Wall clock time and date at job start Mon Mar 30 2020 01:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42906 * 109.57462 * 2 1 4 4 C 1.53115 * 109.52218 * 239.84377 * 2 1 3 5 5 C 1.53040 * 109.27909 * 182.43885 * 4 2 1 6 6 N 1.46850 * 109.52156 * 59.18300 * 5 4 2 7 7 C 1.46894 * 111.00149 * 174.16276 * 6 5 4 8 8 C 1.50699 * 109.47575 * 169.99677 * 7 6 5 9 9 C 1.37647 * 120.12773 * 260.02342 * 8 7 6 10 10 C 1.38610 * 120.24801 * 179.97438 * 9 8 7 11 11 C 1.38650 * 120.50165 * 359.97438 * 10 9 8 12 12 C 1.37600 * 120.25291 * 0.02562 * 11 10 9 13 13 C 1.40696 * 120.13165 * 79.99604 * 8 7 6 14 14 C 1.41397 * 120.23793 * 0.04607 * 13 8 7 15 15 H 1.07998 * 120.00657 * 329.81194 * 14 13 8 16 16 C 1.39948 * 119.99814 * 149.81448 * 14 13 8 17 17 N 1.30826 * 120.00042 * 162.03683 * 16 14 13 18 18 Si 1.86801 * 119.99981 * 342.04110 * 16 14 13 19 19 H 1.48499 * 109.47304 * 95.38772 * 18 16 14 20 20 H 1.48497 * 109.47259 * 215.39283 * 18 16 14 21 21 H 1.48505 * 109.46868 * 335.39169 * 18 16 14 22 22 C 1.46855 * 111.19212 * 298.25499 * 6 5 4 23 23 C 1.53029 * 109.52356 * 61.74562 * 22 6 5 24 24 H 1.08994 * 109.46926 * 180.15903 * 1 2 3 25 25 H 1.09008 * 109.46809 * 300.15527 * 1 2 3 26 26 H 1.08995 * 109.47288 * 60.15497 * 1 2 3 27 27 H 0.96693 * 113.99700 * 59.84105 * 3 2 1 28 28 H 1.09002 * 109.50806 * 62.49664 * 4 2 1 29 29 H 1.08999 * 109.53490 * 302.39959 * 4 2 1 30 30 H 1.08994 * 109.46356 * 299.16408 * 5 4 2 31 31 H 1.09003 * 109.45464 * 179.18733 * 5 4 2 32 32 H 1.09006 * 109.47721 * 49.99419 * 7 6 5 33 33 H 1.09003 * 109.47043 * 289.99267 * 7 6 5 34 34 H 1.07999 * 119.87191 * 359.94785 * 9 8 7 35 35 H 1.07997 * 119.74896 * 179.97438 * 10 9 8 36 36 H 1.08005 * 119.87876 * 180.27948 * 11 10 9 37 37 H 1.08001 * 120.13020 * 180.02562 * 12 11 10 38 38 H 0.97005 * 119.99617 * 180.02562 * 17 16 14 39 39 H 1.09000 * 109.46076 * 181.76253 * 22 6 5 40 40 H 1.08997 * 109.46057 * 301.72635 * 22 6 5 41 41 H 1.09001 * 109.50103 * 180.87570 * 23 22 6 42 42 H 1.09009 * 109.53634 * 60.78035 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0088 1.3465 0.0000 4 6 2.0417 -0.7250 -1.2478 5 6 3.5708 -0.7751 -1.2117 6 7 4.0103 -1.4789 -0.0001 7 6 5.4670 -1.6678 -0.0001 8 6 5.9091 -2.1654 1.3519 9 6 6.4508 -1.2910 2.2667 10 6 6.8578 -1.7459 3.5112 11 6 6.7243 -3.0838 3.8496 12 6 6.1855 -3.9758 2.9510 13 6 5.7693 -3.5253 1.6844 14 6 5.2146 -4.4328 0.7526 15 1 4.4816 -4.0912 0.0368 16 6 5.6155 -5.7736 0.7580 17 7 4.8807 -6.6784 0.1638 18 14 7.1996 -6.2714 1.6136 19 1 6.8938 -6.7345 2.9910 20 1 7.8480 -7.3706 0.8543 21 1 8.1164 -5.1048 1.6757 22 6 3.5708 -0.7751 1.2116 23 6 2.0418 -0.7250 1.2478 24 1 -0.3633 -1.0276 0.0029 25 1 -0.3633 0.5163 0.8887 26 1 -0.3633 0.5114 -0.8913 27 1 1.7224 1.8657 0.7638 28 1 1.7161 -0.1890 -2.1394 29 1 1.6447 -1.7399 -1.2682 30 1 3.9674 0.2401 -1.2060 31 1 3.9377 -1.3034 -2.0918 32 1 5.9566 -0.7180 -0.2156 33 1 5.7388 -2.3978 -0.7625 34 1 6.5595 -0.2467 2.0136 35 1 7.2821 -1.0529 4.2226 36 1 7.0406 -3.4265 4.8238 37 1 6.0821 -5.0174 3.2169 38 1 5.1584 -7.6078 0.1679 39 1 3.9378 -1.3033 2.0916 40 1 3.9675 0.2401 1.2059 41 1 1.7163 -0.1890 2.1393 42 1 1.6442 -1.7398 1.2678 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235510810.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:09 Heat of formation + Delta-G solvation = -55.355591 kcal Electronic energy + Delta-G solvation = -22186.261789 eV Core-core repulsion = 19129.387621 eV Total energy + Delta-G solvation = -3056.874167 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.82160 -39.58105 -37.14456 -35.42766 -33.84155 -32.24195 -32.02895 -31.54075 -29.12962 -27.06774 -25.59126 -24.16223 -23.12451 -22.77878 -21.14937 -20.62739 -19.15277 -17.55683 -17.23955 -16.83365 -16.39317 -16.13405 -15.73786 -15.62982 -15.34893 -15.08896 -14.86069 -14.50665 -13.95488 -13.77083 -13.69336 -13.33484 -13.26227 -12.98315 -12.82682 -12.61351 -12.52562 -12.38637 -12.27467 -12.09811 -12.01890 -11.94584 -11.50508 -11.20503 -11.09929 -10.93496 -10.63480 -9.38636 -9.31718 -8.95532 -8.79207 -6.34777 0.81104 0.90767 1.28307 1.41718 1.50235 2.15807 2.67707 3.12321 3.40297 3.67328 3.80985 3.87005 3.99138 4.20038 4.25408 4.36815 4.44502 4.51129 4.54871 4.57151 4.67370 4.72003 4.76104 4.80642 4.91166 4.96254 5.00911 5.04365 5.11841 5.17864 5.19458 5.26071 5.29985 5.39009 5.42835 5.68830 5.89827 6.00293 6.13802 6.32631 6.40436 6.42958 6.56932 6.90365 6.93444 6.97504 8.27294 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.020855 B = 0.006045 C = 0.005232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.279369 B = 4630.822553 C = 5350.572954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.134 3.866 3 O -0.570 6.570 4 C -0.099 4.099 5 C 0.061 3.939 6 N -0.540 5.540 7 C 0.129 3.871 8 C -0.182 4.182 9 C -0.079 4.079 10 C -0.231 4.231 11 C -0.087 4.087 12 C -0.257 4.257 13 C 0.088 3.912 14 C -0.457 4.457 15 H 0.077 0.923 16 C 0.048 3.952 17 N -0.850 5.850 18 Si 0.957 3.043 19 H -0.265 1.265 20 H -0.283 1.283 21 H -0.257 1.257 22 C 0.071 3.929 23 C -0.136 4.136 24 H 0.064 0.936 25 H 0.073 0.927 26 H 0.067 0.933 27 H 0.387 0.613 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.032 0.968 31 H 0.064 0.936 32 H 0.030 0.970 33 H 0.057 0.943 34 H 0.114 0.886 35 H 0.125 0.875 36 H 0.120 0.880 37 H 0.090 0.910 38 H 0.289 0.711 39 H 0.057 0.943 40 H 0.030 0.970 41 H 0.084 0.916 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.700 12.061 1.476 13.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.093 3.907 3 O -0.378 6.378 4 C -0.137 4.137 5 C -0.067 4.067 6 N -0.265 5.265 7 C 0.002 3.998 8 C -0.184 4.184 9 C -0.098 4.098 10 C -0.250 4.250 11 C -0.106 4.106 12 C -0.276 4.276 13 C 0.085 3.915 14 C -0.487 4.487 15 H 0.095 0.905 16 C -0.166 4.166 17 N -0.477 5.477 18 Si 0.782 3.218 19 H -0.191 1.191 20 H -0.210 1.210 21 H -0.181 1.181 22 C -0.056 4.056 23 C -0.174 4.174 24 H 0.083 0.917 25 H 0.092 0.908 26 H 0.086 0.914 27 H 0.236 0.764 28 H 0.100 0.900 29 H 0.092 0.908 30 H 0.051 0.949 31 H 0.083 0.917 32 H 0.048 0.952 33 H 0.075 0.925 34 H 0.132 0.868 35 H 0.143 0.857 36 H 0.138 0.862 37 H 0.108 0.892 38 H 0.099 0.901 39 H 0.075 0.925 40 H 0.048 0.952 41 H 0.103 0.897 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.748 11.149 0.776 12.143 hybrid contribution 0.671 0.002 0.660 0.941 sum -4.077 11.151 1.436 11.959 Atomic orbital electron populations 1.22384 0.94005 1.03015 1.03211 1.21142 0.93274 0.81897 0.94346 1.86509 1.77590 1.23296 1.50424 1.21570 0.94500 1.00187 0.97445 1.21977 0.96297 0.95859 0.92559 1.61930 1.12426 1.49683 1.02430 1.20529 0.86872 0.97335 0.95055 1.19773 1.08123 0.93946 0.96522 1.20824 0.97445 0.97923 0.93606 1.20789 1.10682 0.95453 0.98106 1.20951 0.97379 0.93962 0.98259 1.21164 1.11940 0.98631 0.95855 1.17691 0.89388 0.92824 0.91623 1.19564 1.21397 0.92137 1.15591 0.90533 1.26748 1.00028 0.95985 0.93822 1.69749 1.37053 1.03336 1.37532 0.85618 0.79773 0.78166 0.78222 1.19109 1.20991 1.18061 1.21844 0.95514 0.95378 0.92907 1.22252 0.95066 1.01365 0.98746 0.91721 0.90829 0.91380 0.76406 0.89953 0.90829 0.94940 0.91732 0.95198 0.92512 0.86755 0.85693 0.86216 0.89176 0.90093 0.92476 0.95229 0.89749 0.92022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.21 8.83 71.98 0.64 -2.57 16 2 C 0.13 3.27 0.99 -10.72 -0.01 3.26 16 3 O -0.57 -13.36 11.84 -148.98 -1.76 -15.12 16 4 C -0.10 -2.78 5.11 30.65 0.16 -2.62 16 5 C 0.06 2.00 5.29 86.33 0.46 2.46 16 6 N -0.54 -20.80 4.52 -900.93 -4.07 -24.88 16 7 C 0.13 5.33 4.62 85.56 0.40 5.73 16 8 C -0.18 -8.14 3.74 -19.40 -0.07 -8.21 16 9 C -0.08 -3.13 8.62 22.22 0.19 -2.93 16 10 C -0.23 -8.80 10.05 22.46 0.23 -8.57 16 11 C -0.09 -3.59 10.02 22.22 0.22 -3.37 16 12 C -0.26 -12.28 7.17 22.73 0.16 -12.12 16 13 C 0.09 4.43 5.10 -21.29 -0.11 4.33 16 14 C -0.46 -25.33 8.60 23.46 0.20 -25.12 16 15 H 0.08 4.59 7.17 -2.91 -0.02 4.57 16 16 C 0.05 2.60 5.41 85.26 0.46 3.06 16 17 N -0.85 -47.18 13.93 21.83 0.30 -46.88 16 18 Si 0.96 43.97 24.52 68.60 1.68 45.65 16 19 H -0.27 -11.70 6.71 99.48 0.67 -11.03 16 20 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 21 H -0.26 -12.09 6.86 99.48 0.68 -11.40 16 22 C 0.07 2.49 4.67 86.32 0.40 2.89 16 23 C -0.14 -3.87 5.08 30.64 0.16 -3.71 16 24 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.07 1.13 8.14 -2.38 -0.02 1.12 16 26 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.39 5.99 9.05 -74.06 -0.67 5.32 16 28 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.03 1.06 7.76 -2.39 -0.02 1.05 16 31 H 0.06 2.13 8.12 -2.39 -0.02 2.11 16 32 H 0.03 1.13 7.94 -2.38 -0.02 1.11 16 33 H 0.06 2.58 7.41 -2.39 -0.02 2.56 16 34 H 0.11 3.91 8.03 -2.91 -0.02 3.89 16 35 H 0.13 3.92 8.06 -2.91 -0.02 3.89 16 36 H 0.12 4.17 8.06 -2.91 -0.02 4.15 16 37 H 0.09 4.39 4.77 -2.91 -0.01 4.38 16 38 H 0.29 14.56 8.30 -92.70 -0.77 13.79 16 39 H 0.06 2.31 6.03 -2.39 -0.01 2.29 16 40 H 0.03 1.00 7.76 -2.39 -0.02 0.98 16 41 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 Total: -1.00 -60.94 324.23 -0.11 -61.05 By element: Atomic # 1 Polarization: 27.42 SS G_CDS: 0.27 Total: 27.68 kcal Atomic # 6 Polarization: -50.98 SS G_CDS: 3.48 Total: -47.51 kcal Atomic # 7 Polarization: -67.99 SS G_CDS: -3.77 Total: -71.76 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: -1.76 Total: -15.12 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 1.68 Total: 45.65 kcal Total: -60.94 -0.11 -61.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235510810.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.694 kcal (2) G-P(sol) polarization free energy of solvation -60.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds