Wall clock time and date at job start Mon Mar 30 2020 01:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38164 * 120.02559 * 2 1 4 4 C 1.38244 * 120.05459 * 179.72236 * 3 2 1 5 5 C 1.38286 * 120.10883 * 0.51508 * 4 3 2 6 6 C 1.50706 * 119.97155 * 179.76792 * 5 4 3 7 7 N 1.46902 * 109.46577 * 269.71865 * 6 5 4 8 8 C 1.46842 * 111.00006 * 45.79109 * 7 6 5 9 9 C 1.53041 * 109.52461 * 185.83362 * 8 7 6 10 10 C 1.53116 * 109.28157 * 300.82529 * 9 8 7 11 11 C 1.53123 * 109.16464 * 57.64427 * 10 9 8 12 12 H 1.09007 * 109.52759 * 62.30922 * 11 10 9 13 13 C 1.50697 * 109.50911 * 182.40525 * 11 10 9 14 14 H 1.07994 * 119.99818 * 119.80370 * 13 11 10 15 15 C 1.37882 * 120.00008 * 299.81455 * 13 11 10 16 16 N 1.31511 * 119.99702 * 359.97438 * 15 13 11 17 17 Si 1.86796 * 119.99878 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47537 * 89.99426 * 17 15 13 19 19 H 1.48495 * 109.47193 * 209.99718 * 17 15 13 20 20 H 1.48501 * 109.46986 * 329.99368 * 17 15 13 21 21 C 1.46850 * 110.99680 * 170.00071 * 7 6 5 22 22 C 1.38128 * 120.05666 * 359.48685 * 5 4 3 23 23 C 1.38713 * 120.02815 * 179.97438 * 2 1 3 24 24 O 1.35901 * 120.05432 * 0.04192 * 23 2 1 25 25 H 1.08995 * 109.47211 * 270.01953 * 1 2 3 26 26 H 1.08995 * 109.46969 * 30.02141 * 1 2 3 27 27 H 1.09002 * 109.46940 * 150.02008 * 1 2 3 28 28 H 1.08003 * 119.97343 * 359.97438 * 3 2 1 29 29 H 1.07998 * 119.94783 * 180.25497 * 4 3 2 30 30 H 1.09000 * 109.47318 * 29.71373 * 6 5 4 31 31 H 1.09000 * 109.47161 * 149.72003 * 6 5 4 32 32 H 1.08997 * 109.46574 * 305.84795 * 8 7 6 33 33 H 1.09008 * 109.46278 * 65.82293 * 8 7 6 34 34 H 1.08999 * 109.50597 * 180.87764 * 9 8 7 35 35 H 1.09001 * 109.49969 * 60.75833 * 9 8 7 36 36 H 1.09006 * 109.52232 * 297.74745 * 10 9 8 37 37 H 1.09000 * 109.57942 * 177.59119 * 10 9 8 38 38 H 0.97008 * 119.99920 * 180.02562 * 16 15 13 39 39 H 1.08999 * 109.45996 * 294.17720 * 21 7 6 40 40 H 1.08998 * 109.46346 * 54.14090 * 21 7 6 41 41 H 1.08002 * 120.02471 * 180.23663 * 22 5 4 42 42 H 0.96698 * 114.00114 * 269.97899 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1962 0.0000 4 6 3.5809 1.1969 0.0058 5 6 4.2752 0.0010 0.0009 6 6 5.7823 0.0054 0.0019 7 7 6.2728 0.0064 -1.3828 8 6 5.5446 0.9866 -2.1984 9 6 5.9786 0.8587 -3.6604 10 6 7.4869 1.1013 -3.7631 11 6 8.2194 0.0988 -2.8670 12 1 8.0222 -0.9146 -3.2168 13 6 9.7012 0.3686 -2.9164 14 1 10.2344 0.6219 -2.0121 15 6 10.3762 0.2923 -4.1163 16 7 9.7269 -0.0165 -5.2175 17 14 12.2128 0.6274 -4.1777 18 1 12.9550 -0.6409 -3.9639 19 1 12.5689 1.1917 -5.5043 20 1 12.5746 1.5981 -3.1137 21 6 7.7204 0.2486 -1.4280 22 6 3.5887 -1.1976 0.0008 23 6 2.2012 -1.2009 0.0005 24 8 1.5234 -2.3789 0.0002 25 1 -0.3633 0.0004 1.0276 26 1 -0.3633 0.8898 -0.5141 27 1 -0.3633 -0.8902 -0.5135 28 1 1.6584 2.1316 -0.0004 29 1 4.1195 2.1330 0.0100 30 1 6.1427 0.8967 0.5156 31 1 6.1478 -0.8833 0.5163 32 1 4.4735 0.8003 -2.1199 33 1 5.7654 1.9923 -1.8407 34 1 5.4494 1.5969 -4.2630 35 1 5.7455 -0.1425 -4.0229 36 1 7.7157 2.1160 -3.4372 37 1 7.8085 0.9693 -4.7962 38 1 10.2018 -0.0706 -6.0616 39 1 7.9310 1.2578 -1.0739 40 1 8.2297 -0.4736 -0.7899 41 1 4.1315 -2.1313 0.0008 42 1 1.3270 -2.7199 0.8835 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233233827.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:21 Heat of formation + Delta-G solvation = -29.351825 kcal Electronic energy + Delta-G solvation = -21316.038357 eV Core-core repulsion = 18260.291798 eV Total energy + Delta-G solvation = -3055.746559 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.13140 -38.27830 -36.65275 -34.22175 -32.68350 -31.36379 -30.05209 -29.72782 -27.79733 -25.01726 -24.58749 -22.76425 -21.94555 -21.42887 -20.52176 -18.55717 -17.89969 -16.40228 -16.07650 -15.76023 -15.32919 -14.95901 -14.59365 -14.22785 -13.76204 -13.58136 -13.41238 -13.11711 -12.77468 -12.54027 -12.45764 -12.22404 -11.96439 -11.73433 -11.62293 -11.31953 -11.19712 -10.93473 -10.68490 -10.61540 -10.40055 -10.06396 -9.80251 -9.43384 -9.04539 -8.76408 -8.67380 -8.45021 -8.26429 -7.60848 -5.94963 -4.01258 1.19774 1.32650 3.32295 3.38954 3.41646 3.54675 4.13036 4.43763 4.69563 4.73506 4.80627 4.99071 5.12888 5.35025 5.37379 5.41417 5.54244 5.57180 5.69201 5.76737 5.85652 5.88241 6.00546 6.08453 6.13422 6.29812 6.34465 6.42234 6.46026 6.54483 6.63193 6.77586 6.78227 6.81230 6.99977 7.25697 7.42672 7.58929 7.69525 7.77367 7.83658 8.11409 8.20555 8.50556 9.02854 9.62835 11.11018 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.038946 B = 0.003618 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.765887 B = 7737.892688 C = 7811.192593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.119 4.119 3 C -0.108 4.108 4 C -0.118 4.118 5 C -0.059 4.059 6 C 0.090 3.910 7 N -0.531 5.531 8 C 0.060 3.940 9 C -0.117 4.117 10 C -0.110 4.110 11 C 0.055 3.945 12 H 0.034 0.966 13 C -0.515 4.515 14 H 0.053 0.947 15 C 0.063 3.937 16 N -0.888 5.888 17 Si 0.890 3.110 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.275 1.275 21 C 0.067 3.933 22 C -0.121 4.121 23 C 0.099 3.901 24 O -0.496 6.496 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.123 0.877 29 H 0.122 0.878 30 H 0.038 0.962 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.020 0.980 34 H 0.045 0.955 35 H 0.060 0.940 36 H 0.029 0.971 37 H 0.090 0.910 38 H 0.259 0.741 39 H 0.019 0.981 40 H 0.059 0.941 41 H 0.130 0.870 42 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.410 0.769 11.865 20.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.119 4.119 3 C -0.126 4.126 4 C -0.136 4.136 5 C -0.060 4.060 6 C -0.038 4.038 7 N -0.256 5.256 8 C -0.068 4.068 9 C -0.155 4.155 10 C -0.148 4.148 11 C 0.036 3.964 12 H 0.053 0.947 13 C -0.554 4.554 14 H 0.071 0.929 15 C -0.139 4.139 16 N -0.526 5.526 17 Si 0.718 3.282 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.200 1.200 21 C -0.059 4.059 22 C -0.140 4.140 23 C 0.055 3.945 24 O -0.305 6.305 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.090 0.910 28 H 0.141 0.859 29 H 0.140 0.860 30 H 0.056 0.944 31 H 0.098 0.902 32 H 0.082 0.918 33 H 0.039 0.961 34 H 0.064 0.936 35 H 0.078 0.922 36 H 0.048 0.952 37 H 0.108 0.892 38 H 0.069 0.931 39 H 0.038 0.962 40 H 0.078 0.922 41 H 0.148 0.852 42 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -16.414 0.340 10.857 19.683 hybrid contribution 1.181 0.961 0.722 1.685 sum -15.233 1.301 11.580 19.179 Atomic orbital electron populations 1.20656 0.90990 1.03066 1.01917 1.20163 0.96490 0.92664 1.02624 1.20863 0.93951 0.97054 1.00759 1.21114 0.94079 0.97836 1.00594 1.19747 0.95816 0.92506 0.97903 1.21116 0.89564 1.01187 0.91914 1.62177 1.05797 1.50249 1.07374 1.22146 0.97395 0.92386 0.94867 1.21677 0.99291 1.00823 0.93741 1.21649 0.90588 0.98112 1.04460 1.18662 0.93662 0.96163 0.87887 0.94740 1.21145 0.93037 1.47378 0.93804 0.92860 1.24939 0.98001 0.95168 0.95759 1.69899 1.35414 1.48600 0.98733 0.86627 0.85871 0.78416 0.77248 1.20716 1.21293 1.20039 1.22342 0.84226 0.97748 1.01605 1.21296 0.92990 0.98719 1.00950 1.18261 0.89726 0.84700 1.01811 1.84824 1.76463 1.36143 1.33098 0.91652 0.91647 0.91019 0.85876 0.86048 0.94424 0.90227 0.91780 0.96139 0.93647 0.92167 0.95237 0.89162 0.93071 0.96241 0.92222 0.85167 0.76012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 9.79 36.01 0.35 -0.61 16 2 C -0.12 -1.35 5.89 -104.47 -0.62 -1.97 16 3 C -0.11 -1.22 9.70 -39.61 -0.38 -1.61 16 4 C -0.12 -1.49 7.81 -39.56 -0.31 -1.79 16 5 C -0.06 -0.82 4.11 -104.64 -0.43 -1.25 16 6 C 0.09 1.37 5.43 -4.97 -0.03 1.35 16 7 N -0.53 -10.04 4.80 -236.11 -1.13 -11.17 16 8 C 0.06 1.10 4.58 -3.83 -0.02 1.08 16 9 C -0.12 -2.41 6.09 -26.65 -0.16 -2.57 16 10 C -0.11 -2.66 5.03 -26.61 -0.13 -2.79 16 11 C 0.06 1.40 2.26 -91.69 -0.21 1.19 16 12 H 0.03 0.97 8.14 -51.93 -0.42 0.55 16 13 C -0.51 -14.22 8.56 -34.44 -0.29 -14.52 16 14 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 15 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 16 N -0.89 -25.59 11.36 55.43 0.63 -24.96 16 17 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 C 0.07 1.45 4.65 -3.83 -0.02 1.43 16 22 C -0.12 -1.63 9.64 -39.43 -0.38 -2.01 16 23 C 0.10 1.23 6.68 -39.22 -0.26 0.97 16 24 O -0.50 -5.38 12.55 -19.43 -0.24 -5.63 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 27 H 0.07 0.65 7.53 -51.93 -0.39 0.26 16 28 H 0.12 1.12 8.06 -52.48 -0.42 0.69 16 29 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 30 H 0.04 0.56 8.02 -51.93 -0.42 0.14 16 31 H 0.08 1.15 8.08 -51.93 -0.42 0.73 16 32 H 0.06 1.11 5.65 -51.93 -0.29 0.82 16 33 H 0.02 0.37 8.14 -51.92 -0.42 -0.05 16 34 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.09 2.43 6.16 -51.93 -0.32 2.11 16 38 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 39 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.06 1.25 8.12 -51.93 -0.42 0.83 16 41 H 0.13 1.72 8.06 -52.49 -0.42 1.30 16 42 H 0.38 2.25 9.06 45.56 0.41 2.66 16 LS Contribution 333.04 15.07 5.02 5.02 Total: -1.00 -30.33 333.04 -9.77 -40.10 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -6.04 Total: 1.74 kcal Atomic # 6 Polarization: -18.47 SS G_CDS: -2.98 Total: -21.45 kcal Atomic # 7 Polarization: -35.63 SS G_CDS: -0.50 Total: -36.14 kcal Atomic # 8 Polarization: -5.38 SS G_CDS: -0.24 Total: -5.63 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.33 -9.77 -40.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233233827.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.745 kcal (2) G-P(sol) polarization free energy of solvation -30.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds