Wall clock time and date at job start Mon Mar 30 2020 01:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38164 * 120.02559 * 2 1 4 4 C 1.38244 * 120.05459 * 179.72236 * 3 2 1 5 5 C 1.38286 * 120.10883 * 0.51508 * 4 3 2 6 6 C 1.50706 * 119.97155 * 179.76792 * 5 4 3 7 7 N 1.46902 * 109.46577 * 269.71865 * 6 5 4 8 8 C 1.46842 * 111.00006 * 45.79109 * 7 6 5 9 9 C 1.53041 * 109.52461 * 185.83362 * 8 7 6 10 10 C 1.53116 * 109.28157 * 300.82529 * 9 8 7 11 11 C 1.53123 * 109.16464 * 57.64427 * 10 9 8 12 12 H 1.09007 * 109.52759 * 62.30922 * 11 10 9 13 13 C 1.50697 * 109.50911 * 182.40525 * 11 10 9 14 14 H 1.07994 * 119.99818 * 119.80370 * 13 11 10 15 15 C 1.37882 * 120.00008 * 299.81455 * 13 11 10 16 16 N 1.31511 * 119.99702 * 359.97438 * 15 13 11 17 17 Si 1.86796 * 119.99878 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47537 * 89.99426 * 17 15 13 19 19 H 1.48495 * 109.47193 * 209.99718 * 17 15 13 20 20 H 1.48501 * 109.46986 * 329.99368 * 17 15 13 21 21 C 1.46850 * 110.99680 * 170.00071 * 7 6 5 22 22 C 1.38128 * 120.05666 * 359.48685 * 5 4 3 23 23 C 1.38713 * 120.02815 * 179.97438 * 2 1 3 24 24 O 1.35901 * 120.05432 * 0.04192 * 23 2 1 25 25 H 1.08995 * 109.47211 * 270.01953 * 1 2 3 26 26 H 1.08995 * 109.46969 * 30.02141 * 1 2 3 27 27 H 1.09002 * 109.46940 * 150.02008 * 1 2 3 28 28 H 1.08003 * 119.97343 * 359.97438 * 3 2 1 29 29 H 1.07998 * 119.94783 * 180.25497 * 4 3 2 30 30 H 1.09000 * 109.47318 * 29.71373 * 6 5 4 31 31 H 1.09000 * 109.47161 * 149.72003 * 6 5 4 32 32 H 1.08997 * 109.46574 * 305.84795 * 8 7 6 33 33 H 1.09008 * 109.46278 * 65.82293 * 8 7 6 34 34 H 1.08999 * 109.50597 * 180.87764 * 9 8 7 35 35 H 1.09001 * 109.49969 * 60.75833 * 9 8 7 36 36 H 1.09006 * 109.52232 * 297.74745 * 10 9 8 37 37 H 1.09000 * 109.57942 * 177.59119 * 10 9 8 38 38 H 0.97008 * 119.99920 * 180.02562 * 16 15 13 39 39 H 1.08999 * 109.45996 * 294.17720 * 21 7 6 40 40 H 1.08998 * 109.46346 * 54.14090 * 21 7 6 41 41 H 1.08002 * 120.02471 * 180.23663 * 22 5 4 42 42 H 0.96698 * 114.00114 * 269.97899 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1962 0.0000 4 6 3.5809 1.1969 0.0058 5 6 4.2752 0.0010 0.0009 6 6 5.7823 0.0054 0.0019 7 7 6.2728 0.0064 -1.3828 8 6 5.5446 0.9866 -2.1984 9 6 5.9786 0.8587 -3.6604 10 6 7.4869 1.1013 -3.7631 11 6 8.2194 0.0988 -2.8670 12 1 8.0222 -0.9146 -3.2168 13 6 9.7012 0.3686 -2.9164 14 1 10.2344 0.6219 -2.0121 15 6 10.3762 0.2923 -4.1163 16 7 9.7269 -0.0165 -5.2175 17 14 12.2128 0.6274 -4.1777 18 1 12.9550 -0.6409 -3.9639 19 1 12.5689 1.1917 -5.5043 20 1 12.5746 1.5981 -3.1137 21 6 7.7204 0.2486 -1.4280 22 6 3.5887 -1.1976 0.0008 23 6 2.2012 -1.2009 0.0005 24 8 1.5234 -2.3789 0.0002 25 1 -0.3633 0.0004 1.0276 26 1 -0.3633 0.8898 -0.5141 27 1 -0.3633 -0.8902 -0.5135 28 1 1.6584 2.1316 -0.0004 29 1 4.1195 2.1330 0.0100 30 1 6.1427 0.8967 0.5156 31 1 6.1478 -0.8833 0.5163 32 1 4.4735 0.8003 -2.1199 33 1 5.7654 1.9923 -1.8407 34 1 5.4494 1.5969 -4.2630 35 1 5.7455 -0.1425 -4.0229 36 1 7.7157 2.1160 -3.4372 37 1 7.8085 0.9693 -4.7962 38 1 10.2018 -0.0706 -6.0616 39 1 7.9310 1.2578 -1.0739 40 1 8.2297 -0.4736 -0.7899 41 1 4.1315 -2.1313 0.0008 42 1 1.3270 -2.7199 0.8835 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233233827.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:21 Heat of formation + Delta-G solvation = -48.492447 kcal Electronic energy + Delta-G solvation = -21316.868357 eV Core-core repulsion = 18260.291798 eV Total energy + Delta-G solvation = -3056.576559 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.11732 -39.71371 -37.68610 -35.75776 -34.21673 -32.81592 -31.67279 -30.84326 -28.92170 -26.92586 -25.86863 -23.73137 -23.53306 -22.93744 -21.64645 -20.34304 -18.84877 -18.39188 -17.02551 -16.96856 -16.57479 -16.41241 -16.06015 -15.61227 -15.05953 -14.89118 -14.78432 -14.37743 -14.18743 -14.07484 -13.53211 -13.45360 -13.23997 -13.06697 -12.86675 -12.75596 -12.69585 -12.45859 -12.32000 -12.16508 -11.79925 -11.73327 -11.43066 -11.29771 -10.86729 -10.66668 -10.38254 -9.71629 -9.41425 -9.05403 -8.07693 -6.22220 0.27582 0.39951 1.41915 1.42029 1.52495 2.42668 2.60987 3.19257 3.23742 3.33412 3.78500 3.92280 4.06620 4.18947 4.20737 4.29690 4.38574 4.41114 4.56886 4.63530 4.68432 4.74488 4.81955 4.83783 4.87767 4.92425 4.96641 5.07020 5.11444 5.17237 5.29204 5.36775 5.41250 5.50795 5.59160 5.63245 5.66086 5.93280 5.96771 6.11835 6.20325 6.32097 6.45339 6.89629 6.90587 7.45727 8.97148 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.038946 B = 0.003618 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.765887 B = 7737.892688 C = 7811.192593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.121 4.121 3 C -0.106 4.106 4 C -0.124 4.124 5 C -0.074 4.074 6 C 0.093 3.907 7 N -0.545 5.545 8 C 0.070 3.930 9 C -0.112 4.112 10 C -0.102 4.102 11 C 0.052 3.948 12 H -0.006 1.006 13 C -0.536 4.536 14 H 0.053 0.947 15 C 0.012 3.988 16 N -0.916 5.916 17 Si 0.956 3.044 18 H -0.276 1.276 19 H -0.284 1.284 20 H -0.267 1.267 21 C 0.082 3.918 22 C -0.136 4.136 23 C 0.094 3.906 24 O -0.506 6.506 25 H 0.084 0.916 26 H 0.077 0.923 27 H 0.066 0.934 28 H 0.150 0.850 29 H 0.129 0.871 30 H 0.046 0.954 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.029 0.971 34 H 0.067 0.933 35 H 0.044 0.956 36 H 0.025 0.975 37 H 0.057 0.943 38 H 0.260 0.740 39 H 0.019 0.981 40 H 0.059 0.941 41 H 0.123 0.877 42 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.824 1.803 13.151 22.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.121 4.121 3 C -0.124 4.124 4 C -0.142 4.142 5 C -0.074 4.074 6 C -0.034 4.034 7 N -0.269 5.269 8 C -0.058 4.058 9 C -0.150 4.150 10 C -0.140 4.140 11 C 0.033 3.967 12 H 0.012 0.988 13 C -0.574 4.574 14 H 0.072 0.928 15 C -0.186 4.186 16 N -0.556 5.556 17 Si 0.782 3.218 18 H -0.202 1.202 19 H -0.209 1.209 20 H -0.192 1.192 21 C -0.046 4.046 22 C -0.156 4.156 23 C 0.050 3.950 24 O -0.318 6.318 25 H 0.102 0.898 26 H 0.096 0.904 27 H 0.085 0.915 28 H 0.167 0.833 29 H 0.147 0.853 30 H 0.064 0.936 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.047 0.953 34 H 0.086 0.914 35 H 0.063 0.937 36 H 0.043 0.957 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.038 0.962 40 H 0.078 0.922 41 H 0.141 0.859 42 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -17.845 1.364 12.175 21.646 hybrid contribution 1.529 0.573 0.345 1.669 sum -16.316 1.937 12.520 20.657 Atomic orbital electron populations 1.20699 0.88998 1.03420 1.03234 1.20514 0.98012 0.92251 1.01366 1.21171 0.93526 0.98159 0.99559 1.21249 0.94852 0.97529 1.00617 1.19620 0.94733 0.93313 0.99776 1.21109 0.90905 1.01770 0.89586 1.62061 1.04229 1.50650 1.09979 1.22052 0.98070 0.92667 0.93014 1.21601 0.96742 1.00567 0.96070 1.21449 0.93179 0.97338 1.02050 1.18588 0.93317 0.94103 0.90647 0.98761 1.21520 0.94483 1.47470 0.93975 0.92839 1.25752 1.02531 0.94941 0.95404 1.70051 1.37089 1.49259 0.99173 0.85587 0.80380 0.78452 0.77408 1.20181 1.20925 1.19165 1.22003 0.86169 0.97672 0.98708 1.21354 0.93816 0.98451 1.01940 1.18359 0.89437 0.85626 1.01590 1.84765 1.76119 1.35792 1.35133 0.89769 0.90441 0.91513 0.83279 0.85299 0.93564 0.89853 0.90114 0.95327 0.91413 0.93718 0.95654 0.92457 0.93088 0.96234 0.92239 0.85871 0.73543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.52 9.79 71.24 0.70 -0.83 16 2 C -0.12 -2.42 5.89 -19.77 -0.12 -2.54 16 3 C -0.11 -2.08 9.70 22.25 0.22 -1.86 16 4 C -0.12 -2.83 7.81 22.28 0.17 -2.66 16 5 C -0.07 -1.95 4.11 -19.88 -0.08 -2.03 16 6 C 0.09 2.76 5.43 85.56 0.46 3.22 16 7 N -0.54 -20.38 4.80 -900.91 -4.32 -24.70 16 8 C 0.07 2.48 4.58 86.33 0.40 2.87 16 9 C -0.11 -4.58 6.09 30.65 0.19 -4.39 16 10 C -0.10 -5.05 5.03 30.67 0.15 -4.90 16 11 C 0.05 2.74 2.26 -11.49 -0.03 2.71 16 12 H -0.01 -0.35 8.14 -2.38 -0.02 -0.37 16 13 C -0.54 -30.23 8.56 25.60 0.22 -30.01 16 14 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16 15 C 0.01 0.70 5.30 84.66 0.45 1.15 16 16 N -0.92 -54.31 11.36 21.45 0.24 -54.07 16 17 Si 0.96 44.25 29.54 68.60 2.03 46.28 16 18 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 19 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 20 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 21 C 0.08 3.54 4.65 86.32 0.40 3.94 16 22 C -0.14 -3.56 9.64 22.36 0.22 -3.35 16 23 C 0.09 2.18 6.68 22.50 0.15 2.33 16 24 O -0.51 -10.12 12.55 -92.44 -1.16 -11.28 16 25 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.08 0.93 8.09 -2.39 -0.02 0.91 16 27 H 0.07 1.04 7.53 -2.39 -0.02 1.02 16 28 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 29 H 0.13 2.71 8.06 -2.91 -0.02 2.69 16 30 H 0.05 1.29 8.02 -2.39 -0.02 1.27 16 31 H 0.08 2.37 8.08 -2.39 -0.02 2.35 16 32 H 0.08 2.65 5.65 -2.39 -0.01 2.63 16 33 H 0.03 0.98 8.14 -2.38 -0.02 0.96 16 34 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 35 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.02 1.23 8.14 -2.38 -0.02 1.21 16 37 H 0.06 3.21 6.16 -2.39 -0.01 3.19 16 38 H 0.26 14.64 8.31 -92.70 -0.77 13.87 16 39 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.06 2.53 8.12 -2.39 -0.02 2.51 16 41 H 0.12 3.26 8.06 -2.91 -0.02 3.24 16 42 H 0.41 3.98 9.06 -74.06 -0.67 3.31 16 Total: -1.00 -66.07 333.04 0.61 -65.46 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: 0.33 Total: 14.66 kcal Atomic # 6 Polarization: -39.85 SS G_CDS: 3.50 Total: -36.35 kcal Atomic # 7 Polarization: -74.69 SS G_CDS: -4.08 Total: -78.77 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: -1.16 Total: -11.28 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -66.07 0.61 -65.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233233827.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.967 kcal (2) G-P(sol) polarization free energy of solvation -66.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds