Wall clock time and date at job start Mon Mar 30 2020 02:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50704 * 109.46816 * 2 1 4 4 C 1.38173 * 120.02313 * 266.14286 * 3 2 1 5 5 C 1.38245 * 120.05442 * 180.02562 * 4 3 2 6 6 C 1.38297 * 120.11010 * 359.97438 * 5 4 3 7 7 C 1.38118 * 120.05477 * 359.76672 * 6 5 4 8 8 C 1.50696 * 120.02833 * 180.27776 * 7 6 5 9 9 C 1.38709 * 120.03327 * 86.16786 * 3 2 1 10 10 O 1.35903 * 120.05079 * 359.97438 * 9 3 2 11 11 C 1.42904 * 116.99564 * 95.67558 * 10 9 3 12 12 H 1.08997 * 110.78143 * 14.81234 * 11 10 9 13 13 C 1.55161 * 110.71743 * 138.04883 * 11 10 9 14 14 C 1.54906 * 101.57957 * 153.86511 * 13 11 10 15 15 N 1.47423 * 104.93000 * 322.93498 * 14 13 11 16 16 C 1.36937 * 125.64805 * 204.15392 * 15 14 13 17 17 H 1.08008 * 119.99909 * 180.02562 * 16 15 14 18 18 C 1.38814 * 120.00440 * 0.02654 * 16 15 14 19 19 N 1.31616 * 119.99397 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00146 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47433 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.46994 * 120.00319 * 20 18 16 23 23 H 1.48496 * 109.47240 * 239.99937 * 20 18 16 24 24 C 1.47287 * 108.55975 * 24.15601 * 15 14 13 25 25 H 1.09002 * 109.47103 * 300.00092 * 1 2 3 26 26 H 1.09001 * 109.47253 * 60.00378 * 1 2 3 27 27 H 1.09005 * 109.46926 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47601 * 240.00014 * 2 1 3 29 29 H 1.09001 * 109.47253 * 119.99622 * 2 1 3 30 30 H 1.07993 * 119.97309 * 0.04216 * 4 3 2 31 31 H 1.07992 * 119.94448 * 179.97438 * 5 4 3 32 32 H 1.07994 * 119.97059 * 180.02562 * 6 5 4 33 33 H 1.08996 * 109.47543 * 270.22989 * 8 7 6 34 34 H 1.09001 * 109.47285 * 30.23238 * 8 7 6 35 35 H 1.09000 * 109.47465 * 150.23142 * 8 7 6 36 36 H 1.09002 * 111.00115 * 35.79201 * 13 11 10 37 37 H 1.08999 * 111.00608 * 271.94131 * 13 11 10 38 38 H 1.09001 * 110.36602 * 81.83313 * 14 13 11 39 39 H 1.09008 * 110.36776 * 204.04539 * 14 13 11 40 40 H 0.96997 * 119.99872 * 179.97438 * 19 18 16 41 41 H 1.08993 * 109.86014 * 239.50187 * 24 15 14 42 42 H 1.09000 * 110.00278 * 118.42272 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3385 2.0459 -1.1936 5 6 2.7998 3.3491 -1.1943 6 6 2.9554 4.0306 -0.0011 7 6 2.6455 3.4121 1.1943 8 6 2.8094 4.1574 2.4938 9 6 2.1880 2.1022 1.1982 10 8 1.8873 1.4896 2.3734 11 6 2.9681 0.8796 3.0820 12 1 3.9273 1.2221 2.6938 13 6 2.8579 1.1655 4.6031 14 6 3.6097 -0.0488 5.2030 15 7 3.2534 -1.1839 4.3324 16 6 3.2773 -2.5047 4.6933 17 1 2.9972 -3.2648 3.9790 18 6 3.6614 -2.8666 5.9772 19 7 4.0022 -1.9402 6.8478 20 14 3.6932 -4.6682 6.4697 21 1 3.2687 -5.5039 5.3179 22 1 5.0712 -5.0466 6.8739 23 1 2.7658 -4.8865 7.6087 24 6 2.8682 -0.6588 3.0114 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.2172 1.5160 -2.1268 31 1 3.0391 3.8357 -2.1283 32 1 3.3156 5.0488 -0.0043 33 1 3.8166 3.9991 2.8790 34 1 2.6481 5.2221 2.3248 35 1 2.0818 3.7902 3.2176 36 1 1.8163 1.1776 4.9239 37 1 3.3557 2.1000 4.8621 38 1 4.6859 0.1228 5.1813 39 1 3.2764 -0.2347 6.2241 40 1 4.2702 -2.1930 7.7451 41 1 1.8448 -0.9535 2.7798 42 1 3.5455 -1.0394 2.2469 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233931055.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:25 Heat of formation + Delta-G solvation = -13.611519 kcal Electronic energy + Delta-G solvation = -21852.367108 eV Core-core repulsion = 18797.303100 eV Total energy + Delta-G solvation = -3055.064008 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.34899 -39.28642 -37.44804 -35.45143 -34.28388 -32.62505 -31.21194 -30.07251 -28.90068 -27.72353 -26.37518 -24.77341 -22.97717 -22.12882 -21.64250 -21.43082 -19.08616 -18.80756 -17.17553 -16.84856 -16.48691 -16.29396 -15.91700 -15.21864 -15.03471 -14.74765 -14.45646 -14.29616 -14.18594 -13.76554 -13.62768 -13.60023 -13.38187 -13.13694 -12.96865 -12.78108 -12.67647 -12.43224 -12.26511 -12.19070 -11.99688 -11.93459 -11.77841 -11.62016 -11.36572 -10.78893 -10.66171 -9.51284 -9.40696 -8.94617 -7.80294 -5.25922 0.26584 0.41845 1.46499 1.47665 1.58167 2.39047 2.51954 2.99934 3.30859 3.62720 3.76171 3.82261 3.89965 4.01921 4.07850 4.10190 4.31365 4.41960 4.44582 4.50301 4.59396 4.60850 4.68766 4.75760 4.79957 4.82011 4.90479 4.95211 4.97953 5.07099 5.09824 5.17331 5.31984 5.37707 5.43082 5.55885 5.56216 5.57826 5.70218 5.74439 5.94824 6.26008 6.69532 7.06781 7.72042 8.36200 9.22071 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.025634 B = 0.004733 C = 0.004199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.031569 B = 5914.540171 C = 6666.273322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.093 4.093 3 C -0.104 4.104 4 C -0.119 4.119 5 C -0.117 4.117 6 C -0.119 4.119 7 C -0.115 4.115 8 C -0.112 4.112 9 C 0.065 3.935 10 O -0.328 6.328 11 C 0.104 3.896 12 H 0.070 0.930 13 C -0.127 4.127 14 C 0.155 3.845 15 N -0.623 5.623 16 C -0.242 4.242 17 H 0.080 0.920 18 C -0.064 4.064 19 N -0.948 5.948 20 Si 0.983 3.017 21 H -0.268 1.268 22 H -0.290 1.290 23 H -0.289 1.289 24 C 0.125 3.875 25 H 0.039 0.961 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.084 0.916 29 H 0.059 0.941 30 H 0.145 0.855 31 H 0.154 0.846 32 H 0.150 0.850 33 H 0.070 0.930 34 H 0.088 0.912 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.091 0.909 38 H -0.005 1.005 39 H 0.081 0.919 40 H 0.249 0.751 41 H 0.032 0.968 42 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.124 12.519 -15.767 20.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.130 4.130 3 C -0.104 4.104 4 C -0.137 4.137 5 C -0.135 4.135 6 C -0.137 4.137 7 C -0.116 4.116 8 C -0.169 4.169 9 C 0.022 3.978 10 O -0.244 6.244 11 C 0.048 3.952 12 H 0.088 0.912 13 C -0.166 4.166 14 C 0.030 3.970 15 N -0.350 5.350 16 C -0.370 4.370 17 H 0.098 0.902 18 C -0.256 4.256 19 N -0.598 5.598 20 Si 0.811 3.189 21 H -0.192 1.192 22 H -0.217 1.217 23 H -0.216 1.216 24 C -0.001 4.001 25 H 0.058 0.942 26 H 0.085 0.915 27 H 0.081 0.919 28 H 0.103 0.897 29 H 0.077 0.923 30 H 0.163 0.837 31 H 0.172 0.828 32 H 0.167 0.833 33 H 0.088 0.912 34 H 0.106 0.894 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.110 0.890 38 H 0.013 0.987 39 H 0.099 0.901 40 H 0.059 0.941 41 H 0.050 0.950 42 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -3.266 12.370 -15.526 20.118 hybrid contribution 0.335 -1.134 0.610 1.330 sum -2.930 11.236 -14.917 18.904 Atomic orbital electron populations 1.21616 0.94007 1.01943 1.01624 1.20609 0.97048 0.92386 1.02964 1.20396 1.00041 0.96922 0.93091 1.21217 0.99708 0.95762 0.97047 1.21505 0.98590 0.94342 0.99068 1.21250 1.00289 1.01134 0.91023 1.20517 0.99392 0.93960 0.97701 1.20737 1.02284 1.00293 0.93562 1.18797 1.01828 0.91806 0.85386 1.86051 1.33890 1.71652 1.32841 1.23107 0.88512 0.91324 0.92238 0.91177 1.23068 1.01338 0.99185 0.92966 1.21744 0.94243 0.84066 0.96972 1.44750 1.78793 1.02720 1.08784 1.19484 1.38220 0.82753 0.96585 0.90234 1.25644 1.01525 1.02223 0.96212 1.70020 1.52471 1.32047 1.05248 0.84947 0.76952 0.79125 0.77906 1.19199 1.21667 1.21582 1.21767 0.97412 0.93132 0.87750 0.94197 0.91498 0.91908 0.89745 0.92259 0.83698 0.82800 0.83279 0.91163 0.89361 0.92220 0.91496 0.89026 0.98727 0.90138 0.94111 0.95042 0.95958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.35 9.89 71.98 0.71 -2.64 16 2 C -0.09 -2.52 5.80 29.85 0.17 -2.34 16 3 C -0.10 -2.83 5.15 -19.77 -0.10 -2.93 16 4 C -0.12 -2.53 9.68 22.26 0.22 -2.31 16 5 C -0.12 -2.13 10.04 22.29 0.22 -1.91 16 6 C -0.12 -2.38 9.70 22.26 0.22 -2.16 16 7 C -0.12 -2.95 5.89 -19.77 -0.12 -3.07 16 8 C -0.11 -2.55 9.64 71.23 0.69 -1.86 16 9 C 0.07 1.98 5.49 22.51 0.12 2.11 16 10 O -0.33 -11.59 8.09 -92.45 -0.75 -12.34 16 11 C 0.10 3.97 3.39 31.78 0.11 4.08 16 12 H 0.07 2.58 7.83 -2.39 -0.02 2.56 16 13 C -0.13 -5.05 6.81 31.99 0.22 -4.83 16 14 C 0.15 7.86 5.89 86.85 0.51 8.37 16 15 N -0.62 -33.58 3.40 -691.31 -2.35 -35.93 16 16 C -0.24 -13.96 10.28 84.03 0.86 -13.10 16 17 H 0.08 4.43 7.83 -2.91 -0.02 4.40 16 18 C -0.06 -3.65 5.49 84.86 0.47 -3.18 16 19 N -0.95 -56.92 10.09 21.65 0.22 -56.71 16 20 Si 0.98 46.13 29.55 68.60 2.03 48.15 16 21 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 22 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 23 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 24 C 0.12 5.59 5.39 86.68 0.47 6.06 16 25 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 28 H 0.08 1.91 8.06 -2.38 -0.02 1.89 16 29 H 0.06 1.93 4.60 -2.39 -0.01 1.92 16 30 H 0.15 2.31 8.06 -2.91 -0.02 2.29 16 31 H 0.15 1.76 8.06 -2.91 -0.02 1.73 16 32 H 0.15 2.10 8.06 -2.91 -0.02 2.08 16 33 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.09 1.52 8.09 -2.39 -0.02 1.50 16 35 H 0.06 1.54 7.53 -2.39 -0.02 1.52 16 36 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 37 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 38 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 39 H 0.08 4.61 5.87 -2.38 -0.01 4.59 16 40 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 41 H 0.03 1.45 7.16 -2.39 -0.02 1.43 16 42 H 0.02 1.00 8.01 -2.39 -0.02 0.98 16 Total: -1.00 -66.70 335.45 4.90 -61.81 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: 0.98 Total: 14.75 kcal Atomic # 6 Polarization: -24.50 SS G_CDS: 4.77 Total: -19.73 kcal Atomic # 7 Polarization: -90.50 SS G_CDS: -2.13 Total: -92.64 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: -0.75 Total: -12.34 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.15 kcal Total: -66.70 4.90 -61.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233931055.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.194 kcal (2) G-P(sol) polarization free energy of solvation -66.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds