Wall clock time and date at job start Mon Mar 30 2020 02:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50702 * 109.47249 * 2 1 4 4 C 1.38173 * 120.02688 * 261.49571 * 3 2 1 5 5 C 1.38242 * 120.05207 * 180.25585 * 4 3 2 6 6 C 1.38286 * 120.11507 * 359.76622 * 5 4 3 7 7 C 1.38122 * 120.05339 * 359.95507 * 6 5 4 8 8 C 1.50709 * 120.02847 * 179.97438 * 7 6 5 9 9 C 1.38712 * 120.02754 * 81.22223 * 3 2 1 10 10 O 1.35896 * 120.05559 * 359.97438 * 9 3 2 11 11 C 1.42894 * 117.00141 * 83.94737 * 10 9 3 12 12 H 1.09002 * 110.88906 * 333.22493 * 11 10 9 13 13 C 1.55162 * 111.00395 * 209.34376 * 11 10 9 14 14 C 1.54322 * 102.94143 * 206.38660 * 13 11 10 15 15 N 1.47021 * 107.27483 * 22.19414 * 14 13 11 16 16 C 1.36932 * 125.65181 * 181.02404 * 15 14 13 17 17 H 1.08001 * 120.00019 * 180.02562 * 16 15 14 18 18 C 1.38815 * 119.99965 * 0.29740 * 16 15 14 19 19 N 1.31626 * 119.99917 * 359.72892 * 18 16 15 20 20 Si 1.86794 * 120.00069 * 179.72554 * 18 16 15 21 21 H 1.48500 * 109.47360 * 90.00398 * 20 18 16 22 22 H 1.48506 * 109.46841 * 210.00029 * 20 18 16 23 23 H 1.48496 * 109.47145 * 329.99741 * 20 18 16 24 24 C 1.47427 * 108.70232 * 1.28676 * 15 14 13 25 25 H 1.08998 * 109.47228 * 295.05493 * 1 2 3 26 26 H 1.09010 * 109.47147 * 55.05177 * 1 2 3 27 27 H 1.08995 * 109.47289 * 175.05365 * 1 2 3 28 28 H 1.08997 * 109.47521 * 240.00069 * 2 1 3 29 29 H 1.08998 * 109.47540 * 120.00023 * 2 1 3 30 30 H 1.07997 * 119.97545 * 359.97438 * 4 3 2 31 31 H 1.07999 * 119.94263 * 179.74617 * 5 4 3 32 32 H 1.08003 * 119.97711 * 179.97438 * 6 5 4 33 33 H 1.08998 * 109.46754 * 270.02624 * 8 7 6 34 34 H 1.09005 * 109.46835 * 30.02259 * 8 7 6 35 35 H 1.09000 * 109.47030 * 150.02125 * 8 7 6 36 36 H 1.08998 * 110.71652 * 88.02179 * 13 11 10 37 37 H 1.08993 * 110.87023 * 324.81902 * 13 11 10 38 38 H 1.09003 * 109.87950 * 262.77539 * 14 13 11 39 39 H 1.09000 * 109.88346 * 141.61197 * 14 13 11 40 40 H 0.96994 * 119.99661 * 180.02562 * 19 18 16 41 41 H 1.08992 * 110.36805 * 94.47862 * 24 15 14 42 42 H 1.08998 * 110.36841 * 216.81191 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4296 2.0137 -1.1831 5 6 2.8955 3.3153 -1.1830 6 6 2.9606 4.0287 -0.0001 7 6 2.5593 3.4424 1.1843 8 6 2.6311 4.2203 2.4731 9 6 2.0909 2.1364 1.1869 10 8 1.6950 1.5574 2.3509 11 6 2.6563 0.7504 3.0339 12 1 3.3825 0.3356 2.3348 13 6 1.9616 -0.3740 3.8466 14 6 2.9731 -0.6591 4.9766 15 7 3.8162 0.5368 5.1199 16 6 4.8520 0.6819 6.0038 17 1 5.4128 1.6045 6.0318 18 6 5.1848 -0.3589 6.8599 19 7 4.5013 -1.4833 6.8258 20 14 6.6026 -0.1638 8.0603 21 1 6.0953 0.3956 9.3390 22 1 7.2242 -1.4888 8.3118 23 1 7.6155 0.7568 7.4845 24 6 3.3578 1.5563 4.1587 25 1 -0.3633 0.4352 0.9309 26 1 -0.3634 0.5887 -0.8424 27 1 -0.3633 -1.0238 -0.0886 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8899 30 1 2.3804 1.4584 -2.1081 31 1 3.2094 3.7756 -2.1081 32 1 3.3254 5.0453 -0.0025 33 1 3.6048 4.0647 2.9376 34 1 2.4931 5.2814 2.2652 35 1 1.8473 3.8775 3.1486 36 1 1.8127 -1.2601 3.2296 37 1 1.0130 -0.0274 4.2566 38 1 3.5902 -1.5184 4.7137 39 1 2.4427 -0.8526 5.9090 40 1 4.7337 -2.2103 7.4243 41 1 2.6537 2.2379 4.6357 42 1 4.2075 2.1076 3.7563 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233931056.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:29 Heat of formation + Delta-G solvation = -0.435938 kcal Electronic energy + Delta-G solvation = -21869.388080 eV Core-core repulsion = 18814.895408 eV Total energy + Delta-G solvation = -3054.492672 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.19969 -37.81990 -35.91259 -34.45257 -32.31514 -31.60673 -29.44104 -28.76419 -27.47779 -26.35319 -24.57186 -23.70893 -21.75744 -20.48990 -20.27082 -20.07835 -17.58844 -16.96303 -16.08370 -15.51638 -15.02400 -14.57910 -14.38357 -13.87080 -13.73067 -13.58488 -13.20881 -13.02181 -12.78468 -12.65308 -12.39841 -12.06500 -11.95573 -11.76653 -11.62452 -11.39931 -11.15753 -10.95247 -10.84969 -10.75512 -10.62662 -10.28360 -10.11046 -9.82263 -9.73315 -9.25916 -8.61023 -8.54479 -8.33427 -6.85253 -5.72368 -3.06384 1.30713 1.39164 3.39987 3.44569 3.46728 3.54321 4.15448 4.50762 4.76635 4.83207 4.98210 5.20518 5.34041 5.36640 5.40863 5.42787 5.46542 5.52699 5.56891 5.69557 5.71514 5.74817 5.84404 5.87380 5.95399 5.98853 6.10052 6.26427 6.29589 6.37100 6.46079 6.49386 6.50952 6.55032 6.64808 6.67211 6.73167 6.97542 7.53666 7.58898 7.78569 7.95937 8.24105 9.20192 9.80256 10.45519 11.39404 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.023822 B = 0.004813 C = 0.004295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.105687 B = 5816.143707 C = 6517.748797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.082 4.082 3 C -0.101 4.101 4 C -0.116 4.116 5 C -0.127 4.127 6 C -0.117 4.117 7 C -0.095 4.095 8 C -0.114 4.114 9 C 0.107 3.893 10 O -0.324 6.324 11 C 0.080 3.920 12 H 0.068 0.932 13 C -0.139 4.139 14 C 0.179 3.821 15 N -0.603 5.603 16 C -0.228 4.228 17 H 0.078 0.922 18 C -0.007 4.007 19 N -0.922 5.922 20 Si 0.913 3.087 21 H -0.288 1.288 22 H -0.290 1.290 23 H -0.281 1.281 24 C 0.123 3.877 25 H 0.063 0.937 26 H 0.050 0.950 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.121 0.879 31 H 0.120 0.880 32 H 0.122 0.878 33 H 0.073 0.927 34 H 0.061 0.939 35 H 0.076 0.924 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.049 0.951 39 H 0.047 0.953 40 H 0.253 0.747 41 H 0.029 0.971 42 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.131 6.636 -15.382 17.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.119 4.119 3 C -0.101 4.101 4 C -0.134 4.134 5 C -0.145 4.145 6 C -0.135 4.135 7 C -0.096 4.096 8 C -0.171 4.171 9 C 0.063 3.937 10 O -0.241 6.241 11 C 0.024 3.976 12 H 0.086 0.914 13 C -0.177 4.177 14 C 0.054 3.946 15 N -0.331 5.331 16 C -0.356 4.356 17 H 0.096 0.904 18 C -0.204 4.204 19 N -0.570 5.570 20 Si 0.743 3.257 21 H -0.215 1.215 22 H -0.216 1.216 23 H -0.207 1.207 24 C -0.004 4.004 25 H 0.082 0.918 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.094 0.906 30 H 0.139 0.861 31 H 0.138 0.862 32 H 0.140 0.860 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.095 0.905 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.047 0.953 42 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -6.196 6.503 -15.118 17.585 hybrid contribution 0.978 0.045 0.505 1.101 sum -5.218 6.548 -14.613 16.842 Atomic orbital electron populations 1.21682 0.94513 1.01359 1.02343 1.20456 0.96526 0.92227 1.02725 1.20263 1.00013 0.96823 0.93021 1.20871 1.00238 0.95295 0.97026 1.21052 1.00767 0.94717 0.97930 1.20903 1.00834 0.99951 0.91818 1.20247 0.98174 0.94853 0.96312 1.20785 1.03459 0.98442 0.94405 1.18414 0.98061 0.91291 0.85903 1.85994 1.38780 1.65724 1.33588 1.23753 0.89819 0.91341 0.92675 0.91407 1.23048 1.00300 0.96081 0.98286 1.21175 0.89808 0.89982 0.93624 1.44357 1.36249 1.11733 1.40779 1.19056 1.06030 0.99586 1.10968 0.90402 1.24806 0.99610 0.96108 0.99843 1.69952 1.41714 1.04701 1.40633 0.86105 0.81664 0.76827 0.81088 1.21544 1.21639 1.20685 1.21995 0.96056 0.92373 0.89958 0.91824 0.93109 0.92630 0.91489 0.90592 0.86132 0.86205 0.85997 0.90818 0.91968 0.90501 0.91806 0.91287 0.93278 0.93472 0.93697 0.95286 0.94365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.89 37.15 0.37 -1.26 16 2 C -0.08 -1.03 5.74 -27.89 -0.16 -1.19 16 3 C -0.10 -1.40 5.15 -104.47 -0.54 -1.93 16 4 C -0.12 -1.39 9.67 -39.60 -0.38 -1.77 16 5 C -0.13 -1.43 10.04 -39.56 -0.40 -1.83 16 6 C -0.12 -1.43 9.70 -39.61 -0.38 -1.81 16 7 C -0.10 -1.37 5.89 -104.47 -0.62 -1.98 16 8 C -0.11 -1.54 8.98 36.01 0.32 -1.22 16 9 C 0.11 1.67 5.55 -39.22 -0.22 1.46 16 10 O -0.32 -5.59 8.34 -19.41 -0.16 -5.75 16 11 C 0.08 1.51 2.61 -24.46 -0.06 1.44 16 12 H 0.07 1.30 7.62 -51.93 -0.40 0.90 16 13 C -0.14 -2.69 6.68 -24.89 -0.17 -2.85 16 14 C 0.18 4.38 5.37 -3.07 -0.02 4.37 16 15 N -0.60 -15.67 3.39 -169.93 -0.58 -16.24 16 16 C -0.23 -6.42 10.28 -15.06 -0.15 -6.58 16 17 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 18 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 19 N -0.92 -27.13 10.31 55.49 0.57 -26.55 16 20 Si 0.91 22.16 29.55 -169.99 -5.02 17.13 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 C 0.12 2.64 5.98 -2.40 -0.01 2.62 16 25 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.05 0.54 8.14 -51.92 -0.42 0.12 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.72 8.02 -51.93 -0.42 0.30 16 29 H 0.08 1.06 6.58 -51.93 -0.34 0.72 16 30 H 0.12 1.16 8.05 -52.49 -0.42 0.74 16 31 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 32 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 33 H 0.07 1.04 7.29 -51.93 -0.38 0.66 16 34 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 35 H 0.08 1.13 7.37 -51.93 -0.38 0.74 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 38 H 0.05 1.31 7.37 -51.93 -0.38 0.93 16 39 H 0.05 1.27 7.51 -51.93 -0.39 0.88 16 40 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 41 H 0.03 0.63 7.97 -51.93 -0.41 0.22 16 42 H 0.04 0.81 7.48 -51.93 -0.39 0.42 16 LS Contribution 336.26 15.07 5.07 5.07 Total: -1.00 -30.27 336.26 -9.48 -39.74 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -6.84 Total: -0.54 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: -2.52 Total: -12.86 kcal Atomic # 7 Polarization: -42.79 SS G_CDS: 0.00 Total: -42.80 kcal Atomic # 8 Polarization: -5.59 SS G_CDS: -0.16 Total: -5.75 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.27 -9.48 -39.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233931056.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.307 kcal (2) G-P(sol) polarization free energy of solvation -30.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds