Wall clock time and date at job start Mon Mar 30 2020 02:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50705 * 109.47384 * 2 1 4 4 C 1.38163 * 120.03153 * 264.97904 * 3 2 1 5 5 C 1.38241 * 120.05568 * 180.02562 * 4 3 2 6 6 C 1.38284 * 120.11455 * 359.97438 * 5 4 3 7 7 C 1.38128 * 120.05400 * 359.75922 * 6 5 4 8 8 C 1.50695 * 120.02822 * 180.27754 * 7 6 5 9 9 C 1.38712 * 120.02488 * 85.00507 * 3 2 1 10 10 O 1.35904 * 120.05539 * 359.97438 * 9 3 2 11 11 C 1.42904 * 116.99682 * 90.00500 * 10 9 3 12 12 C 1.53514 * 114.16878 * 209.99822 * 11 10 9 13 13 N 1.47482 * 87.93039 * 220.33055 * 12 11 10 14 14 C 1.46901 * 110.99764 * 138.70591 * 13 12 11 15 15 C 1.50701 * 109.46921 * 169.99672 * 14 13 12 16 16 H 1.07998 * 120.00129 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99861 * 179.97438 * 15 14 13 18 18 N 1.31510 * 119.99913 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99734 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47432 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46890 * 120.00210 * 19 17 15 22 22 H 1.48501 * 109.47062 * 240.00257 * 19 17 15 23 23 C 1.47480 * 87.83699 * 27.01095 * 13 12 11 24 24 H 1.08997 * 109.46963 * 59.99702 * 1 2 3 25 25 H 1.08996 * 109.47070 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46671 * 299.99666 * 1 2 3 27 27 H 1.09004 * 109.47051 * 240.00177 * 2 1 3 28 28 H 1.09001 * 109.47393 * 120.00546 * 2 1 3 29 29 H 1.08005 * 119.96973 * 0.02562 * 4 3 2 30 30 H 1.08005 * 119.94184 * 180.02562 * 5 4 3 31 31 H 1.07997 * 119.97231 * 180.02562 * 6 5 4 32 32 H 1.08998 * 109.47632 * 270.23337 * 8 7 6 33 33 H 1.08996 * 109.47385 * 30.23745 * 8 7 6 34 34 H 1.09003 * 109.47256 * 150.23129 * 8 7 6 35 35 H 1.08997 * 113.25708 * 342.95164 * 11 10 9 36 36 H 1.08994 * 113.47382 * 105.55899 * 12 11 10 37 37 H 1.09001 * 113.53015 * 335.10309 * 12 11 10 38 38 H 1.09002 * 109.47401 * 49.99700 * 14 13 12 39 39 H 1.09001 * 109.46874 * 289.99713 * 14 13 12 40 40 H 0.97002 * 119.99768 * 179.97438 * 18 17 15 41 41 H 1.08999 * 113.47664 * 87.75895 * 23 13 12 42 42 H 1.08994 * 113.47488 * 218.22090 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3616 2.0378 -1.1916 5 6 2.8230 3.3410 -1.1921 6 6 2.9558 4.0305 -0.0008 7 6 2.6228 3.4200 1.1927 8 6 2.7618 4.1740 2.4900 9 6 2.1652 2.1101 1.1964 10 8 1.8420 1.5053 2.3698 11 6 2.8835 0.7934 3.0411 12 6 2.3938 -0.3999 3.8735 13 7 3.3698 -0.0102 4.9082 14 6 2.7902 -0.1351 6.2522 15 6 3.8754 0.0306 7.2846 16 1 4.8938 0.2111 6.9735 17 6 3.5681 -0.0471 8.6265 18 7 2.3280 -0.2664 9.0054 19 14 4.9132 0.1590 9.9061 20 1 6.2120 0.3946 9.2257 21 1 4.5939 1.3184 10.7775 22 1 5.0029 -1.0715 10.7326 23 6 3.2595 1.3741 4.4116 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 2.2584 1.5016 -2.1234 30 1 3.0795 3.8217 -2.1247 31 1 3.3161 5.0486 -0.0039 32 1 3.7615 4.0182 2.8955 33 1 2.6041 5.2375 2.3108 34 1 2.0203 3.8117 3.2021 35 1 3.7353 0.5700 2.3988 36 1 2.6082 -1.3656 3.4159 37 1 1.3572 -0.3080 4.1978 38 1 2.3326 -1.1185 6.3607 39 1 2.0327 0.6358 6.3943 40 1 2.1119 -0.3215 9.9494 41 1 2.4540 1.9403 4.8791 42 1 4.2076 1.9117 4.4101 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233929870.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:57 Heat of formation + Delta-G solvation = -7.131136 kcal Electronic energy + Delta-G solvation = -21314.107759 eV Core-core repulsion = 18259.324761 eV Total energy + Delta-G solvation = -3054.782998 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.64942 -40.36177 -37.67549 -35.42483 -35.03536 -32.67640 -31.28137 -29.85973 -27.90449 -27.04652 -26.86069 -24.83833 -23.70528 -22.52200 -21.42655 -21.03708 -19.00714 -18.48247 -17.29740 -17.16284 -16.59308 -16.31100 -15.93106 -15.57845 -15.00909 -14.87112 -14.65940 -14.35669 -14.17671 -13.99115 -13.77314 -13.65348 -13.50575 -13.23413 -13.10299 -12.84406 -12.73664 -12.41403 -12.39201 -12.28242 -12.13105 -11.84395 -11.71582 -11.60534 -11.24309 -10.65841 -10.58954 -9.83635 -9.51972 -9.39766 -8.25351 -6.36287 0.25347 0.41249 1.39144 1.39713 1.54066 2.35277 2.42562 2.95198 3.06947 3.31684 3.40077 3.79255 3.88734 3.92855 4.08170 4.14761 4.32199 4.42590 4.45448 4.50780 4.57494 4.59263 4.60285 4.64846 4.73024 4.76884 4.81648 4.82527 4.88710 5.00755 5.07250 5.08663 5.14537 5.30730 5.39002 5.52470 5.56039 5.57538 5.68796 5.71161 5.92526 6.01939 6.35528 6.65135 6.77714 7.33473 8.86369 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.027479 B = 0.003915 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.732157 B = 7150.024511 C = 7804.079037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.081 4.081 3 C -0.105 4.105 4 C -0.117 4.117 5 C -0.117 4.117 6 C -0.120 4.120 7 C -0.112 4.112 8 C -0.112 4.112 9 C 0.066 3.934 10 O -0.328 6.328 11 C 0.091 3.909 12 C -0.002 4.002 13 N -0.477 5.477 14 C 0.177 3.823 15 C -0.527 4.527 16 H 0.060 0.940 17 C 0.001 3.999 18 N -0.934 5.934 19 Si 0.973 3.027 20 H -0.264 1.264 21 H -0.276 1.276 22 H -0.275 1.275 23 C -0.003 4.003 24 H 0.062 0.938 25 H 0.067 0.933 26 H 0.037 0.963 27 H 0.090 0.910 28 H 0.060 0.940 29 H 0.148 0.852 30 H 0.153 0.847 31 H 0.145 0.855 32 H 0.069 0.931 33 H 0.084 0.916 34 H 0.052 0.948 35 H 0.108 0.892 36 H 0.099 0.901 37 H 0.059 0.941 38 H 0.004 0.996 39 H -0.021 1.021 40 H 0.266 0.734 41 H 0.056 0.944 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.092 6.688 -22.743 23.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.119 4.119 3 C -0.105 4.105 4 C -0.135 4.135 5 C -0.135 4.135 6 C -0.138 4.138 7 C -0.113 4.113 8 C -0.169 4.169 9 C 0.023 3.977 10 O -0.244 6.244 11 C 0.035 3.965 12 C -0.131 4.131 13 N -0.201 5.201 14 C 0.050 3.950 15 C -0.565 4.565 16 H 0.079 0.921 17 C -0.197 4.197 18 N -0.574 5.574 19 Si 0.797 3.203 20 H -0.188 1.188 21 H -0.202 1.202 22 H -0.201 1.201 23 C -0.132 4.132 24 H 0.081 0.919 25 H 0.086 0.914 26 H 0.056 0.944 27 H 0.108 0.892 28 H 0.078 0.922 29 H 0.166 0.834 30 H 0.171 0.829 31 H 0.163 0.837 32 H 0.088 0.912 33 H 0.103 0.897 34 H 0.071 0.929 35 H 0.126 0.874 36 H 0.117 0.883 37 H 0.078 0.922 38 H 0.022 0.978 39 H -0.003 1.003 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.262 6.316 -22.411 23.286 hybrid contribution -0.479 0.320 1.346 1.464 sum -0.217 6.636 -21.065 22.086 Atomic orbital electron populations 1.21650 0.94323 1.02143 1.01475 1.20471 0.96634 0.91746 1.03022 1.20436 0.99898 0.97402 0.92775 1.21236 0.99370 0.95623 0.97259 1.21507 0.98614 0.94492 0.98846 1.21229 1.00331 1.01085 0.91165 1.20452 0.99211 0.94360 0.97265 1.20712 1.02167 1.00152 0.93861 1.18733 1.01758 0.91880 0.85374 1.86094 1.35843 1.68290 1.34150 1.23869 0.90073 0.91583 0.91006 1.24111 0.96344 0.99317 0.93357 1.68885 1.37738 1.10719 1.02761 1.19925 0.93795 0.94576 0.86682 1.21431 0.95122 1.48843 0.91148 0.92146 1.25960 0.98173 0.94621 1.00916 1.70088 1.19922 1.50484 1.16946 0.85276 0.78892 0.77957 0.78143 1.18793 1.20156 1.20100 1.24254 1.01107 0.93080 0.94790 0.91928 0.91414 0.94398 0.89169 0.92180 0.83381 0.82892 0.83685 0.91232 0.89706 0.92890 0.87421 0.88252 0.92243 0.97820 1.00328 0.92519 0.92590 0.89828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 9.89 71.98 0.71 -2.08 16 2 C -0.08 -1.69 5.79 29.85 0.17 -1.52 16 3 C -0.10 -2.41 5.15 -19.77 -0.10 -2.51 16 4 C -0.12 -2.09 9.68 22.25 0.22 -1.88 16 5 C -0.12 -1.90 10.04 22.28 0.22 -1.68 16 6 C -0.12 -2.29 9.70 22.25 0.22 -2.08 16 7 C -0.11 -2.78 5.89 -19.77 -0.12 -2.90 16 8 C -0.11 -2.72 9.79 71.23 0.70 -2.02 16 9 C 0.07 1.81 5.56 22.51 0.13 1.94 16 10 O -0.33 -10.51 8.43 -92.47 -0.78 -11.29 16 11 C 0.09 2.99 4.02 30.94 0.12 3.12 16 12 C 0.00 -0.08 7.52 83.58 0.63 0.54 16 13 N -0.48 -21.70 6.32 -932.90 -5.89 -27.59 16 14 C 0.18 9.84 4.57 85.56 0.39 10.23 16 15 C -0.53 -31.10 9.39 25.60 0.24 -30.86 16 16 H 0.06 3.53 7.81 -2.91 -0.02 3.50 16 17 C 0.00 0.08 5.46 84.66 0.46 0.54 16 18 N -0.93 -57.27 13.29 21.45 0.28 -56.99 16 19 Si 0.97 45.10 29.54 68.60 2.03 47.13 16 20 H -0.26 -11.79 7.11 99.48 0.71 -11.09 16 21 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 22 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 23 C 0.00 -0.12 7.55 83.58 0.63 0.51 16 24 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.09 1.44 8.05 -2.39 -0.02 1.42 16 28 H 0.06 1.43 7.07 -2.39 -0.02 1.41 16 29 H 0.15 1.83 8.06 -2.91 -0.02 1.80 16 30 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 31 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 32 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.08 1.63 8.09 -2.39 -0.02 1.61 16 34 H 0.05 1.51 7.53 -2.39 -0.02 1.49 16 35 H 0.11 3.26 7.96 -2.39 -0.02 3.24 16 36 H 0.10 3.29 8.14 -2.39 -0.02 3.27 16 37 H 0.06 2.36 7.91 -2.39 -0.02 2.34 16 38 H 0.00 0.22 8.08 -2.39 -0.02 0.20 16 39 H -0.02 -1.25 7.30 -2.39 -0.02 -1.27 16 40 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 41 H 0.06 2.39 7.42 -2.39 -0.02 2.37 16 42 H 0.08 3.12 8.14 -2.39 -0.02 3.10 16 Total: -1.00 -67.76 347.44 1.24 -66.52 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: 0.97 Total: 12.86 kcal Atomic # 6 Polarization: -35.27 SS G_CDS: 4.62 Total: -30.65 kcal Atomic # 7 Polarization: -78.97 SS G_CDS: -5.61 Total: -84.58 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: -0.78 Total: -11.29 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -67.76 1.24 -66.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233929870.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.389 kcal (2) G-P(sol) polarization free energy of solvation -67.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds