08000 * 120.02356 * 359.70386 * 3 2 1 28 28 H 0.96704 * 113.99561 * 90.00744 * 5 4 3 29 29 H 1.08000 * 120.02701 * 179.97438 * 6 4 3 30 30 H 1.09004 * 109.46824 * 209.99872 * 8 7 6 31 31 H 1.09001 * 109.47140 * 329.99453 * 8 7 6 32 32 H 1.08999 * 109.46363 * 294.17841 * 10 9 8 33 33 H 1.08998 * 109.46190 * 54.14030 * 10 9 8 34 34 H 1.09005 * 109.50312 * 299.23993 * 11 10 9 35 35 H 1.08993 * 109.54028 * 179.14000 * 11 10 9 36 36 H 1.08999 * 109.52248 * 62.25297 * 12 11 10 37 37 H 0.97000 * 120.00589 * 179.97438 * 16 15 13 38 38 H 1.08993 * 109.50602 * 297.71236 * 21 12 11 39 39 H 1.09000 * 109.53565 * 177.60974 * 21 12 11 40 40 H 1.09000 * 109.45955 * 305.85877 * 22 9 8 41 41 H 1.09002 * 109.45994 * 65.83917 * 22 9 8 42 42 H 1.08004 * 119.94705 * 0.25352 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1968 0.0000 4 6 3.5844 1.1960 0.0058 5 8 4.2656 2.3720 0.0064 6 6 4.2752 -0.0073 0.0111 7 6 3.5804 -1.2010 0.0100 8 6 4.3301 -2.5084 0.0163 9 7 4.5669 -2.9304 1.4033 10 6 5.4718 -1.9995 2.0894 11 6 5.5801 -2.3864 3.5661 12 6 6.1115 -3.8183 3.6759 13 6 6.1650 -4.2272 5.1253 14 1 5.5904 -5.0747 5.4688 15 6 6.9474 -3.5195 6.0129 16 7 7.6467 -2.4871 5.5947 17 14 7.0131 -4.0259 7.8097 18 1 8.1111 -5.0061 8.0079 19 1 7.2603 -2.8287 8.6528 20 1 5.7205 -4.6459 8.1969 21 6 5.1771 -4.7610 2.9123 22 6 5.0806 -4.3052 1.4546 23 6 2.1976 -1.1976 0.0058 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6574 2.1321 -0.0048 28 1 4.4592 2.7139 0.8900 29 1 5.3551 -0.0104 0.0152 30 1 3.7412 -3.2673 -0.4990 31 1 5.2854 -2.3819 -0.4932 32 1 6.4584 -2.0460 1.6285 33 1 5.0802 -0.9856 2.0074 34 1 4.5960 -2.3268 4.0310 35 1 6.2636 -1.7048 4.0723 36 1 7.1117 -3.8696 3.2458 37 1 8.1969 -1.9889 6.2192 38 1 4.1868 -4.7387 3.3669 39 1 5.5725 -5.7760 2.9508 40 1 4.4048 -4.9659 0.9115 41 1 6.0692 -4.3408 0.9968 42 1 1.6562 -2.1321 0.0061 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232884633.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:47 Heat of formation + Delta-G solvation = -32.358036 kcal Electronic energy + Delta-G solvation = -21339.970243 eV Core-core repulsion = 18284.093325 eV Total energy + Delta-G solvation = -3055.876918 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.96429 -38.18641 -36.83670 -34.34384 -32.66711 -31.16589 -29.88972 -29.75023 -27.00860 -26.56889 -24.43927 -22.38712 -21.85661 -21.39863 -20.34883 -18.56650 -17.75151 -16.38198 -16.24021 -15.96018 -15.32686 -15.04972 -14.44549 -14.19568 -13.93394 -13.62379 -13.24281 -12.89799 -12.77319 -12.64027 -12.45474 -12.24997 -11.89261 -11.68043 -11.49493 -11.35722 -11.16773 -10.94240 -10.71013 -10.56362 -10.30821 -10.20131 -9.95659 -9.41478 -8.96886 -8.72087 -8.61100 -8.46114 -8.27320 -7.74492 -5.95778 -4.00981 1.31719 1.34337 3.31999 3.38773 3.42434 3.56855 4.23049 4.46255 4.57843 4.76289 4.84753 5.15036 5.28198 5.33568 5.34582 5.43894 5.50090 5.54793 5.68432 5.74073 5.77857 5.91407 5.99057 6.08701 6.13240 6.23171 6.32300 6.44062 6.50511 6.63252 6.64043 6.69366 6.85595 6.87142 7.09113 7.17716 7.44964 7.62508 7.65910 7.69135 7.84484 8.06754 8.17494 8.50148 9.02720 9.63353 11.10443 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.021372 B = 0.004242 C = 0.004006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.827774 B = 6599.340561 C = 6987.815563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.075 4.075 3 C -0.151 4.151 4 C 0.105 3.895 5 O -0.503 6.503 6 C -0.141 4.141 7 C -0.046 4.046 8 C 0.089 3.911 9 N -0.529 5.529 10 C 0.054 3.946 11 C -0.103 4.103 12 C 0.047 3.953 13 C -0.510 4.510 14 H 0.054 0.946 15 C 0.061 3.939 16 N -0.893 5.893 17 Si 0.889 3.111 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.275 1.275 21 C -0.106 4.106 22 C 0.060 3.940 23 C -0.108 4.108 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.123 0.877 28 H 0.390 0.610 29 H 0.125 0.875 30 H 0.078 0.922 31 H 0.037 0.963 32 H 0.021 0.979 33 H 0.059 0.941 34 H 0.042 0.958 35 H 0.091 0.909 36 H 0.020 0.980 37 H 0.259 0.741 38 H 0.057 0.943 39 H 0.050 0.950 40 H 0.058 0.942 41 H 0.024 0.976 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.237 5.488 -12.079 16.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.075 4.075 3 C -0.170 4.170 4 C 0.061 3.939 5 O -0.313 6.313 6 C -0.160 4.160 7 C -0.046 4.046 8 C -0.039 4.039 9 N -0.254 5.254 10 C -0.073 4.073 11 C -0.141 4.141 12 C 0.029 3.971 13 C -0.548 4.548 14 H 0.072 0.928 15 C -0.140 4.140 16 N -0.532 5.532 17 Si 0.717 3.283 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.200 1.200 21 C -0.144 4.144 22 C -0.067 4.067 23 C -0.127 4.127 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.141 0.859 28 H 0.246 0.754 29 H 0.143 0.857 30 H 0.097 0.903 31 H 0.055 0.945 32 H 0.039 0.961 33 H 0.077 0.923 34 H 0.061 0.939 35 H 0.110 0.890 36 H 0.038 0.962 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.076 0.924 41 H 0.042 0.958 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -10.580 5.557 -12.365 17.196 hybrid contribution 1.022 -0.061 1.117 1.515 sum -9.558 5.497 -11.249 15.751 Atomic orbital electron populations 1.20774 0.91049 1.02904 1.02159 1.19737 0.96011 0.92587 0.99171 1.21199 0.93338 0.98171 1.04310 1.18372 0.89821 0.85065 1.00663 1.84785 1.76456 1.36349 1.33701 1.21340 1.00440 0.91561 1.02628 1.19650 0.93642 0.94263 0.97092 1.21055 0.97946 0.93450 0.91430 1.62036 1.48470 1.02853 1.12021 1.22360 0.92299 0.94895 0.97745 1.21644 1.00710 1.01169 0.90570 1.18690 0.93280 0.90684 0.94482 1.21211 1.26549 1.13528 0.93504 0.92766 1.24962 0.95440 0.95047 0.98541 1.69877 1.29382 1.19265 1.34665 0.86643 0.78328 0.77979 0.85326 1.20808 1.21310 1.19952 1.21676 1.01105 0.99047 0.92545 1.22136 0.96750 0.88567 0.99250 1.20904 0.93425 0.97542 1.00797 0.91286 0.91259 0.91643 0.85883 0.75392 0.85693 0.90338 0.94458 0.96105 0.92279 0.93918 0.89035 0.96189 0.93137 0.92470 0.93149 0.92376 0.95764 0.85771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.00 10.01 36.01 0.36 -0.64 16 2 C -0.07 -0.90 5.88 -104.65 -0.62 -1.51 16 3 C -0.15 -1.87 9.64 -39.43 -0.38 -2.25 16 4 C 0.10 1.41 6.70 -39.22 -0.26 1.15 16 5 O -0.50 -6.13 13.50 -19.42 -0.26 -6.40 16 6 C -0.14 -2.02 7.81 -39.44 -0.31 -2.32 16 7 C -0.05 -0.66 4.89 -104.64 -0.51 -1.17 16 8 C 0.09 1.30 5.12 -4.98 -0.03 1.28 16 9 N -0.53 -9.42 4.65 -236.11 -1.10 -10.52 16 10 C 0.05 1.07 5.16 -3.84 -0.02 1.05 16 11 C -0.10 -2.45 5.13 -26.65 -0.14 -2.58 16 12 C 0.05 1.18 2.16 -91.65 -0.20 0.98 16 13 C -0.51 -14.06 8.56 -34.44 -0.30 -14.36 16 14 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 15 C 0.06 1.69 5.31 -17.82 -0.09 1.59 16 16 N -0.89 -25.49 11.37 55.43 0.63 -24.86 16 17 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 21 C -0.11 -2.22 5.32 -26.65 -0.14 -2.37 16 22 C 0.06 1.08 5.46 -3.83 -0.02 1.06 16 23 C -0.11 -1.42 9.35 -39.56 -0.37 -1.79 16 24 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 26 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 27 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 28 H 0.39 3.12 9.06 45.56 0.41 3.53 16 29 H 0.13 1.79 7.95 -52.49 -0.42 1.37 16 30 H 0.08 1.01 7.93 -51.93 -0.41 0.60 16 31 H 0.04 0.54 8.07 -51.93 -0.42 0.12 16 32 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 1.11 5.75 -51.93 -0.30 0.81 16 34 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.09 2.42 6.17 -51.93 -0.32 2.10 16 36 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 38 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.06 0.90 8.02 -51.93 -0.42 0.48 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.12 1.47 8.06 -52.48 -0.42 1.04 16 LS Contribution 335.16 15.07 5.05 5.05 Total: -1.00 -30.10 335.16 -9.77 -39.87 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -6.06 Total: 2.38 kcal Atomic # 6 Polarization: -18.85 SS G_CDS: -3.02 Total: -21.87 kcal Atomic # 7 Polarization: -34.91 SS G_CDS: -0.47 Total: -35.38 kcal Atomic # 8 Polarization: -6.13 SS G_CDS: -0.26 Total: -6.40 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.10 -9.77 -39.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232884633.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.514 kcal (2) G-P(sol) polarization free energy of solvation -30.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds