Wall clock time and date at job start Mon Mar 30 2020 02:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50704 * 109.46816 * 2 1 4 4 C 1.38173 * 120.02313 * 266.14286 * 3 2 1 5 5 C 1.38245 * 120.05442 * 180.02562 * 4 3 2 6 6 C 1.38297 * 120.11010 * 359.97438 * 5 4 3 7 7 C 1.38118 * 120.05477 * 359.76672 * 6 5 4 8 8 C 1.50696 * 120.02833 * 180.27776 * 7 6 5 9 9 C 1.38709 * 120.03327 * 86.16786 * 3 2 1 10 10 O 1.35903 * 120.05079 * 359.97438 * 9 3 2 11 11 C 1.42904 * 116.99564 * 95.67558 * 10 9 3 12 12 H 1.08997 * 110.78143 * 14.81234 * 11 10 9 13 13 C 1.55161 * 110.71743 * 138.04883 * 11 10 9 14 14 C 1.54906 * 101.57957 * 153.86511 * 13 11 10 15 15 N 1.47423 * 104.93000 * 322.93498 * 14 13 11 16 16 C 1.36937 * 125.64805 * 204.15392 * 15 14 13 17 17 H 1.08008 * 119.99909 * 180.02562 * 16 15 14 18 18 C 1.38814 * 120.00440 * 0.02654 * 16 15 14 19 19 N 1.31616 * 119.99397 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00146 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47433 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.46994 * 120.00319 * 20 18 16 23 23 H 1.48496 * 109.47240 * 239.99937 * 20 18 16 24 24 C 1.47287 * 108.55975 * 24.15601 * 15 14 13 25 25 H 1.09002 * 109.47103 * 300.00092 * 1 2 3 26 26 H 1.09001 * 109.47253 * 60.00378 * 1 2 3 27 27 H 1.09005 * 109.46926 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47601 * 240.00014 * 2 1 3 29 29 H 1.09001 * 109.47253 * 119.99622 * 2 1 3 30 30 H 1.07993 * 119.97309 * 0.04216 * 4 3 2 31 31 H 1.07992 * 119.94448 * 179.97438 * 5 4 3 32 32 H 1.07994 * 119.97059 * 180.02562 * 6 5 4 33 33 H 1.08996 * 109.47543 * 270.22989 * 8 7 6 34 34 H 1.09001 * 109.47285 * 30.23238 * 8 7 6 35 35 H 1.09000 * 109.47465 * 150.23142 * 8 7 6 36 36 H 1.09002 * 111.00115 * 35.79201 * 13 11 10 37 37 H 1.08999 * 111.00608 * 271.94131 * 13 11 10 38 38 H 1.09001 * 110.36602 * 81.83313 * 14 13 11 39 39 H 1.09008 * 110.36776 * 204.04539 * 14 13 11 40 40 H 0.96997 * 119.99872 * 179.97438 * 19 18 16 41 41 H 1.08993 * 109.86014 * 239.50187 * 24 15 14 42 42 H 1.09000 * 110.00278 * 118.42272 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3385 2.0459 -1.1936 5 6 2.7998 3.3491 -1.1943 6 6 2.9554 4.0306 -0.0011 7 6 2.6455 3.4121 1.1943 8 6 2.8094 4.1574 2.4938 9 6 2.1880 2.1022 1.1982 10 8 1.8873 1.4896 2.3734 11 6 2.9681 0.8796 3.0820 12 1 3.9273 1.2221 2.6938 13 6 2.8579 1.1655 4.6031 14 6 3.6097 -0.0488 5.2030 15 7 3.2534 -1.1839 4.3324 16 6 3.2773 -2.5047 4.6933 17 1 2.9972 -3.2648 3.9790 18 6 3.6614 -2.8666 5.9772 19 7 4.0022 -1.9402 6.8478 20 14 3.6932 -4.6682 6.4697 21 1 3.2687 -5.5039 5.3179 22 1 5.0712 -5.0466 6.8739 23 1 2.7658 -4.8865 7.6087 24 6 2.8682 -0.6588 3.0114 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.2172 1.5160 -2.1268 31 1 3.0391 3.8357 -2.1283 32 1 3.3156 5.0488 -0.0043 33 1 3.8166 3.9991 2.8790 34 1 2.6481 5.2221 2.3248 35 1 2.0818 3.7902 3.2176 36 1 1.8163 1.1776 4.9239 37 1 3.3557 2.1000 4.8621 38 1 4.6859 0.1228 5.1813 39 1 3.2764 -0.2347 6.2241 40 1 4.2702 -2.1930 7.7451 41 1 1.8448 -0.9535 2.7798 42 1 3.5455 -1.0394 2.2469 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233931055.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:25 Heat of formation + Delta-G solvation = 1.616664 kcal Electronic energy + Delta-G solvation = -21851.706765 eV Core-core repulsion = 18797.303100 eV Total energy + Delta-G solvation = -3054.403665 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.21107 -37.83779 -35.89603 -34.44657 -32.32281 -31.60216 -29.39904 -28.86363 -27.26421 -26.66313 -24.42955 -23.72946 -21.82381 -20.42674 -20.27407 -20.07845 -17.64885 -16.99583 -16.04409 -15.48617 -15.07136 -14.61956 -14.41816 -13.89565 -13.71054 -13.55087 -13.30175 -13.03677 -12.74371 -12.47004 -12.32505 -12.27406 -11.87702 -11.73134 -11.54698 -11.44369 -11.18870 -10.99361 -10.82122 -10.71017 -10.67481 -10.38298 -10.08953 -9.77295 -9.57877 -9.26047 -8.67273 -8.56328 -8.35821 -6.85692 -5.66522 -3.08549 1.28721 1.37106 3.39794 3.44979 3.47683 3.53151 4.14053 4.49400 4.78402 4.84124 4.94770 5.23333 5.33131 5.35247 5.38958 5.44413 5.51472 5.52127 5.57103 5.66388 5.70352 5.73552 5.75852 5.85440 5.97743 6.05443 6.15016 6.27307 6.32921 6.41894 6.47678 6.51336 6.52620 6.54389 6.62202 6.65838 6.72842 6.96366 7.46992 7.61524 7.81218 7.96602 8.33720 9.20119 9.80621 10.44921 11.37611 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.025634 B = 0.004733 C = 0.004199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.031569 B = 5914.540171 C = 6666.273322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.092 4.092 3 C -0.091 4.091 4 C -0.116 4.116 5 C -0.127 4.127 6 C -0.118 4.118 7 C -0.105 4.105 8 C -0.113 4.113 9 C 0.105 3.895 10 O -0.322 6.322 11 C 0.085 3.915 12 H 0.065 0.935 13 C -0.143 4.143 14 C 0.152 3.848 15 N -0.601 5.601 16 C -0.221 4.221 17 H 0.079 0.921 18 C -0.011 4.011 19 N -0.923 5.923 20 Si 0.915 3.085 21 H -0.280 1.280 22 H -0.290 1.290 23 H -0.290 1.290 24 C 0.123 3.877 25 H 0.060 0.940 26 H 0.048 0.952 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.087 0.913 30 H 0.122 0.878 31 H 0.120 0.880 32 H 0.121 0.879 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.061 0.939 38 H 0.013 0.987 39 H 0.112 0.888 40 H 0.252 0.748 41 H 0.038 0.962 42 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.164 11.305 -13.478 17.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.129 4.129 3 C -0.091 4.091 4 C -0.134 4.134 5 C -0.145 4.145 6 C -0.136 4.136 7 C -0.105 4.105 8 C -0.170 4.170 9 C 0.061 3.939 10 O -0.239 6.239 11 C 0.029 3.971 12 H 0.083 0.917 13 C -0.182 4.182 14 C 0.027 3.973 15 N -0.328 5.328 16 C -0.349 4.349 17 H 0.096 0.904 18 C -0.206 4.206 19 N -0.572 5.572 20 Si 0.746 3.254 21 H -0.205 1.205 22 H -0.217 1.217 23 H -0.217 1.217 24 C -0.003 4.003 25 H 0.079 0.921 26 H 0.067 0.933 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.105 0.895 30 H 0.140 0.860 31 H 0.138 0.862 32 H 0.139 0.861 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.031 0.969 39 H 0.130 0.870 40 H 0.063 0.937 41 H 0.056 0.944 42 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -3.292 11.139 -13.207 17.589 hybrid contribution 0.354 -0.824 0.024 0.898 sum -2.938 10.315 -13.183 16.995 Atomic orbital electron populations 1.21665 0.94581 1.01626 1.01867 1.20617 0.96500 0.92220 1.03530 1.20245 0.99545 0.96791 0.92531 1.20899 1.00347 0.95061 0.97057 1.21058 1.00697 0.94887 0.97837 1.20876 1.01177 0.99884 0.91657 1.20275 0.99533 0.94511 0.96216 1.20723 1.02777 0.99015 0.94460 1.18462 0.98826 0.90684 0.85927 1.86055 1.34610 1.71569 1.31671 1.23503 0.87617 0.93404 0.92574 0.91713 1.23277 1.02171 1.00172 0.92567 1.21961 0.94896 0.82314 0.98126 1.44451 1.78732 1.02794 1.06859 1.19132 1.38126 0.81474 0.96150 0.90354 1.24787 1.01602 0.97986 0.96262 1.69780 1.51894 1.30271 1.05225 0.85981 0.77257 0.83962 0.78210 1.20498 1.21746 1.21682 1.21693 0.98131 0.90821 0.89694 0.92068 0.93268 0.92481 0.91525 0.89453 0.86041 0.86196 0.86082 0.91289 0.91784 0.90550 0.90970 0.91984 0.96863 0.87049 0.93727 0.94420 0.95935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.89 37.16 0.37 -1.42 16 2 C -0.09 -1.27 5.80 -27.88 -0.16 -1.43 16 3 C -0.09 -1.30 5.15 -104.47 -0.54 -1.83 16 4 C -0.12 -1.40 9.68 -39.60 -0.38 -1.78 16 5 C -0.13 -1.41 10.04 -39.56 -0.40 -1.81 16 6 C -0.12 -1.39 9.70 -39.60 -0.38 -1.77 16 7 C -0.10 -1.44 5.89 -104.48 -0.62 -2.06 16 8 C -0.11 -1.38 9.64 36.00 0.35 -1.04 16 9 C 0.11 1.64 5.49 -39.22 -0.22 1.43 16 10 O -0.32 -5.67 8.09 -19.43 -0.16 -5.82 16 11 C 0.08 1.59 3.39 -24.89 -0.08 1.51 16 12 H 0.06 1.19 7.83 -51.93 -0.41 0.79 16 13 C -0.14 -2.81 6.81 -24.58 -0.17 -2.98 16 14 C 0.15 3.72 5.89 -2.53 -0.01 3.71 16 15 N -0.60 -15.68 3.40 -169.86 -0.58 -16.26 16 16 C -0.22 -6.21 10.28 -15.06 -0.15 -6.36 16 17 H 0.08 2.13 7.83 -52.48 -0.41 1.72 16 18 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 19 N -0.92 -26.89 10.09 55.49 0.56 -26.34 16 20 Si 0.92 22.12 29.55 -169.99 -5.02 17.10 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 C 0.12 2.67 5.39 -2.92 -0.02 2.65 16 25 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.80 8.06 -51.93 -0.42 0.38 16 29 H 0.09 1.40 4.60 -51.93 -0.24 1.16 16 30 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 31 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 32 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 35 H 0.08 1.02 7.53 -51.93 -0.39 0.63 16 36 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 37 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 38 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.11 3.05 5.87 -51.92 -0.30 2.74 16 40 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 41 H 0.04 0.83 7.16 -51.93 -0.37 0.46 16 42 H 0.02 0.49 8.01 -51.93 -0.42 0.08 16 LS Contribution 335.45 15.07 5.06 5.06 Total: -1.00 -30.09 335.45 -9.40 -39.49 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -6.74 Total: 0.36 kcal Atomic # 6 Polarization: -11.08 SS G_CDS: -2.51 Total: -13.59 kcal Atomic # 7 Polarization: -42.58 SS G_CDS: -0.02 Total: -42.59 kcal Atomic # 8 Polarization: -5.67 SS G_CDS: -0.16 Total: -5.82 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.09 -9.40 -39.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233931055.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.109 kcal (2) G-P(sol) polarization free energy of solvation -30.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds