Wall clock time and date at job start Mon Mar 30 2020 02:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50705 * 109.47384 * 2 1 4 4 C 1.38163 * 120.03153 * 264.97904 * 3 2 1 5 5 C 1.38241 * 120.05568 * 180.02562 * 4 3 2 6 6 C 1.38284 * 120.11455 * 359.97438 * 5 4 3 7 7 C 1.38128 * 120.05400 * 359.75922 * 6 5 4 8 8 C 1.50695 * 120.02822 * 180.27754 * 7 6 5 9 9 C 1.38712 * 120.02488 * 85.00507 * 3 2 1 10 10 O 1.35904 * 120.05539 * 359.97438 * 9 3 2 11 11 C 1.42904 * 116.99682 * 90.00500 * 10 9 3 12 12 C 1.53514 * 114.16878 * 209.99822 * 11 10 9 13 13 N 1.47482 * 87.93039 * 220.33055 * 12 11 10 14 14 C 1.46901 * 110.99764 * 138.70591 * 13 12 11 15 15 C 1.50701 * 109.46921 * 169.99672 * 14 13 12 16 16 H 1.07998 * 120.00129 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99861 * 179.97438 * 15 14 13 18 18 N 1.31510 * 119.99913 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99734 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47432 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46890 * 120.00210 * 19 17 15 22 22 H 1.48501 * 109.47062 * 240.00257 * 19 17 15 23 23 C 1.47480 * 87.83699 * 27.01095 * 13 12 11 24 24 H 1.08997 * 109.46963 * 59.99702 * 1 2 3 25 25 H 1.08996 * 109.47070 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46671 * 299.99666 * 1 2 3 27 27 H 1.09004 * 109.47051 * 240.00177 * 2 1 3 28 28 H 1.09001 * 109.47393 * 120.00546 * 2 1 3 29 29 H 1.08005 * 119.96973 * 0.02562 * 4 3 2 30 30 H 1.08005 * 119.94184 * 180.02562 * 5 4 3 31 31 H 1.07997 * 119.97231 * 180.02562 * 6 5 4 32 32 H 1.08998 * 109.47632 * 270.23337 * 8 7 6 33 33 H 1.08996 * 109.47385 * 30.23745 * 8 7 6 34 34 H 1.09003 * 109.47256 * 150.23129 * 8 7 6 35 35 H 1.08997 * 113.25708 * 342.95164 * 11 10 9 36 36 H 1.08994 * 113.47382 * 105.55899 * 12 11 10 37 37 H 1.09001 * 113.53015 * 335.10309 * 12 11 10 38 38 H 1.09002 * 109.47401 * 49.99700 * 14 13 12 39 39 H 1.09001 * 109.46874 * 289.99713 * 14 13 12 40 40 H 0.97002 * 119.99768 * 179.97438 * 18 17 15 41 41 H 1.08999 * 113.47664 * 87.75895 * 23 13 12 42 42 H 1.08994 * 113.47488 * 218.22090 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3616 2.0378 -1.1916 5 6 2.8230 3.3410 -1.1921 6 6 2.9558 4.0305 -0.0008 7 6 2.6228 3.4200 1.1927 8 6 2.7618 4.1740 2.4900 9 6 2.1652 2.1101 1.1964 10 8 1.8420 1.5053 2.3698 11 6 2.8835 0.7934 3.0411 12 6 2.3938 -0.3999 3.8735 13 7 3.3698 -0.0102 4.9082 14 6 2.7902 -0.1351 6.2522 15 6 3.8754 0.0306 7.2846 16 1 4.8938 0.2111 6.9735 17 6 3.5681 -0.0471 8.6265 18 7 2.3280 -0.2664 9.0054 19 14 4.9132 0.1590 9.9061 20 1 6.2120 0.3946 9.2257 21 1 4.5939 1.3184 10.7775 22 1 5.0029 -1.0715 10.7326 23 6 3.2595 1.3741 4.4116 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 2.2584 1.5016 -2.1234 30 1 3.0795 3.8217 -2.1247 31 1 3.3161 5.0486 -0.0039 32 1 3.7615 4.0182 2.8955 33 1 2.6041 5.2375 2.3108 34 1 2.0203 3.8117 3.2021 35 1 3.7353 0.5700 2.3988 36 1 2.6082 -1.3656 3.4159 37 1 1.3572 -0.3080 4.1978 38 1 2.3326 -1.1185 6.3607 39 1 2.0327 0.6358 6.3943 40 1 2.1119 -0.3215 9.9494 41 1 2.4540 1.9403 4.8791 42 1 4.2076 1.9117 4.4101 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233929870.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:57 Heat of formation + Delta-G solvation = 11.268172 kcal Electronic energy + Delta-G solvation = -21313.309905 eV Core-core repulsion = 18259.324761 eV Total energy + Delta-G solvation = -3053.985144 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.46158 -39.05197 -36.47699 -34.55398 -32.87621 -31.76100 -29.58556 -28.73838 -26.86122 -25.39946 -25.17860 -23.88215 -22.14190 -21.28502 -20.54403 -19.49758 -17.80255 -16.43060 -16.24331 -15.64008 -15.58947 -14.70978 -14.44393 -14.01441 -13.95468 -13.77543 -13.68956 -13.32420 -12.83097 -12.58748 -12.40165 -12.28210 -12.10366 -11.99421 -11.80876 -11.54871 -11.46750 -11.20670 -11.00035 -10.86517 -10.74442 -10.52059 -10.22578 -9.80457 -9.31848 -9.22107 -8.66302 -8.50725 -8.44422 -7.94360 -6.04527 -4.05869 1.17631 1.27375 3.30563 3.37666 3.40344 3.43801 3.99086 4.42562 4.65575 4.71621 4.82472 4.88212 4.93208 5.11629 5.25754 5.28173 5.31121 5.32124 5.36217 5.44176 5.56315 5.65178 5.73829 5.81772 5.90058 5.97946 5.99844 6.03343 6.13427 6.21129 6.25656 6.28525 6.35351 6.39100 6.44199 6.55747 6.58936 6.79728 7.17098 7.62595 7.77230 7.83489 8.07631 8.42615 9.01702 9.58285 11.06626 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.027479 B = 0.003915 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.732157 B = 7150.024511 C = 7804.079037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.081 4.081 3 C -0.097 4.097 4 C -0.116 4.116 5 C -0.125 4.125 6 C -0.117 4.117 7 C -0.097 4.097 8 C -0.115 4.115 9 C 0.102 3.898 10 O -0.319 6.319 11 C 0.060 3.940 12 C -0.002 4.002 13 N -0.462 5.462 14 C 0.161 3.839 15 C -0.505 4.505 16 H 0.064 0.936 17 C 0.054 3.946 18 N -0.899 5.899 19 Si 0.899 3.101 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.002 4.002 24 H 0.050 0.950 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.122 0.878 30 H 0.121 0.879 31 H 0.123 0.877 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.094 0.906 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.030 0.970 39 H 0.006 0.994 40 H 0.261 0.739 41 H 0.073 0.927 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.416 5.943 -20.516 21.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.118 4.118 3 C -0.097 4.097 4 C -0.134 4.134 5 C -0.143 4.143 6 C -0.135 4.135 7 C -0.097 4.097 8 C -0.171 4.171 9 C 0.058 3.942 10 O -0.235 6.235 11 C 0.004 3.996 12 C -0.131 4.131 13 N -0.187 5.187 14 C 0.035 3.965 15 C -0.543 4.543 16 H 0.082 0.918 17 C -0.147 4.147 18 N -0.539 5.539 19 Si 0.727 3.273 20 H -0.196 1.196 21 H -0.211 1.211 22 H -0.210 1.210 23 C -0.131 4.131 24 H 0.069 0.931 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.094 0.906 29 H 0.140 0.860 30 H 0.139 0.861 31 H 0.141 0.859 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.112 0.888 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.048 0.952 39 H 0.024 0.976 40 H 0.071 0.929 41 H 0.091 0.909 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.057 5.566 -20.159 20.940 hybrid contribution -0.016 0.498 0.796 0.939 sum -1.073 6.064 -19.363 20.319 Atomic orbital electron populations 1.21686 0.94481 1.01632 1.02164 1.20435 0.96517 0.92132 1.02729 1.20240 0.99902 0.96882 0.92688 1.20882 1.00349 0.95162 0.97016 1.21080 1.00475 0.94799 0.97916 1.20918 1.00943 0.99989 0.91650 1.20282 0.98588 0.94539 0.96305 1.20747 1.03127 0.98964 0.94297 1.18418 0.99097 0.91024 0.85653 1.86099 1.36225 1.68243 1.32977 1.24303 0.89788 0.93499 0.91995 1.24093 0.97676 0.97259 0.94065 1.68997 1.36959 1.08440 1.04262 1.20276 0.94893 0.97120 0.84180 1.21128 0.94900 1.48295 0.90019 0.91787 1.25006 0.95635 0.95408 0.98659 1.69967 1.17772 1.50000 1.16155 0.86419 0.82011 0.77640 0.81239 1.19625 1.21060 1.20970 1.24272 1.01253 0.94544 0.93036 0.93078 0.92491 0.91954 0.91424 0.90573 0.86032 0.86116 0.85935 0.90974 0.91735 0.90523 0.88848 0.90215 0.91074 0.95178 0.97647 0.92935 0.90902 0.90509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.89 37.16 0.37 -1.14 16 2 C -0.08 -0.90 5.79 -27.88 -0.16 -1.06 16 3 C -0.10 -1.19 5.15 -104.47 -0.54 -1.73 16 4 C -0.12 -1.23 9.68 -39.61 -0.38 -1.61 16 5 C -0.12 -1.25 10.04 -39.56 -0.40 -1.65 16 6 C -0.12 -1.27 9.70 -39.60 -0.38 -1.66 16 7 C -0.10 -1.24 5.89 -104.47 -0.62 -1.86 16 8 C -0.11 -1.39 9.79 36.00 0.35 -1.04 16 9 C 0.10 1.43 5.56 -39.22 -0.22 1.21 16 10 O -0.32 -5.01 8.43 -19.44 -0.16 -5.17 16 11 C 0.06 0.97 4.02 -26.20 -0.11 0.87 16 12 C 0.00 -0.03 7.52 -7.54 -0.06 -0.09 16 13 N -0.46 -10.15 6.32 -246.10 -1.55 -11.71 16 14 C 0.16 4.26 4.57 -4.97 -0.02 4.23 16 15 C -0.50 -14.49 9.39 -34.44 -0.32 -14.82 16 16 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 17 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 18 N -0.90 -26.93 13.29 55.43 0.74 -26.20 16 19 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 20 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 C 0.00 -0.03 7.55 -7.54 -0.06 -0.09 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.07 0.63 8.05 -51.93 -0.42 0.21 16 28 H 0.08 0.93 7.07 -51.93 -0.37 0.57 16 29 H 0.12 1.02 8.06 -52.48 -0.42 0.59 16 30 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 31 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 34 H 0.08 1.04 7.53 -51.93 -0.39 0.65 16 35 H 0.09 1.45 7.96 -51.93 -0.41 1.03 16 36 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.07 1.33 7.91 -51.93 -0.41 0.92 16 38 H 0.03 0.85 8.08 -51.93 -0.42 0.43 16 39 H 0.01 0.16 7.30 -51.93 -0.38 -0.22 16 40 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 41 H 0.07 1.45 7.42 -51.93 -0.39 1.07 16 42 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 347.44 15.07 5.24 5.24 Total: -1.00 -30.65 347.44 -10.36 -41.01 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -6.95 Total: -1.03 kcal Atomic # 6 Polarization: -16.33 SS G_CDS: -2.64 Total: -18.97 kcal Atomic # 7 Polarization: -37.09 SS G_CDS: -0.82 Total: -37.90 kcal Atomic # 8 Polarization: -5.01 SS G_CDS: -0.16 Total: -5.17 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.65 -10.36 -41.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233929870.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.281 kcal (2) G-P(sol) polarization free energy of solvation -30.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds