Wall clock time and date at job start Mon Mar 30 2020 01:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38166 * 120.02733 * 2 1 4 4 C 1.38244 * 120.05805 * 179.97438 * 3 2 1 5 5 C 1.38289 * 120.10827 * 0.02562 * 4 3 2 6 6 C 1.50697 * 119.97259 * 180.02562 * 5 4 3 7 7 N 1.46903 * 109.47124 * 90.00126 * 6 5 4 8 8 C 1.46844 * 110.99765 * 294.20851 * 7 6 5 9 9 C 1.53042 * 109.52352 * 174.16213 * 8 7 6 10 10 C 1.53116 * 109.27614 * 59.17794 * 9 8 7 11 11 C 1.50705 * 109.57302 * 182.41054 * 10 9 8 12 12 H 1.07993 * 119.99918 * 119.71945 * 11 10 9 13 13 C 1.37885 * 119.99847 * 299.71770 * 11 10 9 14 14 N 1.31509 * 120.00232 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99742 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.46875 * 90.00063 * 15 13 11 17 17 H 1.48497 * 109.46870 * 210.00057 * 15 13 11 18 18 H 1.48505 * 109.46979 * 330.00053 * 15 13 11 19 19 C 1.53115 * 109.16533 * 302.34819 * 10 9 8 20 20 C 1.46853 * 110.99744 * 170.00318 * 7 6 5 21 21 C 1.38124 * 120.05507 * 0.02562 * 5 4 3 22 22 C 1.38706 * 120.02922 * 179.72173 * 2 1 3 23 23 O 1.35908 * 120.05445 * 359.97438 * 22 2 1 24 24 H 1.09002 * 109.47152 * 90.00138 * 1 2 3 25 25 H 1.09001 * 109.46980 * 330.00239 * 1 2 3 26 26 H 1.09004 * 109.47113 * 210.00219 * 1 2 3 27 27 H 1.08005 * 119.97330 * 359.97417 * 3 2 1 28 28 H 1.07998 * 119.94724 * 179.97438 * 4 3 2 29 29 H 1.09000 * 109.47136 * 210.00153 * 6 5 4 30 30 H 1.09005 * 109.47018 * 329.99965 * 6 5 4 31 31 H 1.09000 * 109.46683 * 294.17710 * 8 7 6 32 32 H 1.09004 * 109.46534 * 54.14850 * 8 7 6 33 33 H 1.09002 * 109.49901 * 299.23921 * 9 8 7 34 34 H 1.09004 * 109.53641 * 179.14611 * 9 8 7 35 35 H 1.09001 * 109.52174 * 62.25916 * 10 9 8 36 36 H 0.96997 * 120.00291 * 180.02562 * 14 13 11 37 37 H 1.09005 * 109.50215 * 297.71666 * 19 10 9 38 38 H 1.09000 * 109.53770 * 177.61293 * 19 10 9 39 39 H 1.08995 * 109.46095 * 305.85290 * 20 7 6 40 40 H 1.09001 * 109.46269 * 65.83517 * 20 7 6 41 41 H 1.08010 * 120.02299 * 179.97438 * 21 5 4 42 42 H 0.96698 * 113.99239 * 90.00172 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1962 0.0000 4 6 3.5809 1.1970 0.0005 5 6 4.2752 0.0010 0.0005 6 6 5.7822 0.0054 0.0017 7 7 6.2708 0.0062 1.3871 8 6 5.9120 1.2552 2.0709 9 6 6.3068 1.1620 3.5466 10 6 7.8143 0.9154 3.6519 11 6 8.2010 0.7635 5.1006 12 1 8.6543 -0.1541 5.4451 13 6 7.9762 1.7963 5.9860 14 7 7.4247 2.9140 5.5663 15 14 8.4549 1.6078 7.7818 16 1 9.8506 2.0774 7.9739 17 1 7.5396 2.4174 8.6256 18 1 8.3550 0.1788 8.1733 19 6 8.1685 -0.3651 2.8908 20 6 7.7198 -0.2276 1.4342 21 6 3.5887 -1.1975 -0.0005 22 6 2.2012 -1.2009 0.0058 23 8 1.5234 -2.3788 0.0121 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 0.8900 0.5138 26 1 -0.3633 -0.8900 0.5139 27 1 1.6584 2.1316 -0.0004 28 1 4.1195 2.1330 0.0001 29 1 6.1485 -0.8833 -0.5123 30 1 6.1433 0.8967 -0.5115 31 1 6.4391 2.0882 1.6059 32 1 4.8369 1.4165 1.9921 33 1 5.7695 0.3377 4.0156 34 1 6.0544 2.0947 4.0510 35 1 8.3525 1.7580 3.2177 36 1 7.2669 3.6407 6.1892 37 1 7.6605 -1.2135 3.3496 38 1 9.2464 -0.5238 2.9261 39 1 7.9577 -1.1433 0.8929 40 1 8.2384 0.6125 0.9723 41 1 4.1315 -2.1313 -0.0009 42 1 1.3269 -2.7241 -0.8695 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233233609.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:52 Heat of formation + Delta-G solvation = -30.905025 kcal Electronic energy + Delta-G solvation = -21294.731534 eV Core-core repulsion = 18238.917623 eV Total energy + Delta-G solvation = -3055.813911 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.01948 -38.25456 -36.64175 -34.27372 -32.74245 -31.02411 -30.05931 -29.60152 -28.00270 -25.65955 -23.77214 -22.79753 -21.91597 -21.41580 -20.62224 -18.55074 -17.87546 -16.35702 -16.02252 -15.76730 -15.33635 -15.06340 -14.41063 -14.29778 -13.84861 -13.58863 -13.37100 -12.91774 -12.75377 -12.46048 -12.45295 -12.22001 -12.01133 -11.77652 -11.36772 -11.30471 -11.19540 -10.92336 -10.67727 -10.53039 -10.29617 -10.17551 -9.92896 -9.38864 -8.93773 -8.75053 -8.62922 -8.39126 -8.25162 -7.71342 -5.93461 -3.98486 1.26722 1.38856 3.33975 3.40649 3.44604 3.60326 4.16172 4.48538 4.61821 4.80091 4.85825 5.05322 5.19011 5.36739 5.38148 5.45970 5.55530 5.62266 5.71815 5.75386 5.79397 5.93168 5.99343 6.12582 6.14550 6.24388 6.34228 6.40887 6.52025 6.65065 6.66891 6.69043 6.86432 6.89224 7.11668 7.20874 7.48121 7.63112 7.65333 7.71927 7.87194 8.09545 8.20254 8.52761 9.05125 9.65694 11.12811 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.023359 B = 0.004058 C = 0.003823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.388944 B = 6898.199033 C = 7322.904065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.118 4.118 3 C -0.107 4.107 4 C -0.115 4.115 5 C -0.056 4.056 6 C 0.090 3.910 7 N -0.530 5.530 8 C 0.054 3.946 9 C -0.103 4.103 10 C 0.048 3.952 11 C -0.510 4.510 12 H 0.054 0.946 13 C 0.061 3.939 14 N -0.892 5.892 15 Si 0.889 3.111 16 H -0.282 1.282 17 H -0.287 1.287 18 H -0.274 1.274 19 C -0.106 4.106 20 C 0.061 3.939 21 C -0.120 4.120 22 C 0.098 3.902 23 O -0.496 6.496 24 H 0.064 0.936 25 H 0.065 0.935 26 H 0.071 0.929 27 H 0.124 0.876 28 H 0.123 0.877 29 H 0.076 0.924 30 H 0.038 0.962 31 H 0.021 0.979 32 H 0.060 0.940 33 H 0.042 0.958 34 H 0.092 0.908 35 H 0.020 0.980 36 H 0.259 0.741 37 H 0.056 0.944 38 H 0.050 0.950 39 H 0.057 0.943 40 H 0.024 0.976 41 H 0.128 0.872 42 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.478 -5.024 -15.314 19.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.118 4.118 3 C -0.125 4.125 4 C -0.133 4.133 5 C -0.056 4.056 6 C -0.038 4.038 7 N -0.255 5.255 8 C -0.073 4.073 9 C -0.141 4.141 10 C 0.029 3.971 11 C -0.548 4.548 12 H 0.072 0.928 13 C -0.140 4.140 14 N -0.532 5.532 15 Si 0.717 3.283 16 H -0.208 1.208 17 H -0.213 1.213 18 H -0.199 1.199 19 C -0.144 4.144 20 C -0.067 4.067 21 C -0.139 4.139 22 C 0.053 3.947 23 O -0.305 6.305 24 H 0.083 0.917 25 H 0.084 0.916 26 H 0.090 0.910 27 H 0.142 0.858 28 H 0.141 0.859 29 H 0.095 0.905 30 H 0.056 0.944 31 H 0.039 0.961 32 H 0.079 0.921 33 H 0.061 0.939 34 H 0.110 0.890 35 H 0.038 0.962 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.042 0.958 41 H 0.145 0.855 42 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -10.711 -5.174 -14.372 18.656 hybrid contribution 0.617 0.601 0.126 0.871 sum -10.094 -4.573 -14.246 18.048 Atomic orbital electron populations 1.20659 0.91020 1.03113 1.01851 1.20158 0.96477 0.92684 1.02526 1.20882 0.94021 0.97074 1.00558 1.21115 0.94078 0.97894 1.00234 1.19661 0.95546 0.92471 0.97949 1.21038 0.90402 1.00909 0.91439 1.62034 1.14163 1.37010 1.12245 1.22368 0.99136 0.88051 0.97758 1.21647 0.98881 1.02977 0.90631 1.18685 0.92365 0.91552 0.94486 1.21218 1.39584 1.00377 0.93624 0.92773 1.24964 0.95192 0.95310 0.98527 1.69875 1.43815 1.04781 1.34706 0.86641 0.78218 0.78076 0.85337 1.20826 1.21305 1.19944 1.21678 0.98814 1.01328 0.92577 1.22132 0.86569 0.98710 0.99254 1.21236 0.92982 0.98537 1.01130 1.18249 0.89724 0.84669 1.02019 1.84837 1.76508 1.36113 1.33049 0.91695 0.91598 0.91039 0.85839 0.85931 0.90526 0.94431 0.96107 0.92134 0.93910 0.89016 0.96200 0.93147 0.92474 0.93162 0.92431 0.95779 0.85453 0.76170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.04 9.80 36.01 0.35 -0.69 16 2 C -0.12 -1.44 5.89 -104.47 -0.62 -2.05 16 3 C -0.11 -1.32 9.70 -39.61 -0.38 -1.70 16 4 C -0.11 -1.55 7.87 -39.56 -0.31 -1.86 16 5 C -0.06 -0.79 4.88 -104.65 -0.51 -1.30 16 6 C 0.09 1.32 5.12 -4.98 -0.03 1.29 16 7 N -0.53 -9.64 4.65 -236.10 -1.10 -10.73 16 8 C 0.05 1.09 5.16 -3.83 -0.02 1.07 16 9 C -0.10 -2.51 5.12 -26.65 -0.14 -2.65 16 10 C 0.05 1.21 2.16 -91.65 -0.20 1.01 16 11 C -0.51 -14.26 8.57 -34.44 -0.29 -14.56 16 12 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 13 C 0.06 1.71 5.31 -17.82 -0.09 1.61 16 14 N -0.89 -25.78 11.37 55.43 0.63 -25.15 16 15 Si 0.89 21.64 29.54 -169.99 -5.02 16.61 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 18 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 19 C -0.11 -2.27 5.32 -26.65 -0.14 -2.41 16 20 C 0.06 1.10 5.46 -3.83 -0.02 1.08 16 21 C -0.12 -1.64 9.64 -39.43 -0.38 -2.02 16 22 C 0.10 1.26 6.68 -39.22 -0.26 1.00 16 23 O -0.50 -5.57 12.55 -19.45 -0.24 -5.82 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 26 H 0.07 0.70 7.52 -51.93 -0.39 0.31 16 27 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 28 H 0.12 1.57 7.95 -52.49 -0.42 1.15 16 29 H 0.08 1.00 7.93 -51.93 -0.41 0.58 16 30 H 0.04 0.53 8.07 -51.93 -0.42 0.11 16 31 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 1.17 5.75 -51.93 -0.30 0.87 16 33 H 0.04 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.09 2.47 6.18 -51.93 -0.32 2.15 16 35 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 37 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.06 0.91 8.01 -51.93 -0.42 0.49 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.13 1.65 8.06 -52.48 -0.42 1.23 16 42 H 0.38 2.33 9.06 45.56 0.41 2.75 16 LS Contribution 333.82 15.07 5.03 5.03 Total: -1.00 -30.76 333.82 -9.77 -40.53 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -6.03 Total: 1.70 kcal Atomic # 6 Polarization: -19.13 SS G_CDS: -3.04 Total: -22.18 kcal Atomic # 7 Polarization: -35.41 SS G_CDS: -0.47 Total: -35.88 kcal Atomic # 8 Polarization: -5.57 SS G_CDS: -0.24 Total: -5.82 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.76 -9.77 -40.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233233609.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.629 kcal (2) G-P(sol) polarization free energy of solvation -30.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds