Wall clock time and date at job start Mon Mar 30 2020 02:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50702 * 109.47249 * 2 1 4 4 C 1.38173 * 120.02688 * 261.49571 * 3 2 1 5 5 C 1.38242 * 120.05207 * 180.25585 * 4 3 2 6 6 C 1.38286 * 120.11507 * 359.76622 * 5 4 3 7 7 C 1.38122 * 120.05339 * 359.95507 * 6 5 4 8 8 C 1.50709 * 120.02847 * 179.97438 * 7 6 5 9 9 C 1.38712 * 120.02754 * 81.22223 * 3 2 1 10 10 O 1.35896 * 120.05559 * 359.97438 * 9 3 2 11 11 C 1.42894 * 117.00141 * 83.94737 * 10 9 3 12 12 H 1.09002 * 110.88906 * 333.22493 * 11 10 9 13 13 C 1.55162 * 111.00395 * 209.34376 * 11 10 9 14 14 C 1.54322 * 102.94143 * 206.38660 * 13 11 10 15 15 N 1.47021 * 107.27483 * 22.19414 * 14 13 11 16 16 C 1.36932 * 125.65181 * 181.02404 * 15 14 13 17 17 H 1.08001 * 120.00019 * 180.02562 * 16 15 14 18 18 C 1.38815 * 119.99965 * 0.29740 * 16 15 14 19 19 N 1.31626 * 119.99917 * 359.72892 * 18 16 15 20 20 Si 1.86794 * 120.00069 * 179.72554 * 18 16 15 21 21 H 1.48500 * 109.47360 * 90.00398 * 20 18 16 22 22 H 1.48506 * 109.46841 * 210.00029 * 20 18 16 23 23 H 1.48496 * 109.47145 * 329.99741 * 20 18 16 24 24 C 1.47427 * 108.70232 * 1.28676 * 15 14 13 25 25 H 1.08998 * 109.47228 * 295.05493 * 1 2 3 26 26 H 1.09010 * 109.47147 * 55.05177 * 1 2 3 27 27 H 1.08995 * 109.47289 * 175.05365 * 1 2 3 28 28 H 1.08997 * 109.47521 * 240.00069 * 2 1 3 29 29 H 1.08998 * 109.47540 * 120.00023 * 2 1 3 30 30 H 1.07997 * 119.97545 * 359.97438 * 4 3 2 31 31 H 1.07999 * 119.94263 * 179.74617 * 5 4 3 32 32 H 1.08003 * 119.97711 * 179.97438 * 6 5 4 33 33 H 1.08998 * 109.46754 * 270.02624 * 8 7 6 34 34 H 1.09005 * 109.46835 * 30.02259 * 8 7 6 35 35 H 1.09000 * 109.47030 * 150.02125 * 8 7 6 36 36 H 1.08998 * 110.71652 * 88.02179 * 13 11 10 37 37 H 1.08993 * 110.87023 * 324.81902 * 13 11 10 38 38 H 1.09003 * 109.87950 * 262.77539 * 14 13 11 39 39 H 1.09000 * 109.88346 * 141.61197 * 14 13 11 40 40 H 0.96994 * 119.99661 * 180.02562 * 19 18 16 41 41 H 1.08992 * 110.36805 * 94.47862 * 24 15 14 42 42 H 1.08998 * 110.36841 * 216.81191 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4296 2.0137 -1.1831 5 6 2.8955 3.3153 -1.1830 6 6 2.9606 4.0287 -0.0001 7 6 2.5593 3.4424 1.1843 8 6 2.6311 4.2203 2.4731 9 6 2.0909 2.1364 1.1869 10 8 1.6950 1.5574 2.3509 11 6 2.6563 0.7504 3.0339 12 1 3.3825 0.3356 2.3348 13 6 1.9616 -0.3740 3.8466 14 6 2.9731 -0.6591 4.9766 15 7 3.8162 0.5368 5.1199 16 6 4.8520 0.6819 6.0038 17 1 5.4128 1.6045 6.0318 18 6 5.1848 -0.3589 6.8599 19 7 4.5013 -1.4833 6.8258 20 14 6.6026 -0.1638 8.0603 21 1 6.0953 0.3956 9.3390 22 1 7.2242 -1.4888 8.3118 23 1 7.6155 0.7568 7.4845 24 6 3.3578 1.5563 4.1587 25 1 -0.3633 0.4352 0.9309 26 1 -0.3634 0.5887 -0.8424 27 1 -0.3633 -1.0238 -0.0886 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8899 30 1 2.3804 1.4584 -2.1081 31 1 3.2094 3.7756 -2.1081 32 1 3.3254 5.0453 -0.0025 33 1 3.6048 4.0647 2.9376 34 1 2.4931 5.2814 2.2652 35 1 1.8473 3.8775 3.1486 36 1 1.8127 -1.2601 3.2296 37 1 1.0130 -0.0274 4.2566 38 1 3.5902 -1.5184 4.7137 39 1 2.4427 -0.8526 5.9090 40 1 4.7337 -2.2103 7.4243 41 1 2.6537 2.2379 4.6357 42 1 4.2075 2.1076 3.7563 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233931056.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:29 Heat of formation + Delta-G solvation = -15.837650 kcal Electronic energy + Delta-G solvation = -21870.055948 eV Core-core repulsion = 18814.895408 eV Total energy + Delta-G solvation = -3055.160541 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.34301 -39.28551 -37.45651 -35.42423 -34.28071 -32.66312 -31.21573 -29.97205 -29.05705 -27.53534 -26.47874 -24.77615 -22.89252 -22.03906 -21.81076 -21.42079 -19.04748 -18.76721 -17.18902 -16.83037 -16.51323 -16.28433 -15.88410 -15.13649 -15.00947 -14.68844 -14.52183 -14.27449 -14.24801 -14.00484 -13.76146 -13.63269 -13.23107 -13.09768 -12.94175 -12.75491 -12.66276 -12.39095 -12.22993 -12.11352 -12.04793 -11.88488 -11.77820 -11.73407 -11.45939 -10.75097 -10.64722 -9.51302 -9.40121 -8.95564 -7.87843 -5.25016 0.26858 0.42087 1.45442 1.47740 1.56399 2.37782 2.52317 2.99955 3.31259 3.67194 3.78606 3.80886 3.89323 3.99600 4.07177 4.09982 4.30968 4.40714 4.44306 4.51561 4.57681 4.62167 4.66975 4.77653 4.78402 4.82796 4.88194 4.95540 4.99870 5.09062 5.11425 5.17507 5.33379 5.39630 5.41668 5.56087 5.58247 5.58372 5.68775 5.70141 5.94287 6.14638 6.68633 7.05905 7.71261 8.35836 9.22712 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.023822 B = 0.004813 C = 0.004295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.105687 B = 5816.143707 C = 6517.748797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.084 4.084 3 C -0.109 4.109 4 C -0.119 4.119 5 C -0.118 4.118 6 C -0.121 4.121 7 C -0.112 4.112 8 C -0.111 4.111 9 C 0.068 3.932 10 O -0.325 6.325 11 C 0.101 3.899 12 H 0.065 0.935 13 C -0.124 4.124 14 C 0.187 3.813 15 N -0.625 5.625 16 C -0.247 4.247 17 H 0.082 0.918 18 C -0.062 4.062 19 N -0.951 5.951 20 Si 0.981 3.019 21 H -0.285 1.285 22 H -0.292 1.292 23 H -0.268 1.268 24 C 0.124 3.876 25 H 0.042 0.958 26 H 0.060 0.940 27 H 0.069 0.931 28 H 0.087 0.913 29 H 0.056 0.944 30 H 0.148 0.852 31 H 0.154 0.846 32 H 0.146 0.854 33 H 0.062 0.938 34 H 0.086 0.914 35 H 0.057 0.943 36 H 0.088 0.912 37 H 0.075 0.925 38 H 0.020 0.980 39 H 0.014 0.986 40 H 0.249 0.751 41 H 0.027 0.973 42 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.846 7.842 -17.770 20.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.121 4.121 3 C -0.110 4.110 4 C -0.137 4.137 5 C -0.136 4.136 6 C -0.139 4.139 7 C -0.113 4.113 8 C -0.167 4.167 9 C 0.025 3.975 10 O -0.242 6.242 11 C 0.045 3.955 12 H 0.083 0.917 13 C -0.162 4.162 14 C 0.063 3.937 15 N -0.352 5.352 16 C -0.376 4.376 17 H 0.100 0.900 18 C -0.256 4.256 19 N -0.599 5.599 20 Si 0.809 3.191 21 H -0.212 1.212 22 H -0.218 1.218 23 H -0.193 1.193 24 C -0.001 4.001 25 H 0.061 0.939 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.106 0.894 29 H 0.075 0.925 30 H 0.166 0.834 31 H 0.172 0.828 32 H 0.164 0.836 33 H 0.080 0.920 34 H 0.105 0.895 35 H 0.076 0.924 36 H 0.106 0.894 37 H 0.094 0.906 38 H 0.038 0.962 39 H 0.032 0.968 40 H 0.058 0.942 41 H 0.045 0.955 42 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -5.925 7.740 -17.533 20.060 hybrid contribution 0.871 -0.239 1.133 1.450 sum -5.054 7.501 -16.400 18.728 Atomic orbital electron populations 1.21636 0.93842 1.02253 1.01649 1.20499 0.97096 0.91705 1.02776 1.20485 0.99986 0.97354 0.93154 1.21242 0.99267 0.95861 0.97282 1.21498 0.98865 0.94331 0.98874 1.21237 1.00158 1.01161 0.91320 1.20449 0.98746 0.94687 0.97376 1.20737 1.02057 0.99933 0.94008 1.18747 1.00868 0.92220 0.85678 1.85998 1.37990 1.65546 1.34625 1.23303 0.89732 0.90603 0.91875 0.91720 1.22853 0.98873 0.97559 0.96905 1.20912 0.89940 0.88961 0.93935 1.44651 1.36130 1.13074 1.41375 1.19448 1.06692 0.99859 1.11567 0.90019 1.25676 1.02297 0.95877 1.01709 1.70169 1.43160 1.05290 1.41309 0.85044 0.78690 0.76710 0.78668 1.21167 1.21807 1.19325 1.22066 0.96179 0.91812 0.90066 0.93872 0.92094 0.91242 0.89407 0.92518 0.83430 0.82845 0.83602 0.91952 0.89519 0.92370 0.89369 0.90632 0.96196 0.96818 0.94189 0.95474 0.94271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 9.89 71.98 0.71 -2.21 16 2 C -0.08 -1.96 5.74 29.85 0.17 -1.79 16 3 C -0.11 -2.83 5.15 -19.77 -0.10 -2.93 16 4 C -0.12 -2.44 9.67 22.26 0.22 -2.22 16 5 C -0.12 -2.21 10.04 22.28 0.22 -1.99 16 6 C -0.12 -2.61 9.70 22.25 0.22 -2.39 16 7 C -0.11 -3.08 5.89 -19.77 -0.12 -3.20 16 8 C -0.11 -2.94 8.98 71.24 0.64 -2.30 16 9 C 0.07 2.08 5.55 22.51 0.12 2.20 16 10 O -0.33 -11.21 8.34 -92.38 -0.77 -11.98 16 11 C 0.10 3.85 2.61 32.07 0.08 3.93 16 12 H 0.06 2.49 7.62 -2.39 -0.02 2.48 16 13 C -0.12 -4.85 6.68 31.78 0.21 -4.64 16 14 C 0.19 9.58 5.37 86.73 0.47 10.04 16 15 N -0.62 -33.44 3.39 -691.54 -2.35 -35.79 16 16 C -0.25 -14.21 10.28 84.04 0.86 -13.35 16 17 H 0.08 4.49 7.83 -2.91 -0.02 4.47 16 18 C -0.06 -3.61 5.49 84.86 0.47 -3.14 16 19 N -0.95 -57.75 10.31 21.65 0.22 -57.52 16 20 Si 0.98 46.15 29.55 68.60 2.03 48.18 16 21 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 22 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 23 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 24 C 0.12 5.47 5.98 86.93 0.52 5.99 16 25 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 27 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.09 1.65 8.02 -2.39 -0.02 1.63 16 29 H 0.06 1.54 6.58 -2.39 -0.02 1.52 16 30 H 0.15 2.19 8.05 -2.91 -0.02 2.17 16 31 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 32 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16 33 H 0.06 1.76 7.29 -2.39 -0.02 1.74 16 34 H 0.09 1.79 8.09 -2.38 -0.02 1.77 16 35 H 0.06 1.73 7.37 -2.39 -0.02 1.71 16 36 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 37 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 38 H 0.02 1.11 7.37 -2.39 -0.02 1.10 16 39 H 0.01 0.77 7.51 -2.39 -0.02 0.76 16 40 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 41 H 0.03 1.21 7.97 -2.39 -0.02 1.19 16 42 H 0.04 1.69 7.48 -2.39 -0.02 1.67 16 Total: -1.00 -67.05 336.26 4.81 -62.24 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: 0.98 Total: 12.85 kcal Atomic # 6 Polarization: -22.68 SS G_CDS: 4.70 Total: -17.99 kcal Atomic # 7 Polarization: -91.19 SS G_CDS: -2.12 Total: -93.31 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: -0.77 Total: -11.98 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -67.05 4.81 -62.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233931056.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.406 kcal (2) G-P(sol) polarization free energy of solvation -67.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds