Wall clock time and date at job start Mon Mar 30 2020 01:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38166 * 120.02733 * 2 1 4 4 C 1.38244 * 120.05805 * 179.97438 * 3 2 1 5 5 C 1.38289 * 120.10827 * 0.02562 * 4 3 2 6 6 C 1.50697 * 119.97259 * 180.02562 * 5 4 3 7 7 N 1.46903 * 109.47124 * 90.00126 * 6 5 4 8 8 C 1.46844 * 110.99765 * 294.20851 * 7 6 5 9 9 C 1.53042 * 109.52352 * 174.16213 * 8 7 6 10 10 C 1.53116 * 109.27614 * 59.17794 * 9 8 7 11 11 C 1.50705 * 109.57302 * 182.41054 * 10 9 8 12 12 H 1.07993 * 119.99918 * 119.71945 * 11 10 9 13 13 C 1.37885 * 119.99847 * 299.71770 * 11 10 9 14 14 N 1.31509 * 120.00232 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99742 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.46875 * 90.00063 * 15 13 11 17 17 H 1.48497 * 109.46870 * 210.00057 * 15 13 11 18 18 H 1.48505 * 109.46979 * 330.00053 * 15 13 11 19 19 C 1.53115 * 109.16533 * 302.34819 * 10 9 8 20 20 C 1.46853 * 110.99744 * 170.00318 * 7 6 5 21 21 C 1.38124 * 120.05507 * 0.02562 * 5 4 3 22 22 C 1.38706 * 120.02922 * 179.72173 * 2 1 3 23 23 O 1.35908 * 120.05445 * 359.97438 * 22 2 1 24 24 H 1.09002 * 109.47152 * 90.00138 * 1 2 3 25 25 H 1.09001 * 109.46980 * 330.00239 * 1 2 3 26 26 H 1.09004 * 109.47113 * 210.00219 * 1 2 3 27 27 H 1.08005 * 119.97330 * 359.97417 * 3 2 1 28 28 H 1.07998 * 119.94724 * 179.97438 * 4 3 2 29 29 H 1.09000 * 109.47136 * 210.00153 * 6 5 4 30 30 H 1.09005 * 109.47018 * 329.99965 * 6 5 4 31 31 H 1.09000 * 109.46683 * 294.17710 * 8 7 6 32 32 H 1.09004 * 109.46534 * 54.14850 * 8 7 6 33 33 H 1.09002 * 109.49901 * 299.23921 * 9 8 7 34 34 H 1.09004 * 109.53641 * 179.14611 * 9 8 7 35 35 H 1.09001 * 109.52174 * 62.25916 * 10 9 8 36 36 H 0.96997 * 120.00291 * 180.02562 * 14 13 11 37 37 H 1.09005 * 109.50215 * 297.71666 * 19 10 9 38 38 H 1.09000 * 109.53770 * 177.61293 * 19 10 9 39 39 H 1.08995 * 109.46095 * 305.85290 * 20 7 6 40 40 H 1.09001 * 109.46269 * 65.83517 * 20 7 6 41 41 H 1.08010 * 120.02299 * 179.97438 * 21 5 4 42 42 H 0.96698 * 113.99239 * 90.00172 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1962 0.0000 4 6 3.5809 1.1970 0.0005 5 6 4.2752 0.0010 0.0005 6 6 5.7822 0.0054 0.0017 7 7 6.2708 0.0062 1.3871 8 6 5.9120 1.2552 2.0709 9 6 6.3068 1.1620 3.5466 10 6 7.8143 0.9154 3.6519 11 6 8.2010 0.7635 5.1006 12 1 8.6543 -0.1541 5.4451 13 6 7.9762 1.7963 5.9860 14 7 7.4247 2.9140 5.5663 15 14 8.4549 1.6078 7.7818 16 1 9.8506 2.0774 7.9739 17 1 7.5396 2.4174 8.6256 18 1 8.3550 0.1788 8.1733 19 6 8.1685 -0.3651 2.8908 20 6 7.7198 -0.2276 1.4342 21 6 3.5887 -1.1975 -0.0005 22 6 2.2012 -1.2009 0.0058 23 8 1.5234 -2.3788 0.0121 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 0.8900 0.5138 26 1 -0.3633 -0.8900 0.5139 27 1 1.6584 2.1316 -0.0004 28 1 4.1195 2.1330 0.0001 29 1 6.1485 -0.8833 -0.5123 30 1 6.1433 0.8967 -0.5115 31 1 6.4391 2.0882 1.6059 32 1 4.8369 1.4165 1.9921 33 1 5.7695 0.3377 4.0156 34 1 6.0544 2.0947 4.0510 35 1 8.3525 1.7580 3.2177 36 1 7.2669 3.6407 6.1892 37 1 7.6605 -1.2135 3.3496 38 1 9.2464 -0.5238 2.9261 39 1 7.9577 -1.1433 0.8929 40 1 8.2384 0.6125 0.9723 41 1 4.1315 -2.1313 -0.0009 42 1 1.3269 -2.7241 -0.8695 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233233609.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:51 Heat of formation + Delta-G solvation = -50.255958 kcal Electronic energy + Delta-G solvation = -21295.570654 eV Core-core repulsion = 18238.917623 eV Total energy + Delta-G solvation = -3056.653030 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.01811 -39.70428 -37.67872 -35.86441 -34.17653 -32.64931 -31.53107 -30.78791 -29.26958 -27.29668 -25.18523 -23.96970 -23.42618 -22.94389 -21.69242 -20.34225 -18.81780 -18.43485 -17.00600 -16.95632 -16.73398 -16.31857 -16.04436 -15.64205 -15.09529 -14.79429 -14.73717 -14.35636 -14.20457 -14.10452 -13.50208 -13.40762 -13.19503 -13.11240 -12.87890 -12.67371 -12.59929 -12.40105 -12.29242 -12.13239 -11.97829 -11.86253 -11.36486 -11.29100 -10.80965 -10.64420 -10.38169 -9.68210 -9.40721 -9.11761 -8.08078 -6.21333 0.29941 0.41607 1.40130 1.41239 1.51529 2.43635 2.60613 3.18482 3.22707 3.34650 3.83961 3.92582 4.08433 4.20939 4.24492 4.31077 4.36706 4.45782 4.50769 4.64630 4.70250 4.77598 4.81468 4.82336 4.91013 4.92508 4.98175 5.07798 5.11679 5.23634 5.28965 5.33146 5.43035 5.56624 5.59356 5.62274 5.67177 5.96015 6.00251 6.02808 6.28681 6.33592 6.41035 6.90231 6.91181 7.46322 8.96598 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.023359 B = 0.004058 C = 0.003823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.388944 B = 6898.199033 C = 7322.904065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.124 4.124 3 C -0.111 4.111 4 C -0.128 4.128 5 C -0.071 4.071 6 C 0.093 3.907 7 N -0.539 5.539 8 C 0.070 3.930 9 C -0.094 4.094 10 C 0.044 3.956 11 C -0.534 4.534 12 H 0.050 0.950 13 C 0.012 3.988 14 N -0.918 5.918 15 Si 0.952 3.048 16 H -0.275 1.275 17 H -0.283 1.283 18 H -0.270 1.270 19 C -0.100 4.100 20 C 0.066 3.934 21 C -0.132 4.132 22 C 0.093 3.907 23 O -0.504 6.504 24 H 0.085 0.915 25 H 0.073 0.927 26 H 0.067 0.933 27 H 0.144 0.856 28 H 0.124 0.876 29 H 0.098 0.902 30 H 0.045 0.955 31 H 0.016 0.984 32 H 0.069 0.931 33 H 0.023 0.977 34 H 0.060 0.940 35 H -0.010 1.010 36 H 0.260 0.740 37 H 0.048 0.952 38 H 0.056 0.944 39 H 0.091 0.909 40 H 0.025 0.975 41 H 0.131 0.869 42 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.278 -5.892 -16.297 20.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.125 4.125 3 C -0.129 4.129 4 C -0.147 4.147 5 C -0.072 4.072 6 C -0.034 4.034 7 N -0.264 5.264 8 C -0.058 4.058 9 C -0.132 4.132 10 C 0.026 3.974 11 C -0.573 4.573 12 H 0.068 0.932 13 C -0.186 4.186 14 N -0.557 5.557 15 Si 0.778 3.222 16 H -0.200 1.200 17 H -0.209 1.209 18 H -0.195 1.195 19 C -0.138 4.138 20 C -0.061 4.061 21 C -0.151 4.151 22 C 0.048 3.952 23 O -0.317 6.317 24 H 0.104 0.896 25 H 0.092 0.908 26 H 0.086 0.914 27 H 0.161 0.839 28 H 0.142 0.858 29 H 0.116 0.884 30 H 0.063 0.937 31 H 0.034 0.966 32 H 0.087 0.913 33 H 0.042 0.958 34 H 0.078 0.922 35 H 0.008 0.992 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.110 0.890 40 H 0.043 0.957 41 H 0.149 0.851 42 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -11.513 -6.060 -15.385 20.149 hybrid contribution 0.807 0.838 0.402 1.231 sum -10.707 -5.222 -14.983 19.141 Atomic orbital electron populations 1.20693 0.89110 1.03284 1.03239 1.20504 0.97988 0.92373 1.01588 1.21158 0.93755 0.98141 0.99883 1.21255 0.94842 0.97825 1.00767 1.19675 0.95288 0.92990 0.99221 1.21092 0.90852 1.02262 0.89154 1.61951 1.14204 1.35466 1.14759 1.22056 0.99513 0.89156 0.95061 1.21403 0.98089 1.00345 0.93374 1.18660 0.92529 0.92467 0.93787 1.21603 1.39914 1.00395 0.95342 0.93164 1.25740 0.95126 0.95025 1.02709 1.70012 1.44373 1.05346 1.36018 0.85642 0.78118 0.78156 0.80264 1.20019 1.20879 1.19454 1.21545 0.99202 0.98591 0.94437 1.22074 0.86601 1.00409 0.97023 1.21361 0.93606 0.98529 1.01633 1.18371 0.89679 0.85475 1.01635 1.84775 1.76183 1.35577 1.35163 0.89624 0.90839 0.91423 0.83859 0.85796 0.88414 0.93690 0.96560 0.91251 0.95814 0.92185 0.99189 0.93103 0.93347 0.92579 0.89049 0.95662 0.85128 0.73561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.76 9.80 71.24 0.70 -1.07 16 2 C -0.12 -2.78 5.89 -19.77 -0.12 -2.90 16 3 C -0.11 -2.55 9.70 22.25 0.22 -2.34 16 4 C -0.13 -3.31 7.87 22.28 0.18 -3.13 16 5 C -0.07 -1.93 4.88 -19.88 -0.10 -2.02 16 6 C 0.09 2.55 5.12 85.56 0.44 2.99 16 7 N -0.54 -18.98 4.65 -900.90 -4.19 -23.17 16 8 C 0.07 2.83 5.16 86.33 0.45 3.27 16 9 C -0.09 -4.70 5.12 30.65 0.16 -4.55 16 10 C 0.04 2.30 2.16 -11.46 -0.02 2.27 16 11 C -0.53 -30.58 8.57 25.60 0.22 -30.36 16 12 H 0.05 2.83 7.74 -2.91 -0.02 2.81 16 13 C 0.01 0.70 5.31 84.66 0.45 1.15 16 14 N -0.92 -54.33 11.37 21.45 0.24 -54.09 16 15 Si 0.95 44.82 29.54 68.60 2.03 46.85 16 16 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 17 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 18 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 19 C -0.10 -4.26 5.32 30.65 0.16 -4.10 16 20 C 0.07 2.30 5.46 86.33 0.47 2.77 16 21 C -0.13 -3.44 9.64 22.37 0.22 -3.22 16 22 C 0.09 2.24 6.68 22.50 0.15 2.39 16 23 O -0.50 -10.35 12.55 -92.51 -1.16 -11.51 16 24 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.07 1.10 8.09 -2.39 -0.02 1.08 16 26 H 0.07 1.18 7.52 -2.38 -0.02 1.16 16 27 H 0.14 2.60 8.06 -2.91 -0.02 2.58 16 28 H 0.12 3.07 7.95 -2.91 -0.02 3.04 16 29 H 0.10 2.26 7.93 -2.39 -0.02 2.24 16 30 H 0.04 1.18 8.07 -2.38 -0.02 1.16 16 31 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.07 2.67 5.75 -2.39 -0.01 2.66 16 33 H 0.02 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.06 3.37 6.18 -2.39 -0.01 3.36 16 35 H -0.01 -0.58 8.14 -2.39 -0.02 -0.59 16 36 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 37 H 0.05 2.12 8.14 -2.38 -0.02 2.11 16 38 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 39 H 0.09 2.60 8.01 -2.39 -0.02 2.58 16 40 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.13 3.19 8.06 -2.91 -0.02 3.17 16 42 H 0.41 4.01 9.06 -74.06 -0.67 3.34 16 Total: -1.00 -66.86 333.82 0.81 -66.05 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: 0.33 Total: 14.70 kcal Atomic # 6 Polarization: -42.39 SS G_CDS: 3.56 Total: -38.83 kcal Atomic # 7 Polarization: -73.31 SS G_CDS: -3.94 Total: -77.25 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: -1.16 Total: -11.51 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -66.86 0.81 -66.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233233609.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.792 kcal (2) G-P(sol) polarization free energy of solvation -66.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds