Wall clock time and date at job start Mon Mar 30 2020 01:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 C 1.53000 * 110.35489 * 2 1 4 4 O 1.42895 * 109.47376 * 302.14576 * 3 2 1 5 5 C 1.54597 * 110.31046 * 237.86045 * 2 1 3 6 6 C 1.54939 * 102.92269 * 263.04021 * 5 2 1 7 7 N 1.48539 * 103.22399 * 322.58558 * 6 5 2 8 8 C 1.46908 * 110.99873 * 159.71765 * 7 6 5 9 9 C 1.50700 * 109.46679 * 52.60322 * 8 7 6 10 10 C 1.37639 * 120.12752 * 259.97448 * 9 8 7 11 11 C 1.38615 * 120.25001 * 180.02562 * 10 9 8 12 12 C 1.38662 * 120.50038 * 0.02562 * 11 10 9 13 13 C 1.37607 * 120.24498 * 359.66746 * 12 11 10 14 14 C 1.40697 * 120.12758 * 80.00499 * 9 8 7 15 15 C 1.41396 * 120.24491 * 359.97438 * 14 9 8 16 16 H 1.07999 * 120.00020 * 334.13395 * 15 14 9 17 17 C 1.39945 * 120.00047 * 154.13386 * 15 14 9 18 18 N 1.30819 * 120.00284 * 334.79550 * 17 15 14 19 19 Si 1.86805 * 119.99915 * 154.79024 * 17 15 14 20 20 H 1.48501 * 109.47028 * 179.97438 * 19 17 15 21 21 H 1.48492 * 109.47210 * 300.00371 * 19 17 15 22 22 H 1.48500 * 109.46693 * 60.00308 * 19 17 15 23 23 C 1.47897 * 105.82357 * 39.20807 * 7 6 5 24 24 H 1.08997 * 109.47657 * 297.85514 * 1 2 3 25 25 H 1.08998 * 109.47103 * 57.85868 * 1 2 3 26 26 H 1.09003 * 109.47383 * 177.85515 * 1 2 3 27 27 H 1.09010 * 109.46907 * 62.14223 * 3 2 1 28 28 H 1.08999 * 109.47731 * 182.13760 * 3 2 1 29 29 H 0.96698 * 114.00424 * 180.02562 * 4 3 2 30 30 H 1.08991 * 110.72542 * 21.40088 * 5 2 1 31 31 H 1.09000 * 110.72415 * 144.68565 * 5 2 1 32 32 H 1.08998 * 110.67000 * 204.15119 * 6 5 2 33 33 H 1.09003 * 110.66872 * 81.01759 * 6 5 2 34 34 H 1.08999 * 109.47356 * 292.60860 * 8 7 6 35 35 H 1.08991 * 109.47126 * 172.60048 * 8 7 6 36 36 H 1.07999 * 119.87797 * 0.02683 * 10 9 8 37 37 H 1.07997 * 119.75480 * 179.97438 * 11 10 9 38 38 H 1.07995 * 119.87859 * 179.97438 * 12 11 10 39 39 H 1.08001 * 120.12608 * 180.30073 * 13 12 11 40 40 H 0.97004 * 119.99724 * 354.29829 * 18 17 15 41 41 H 1.08995 * 109.91980 * 94.01492 * 23 7 6 42 42 H 1.08997 * 109.91831 * 215.31454 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0621 1.4345 0.0000 4 8 1.5557 2.1304 -1.1407 5 6 2.0665 -0.7713 -1.2277 6 6 2.3584 -2.1797 -0.6516 7 7 2.8809 -1.8890 0.7082 8 6 2.7668 -3.0668 1.5788 9 6 3.4044 -4.2538 0.9041 10 6 2.6219 -5.1851 0.2600 11 6 3.2057 -6.2782 -0.3610 12 6 4.5819 -6.4472 -0.3408 13 6 5.3841 -5.5254 0.2918 14 6 4.8019 -4.4148 0.9307 15 6 5.6159 -3.4646 1.5894 16 1 5.2727 -2.4471 1.7048 17 6 6.8661 -3.8426 2.0918 18 7 7.0934 -5.0913 2.4088 19 14 8.2106 -2.5641 2.3097 20 1 9.4292 -3.2151 2.8541 21 1 8.5236 -1.9462 0.9962 22 1 7.7474 -1.5146 3.2526 23 6 2.0644 -0.7684 1.2229 24 1 -0.3634 0.4801 0.9085 25 1 -0.3633 0.5467 -0.8701 26 1 -0.3634 -1.0270 -0.0385 27 1 1.7382 1.9421 0.9087 28 1 3.1513 1.4180 -0.0383 29 1 1.8532 3.0482 -1.2056 30 1 1.3103 -0.8240 -2.0108 31 1 2.9805 -0.3111 -1.6030 32 1 3.1105 -2.6924 -1.2512 33 1 1.4433 -2.7691 -0.5942 34 1 1.7144 -3.2783 1.7678 35 1 3.2734 -2.8705 2.5237 36 1 1.5490 -5.0637 0.2383 37 1 2.5841 -7.0043 -0.8637 38 1 5.0260 -7.3028 -0.8275 39 1 6.4561 -5.6563 0.3022 40 1 6.3724 -5.7393 2.3744 41 1 1.2323 -1.1548 1.8113 42 1 2.6812 -0.1100 1.8346 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235511032.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:15 Heat of formation + Delta-G solvation = -40.937409 kcal Electronic energy + Delta-G solvation = -21868.318482 eV Core-core repulsion = 18812.069535 eV Total energy + Delta-G solvation = -3056.248948 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.50685 -37.80742 -36.35786 -33.82400 -33.32050 -30.24756 -29.20845 -29.14807 -26.78490 -25.67395 -24.70963 -23.52437 -21.14179 -20.79499 -19.63670 -18.82430 -17.60584 -17.31220 -15.62948 -15.26098 -14.81900 -14.58839 -14.40564 -14.24025 -13.92559 -13.70340 -12.96927 -12.70888 -12.63705 -12.24344 -12.13051 -12.02111 -11.83344 -11.44850 -11.30632 -11.11457 -11.01510 -10.71335 -10.61618 -10.45106 -10.36872 -10.31431 -10.29337 -9.91235 -9.55064 -9.27413 -8.89248 -7.80414 -7.53923 -7.46693 -7.06099 -4.33658 2.78981 2.86714 3.20504 3.33290 3.41579 4.07821 4.14971 4.53878 4.69561 4.77193 4.84882 5.13680 5.41960 5.44394 5.56045 5.60349 5.63579 5.68247 5.76976 5.91283 5.99253 6.02460 6.09982 6.12648 6.21257 6.24355 6.36013 6.41751 6.44879 6.51797 6.59830 6.81064 7.00984 7.24082 7.46336 7.48678 7.57206 7.67387 7.76461 7.90810 7.95752 8.04136 8.28157 8.40081 8.89035 8.99892 10.12898 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.016125 B = 0.006122 C = 0.004814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.975113 B = 4572.435854 C = 5815.451726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.071 4.071 3 C 0.092 3.908 4 O -0.571 6.571 5 C -0.106 4.106 6 C 0.047 3.953 7 N -0.499 5.499 8 C 0.119 3.881 9 C -0.202 4.202 10 C -0.073 4.073 11 C -0.260 4.260 12 C -0.085 4.085 13 C -0.221 4.221 14 C 0.116 3.884 15 C -0.505 4.505 16 H 0.090 0.910 17 C 0.037 3.963 18 N -0.801 5.801 19 Si 1.063 2.937 20 H -0.277 1.277 21 H -0.275 1.275 22 H -0.277 1.277 23 C 0.044 3.956 24 H 0.050 0.950 25 H 0.062 0.938 26 H 0.051 0.949 27 H 0.041 0.959 28 H 0.052 0.948 29 H 0.374 0.626 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.036 0.964 34 H 0.015 0.985 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.103 0.897 40 H 0.298 0.702 41 H 0.043 0.957 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.814 10.467 -2.473 13.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.072 4.072 3 C 0.014 3.986 4 O -0.376 6.376 5 C -0.144 4.144 6 C -0.081 4.081 7 N -0.223 5.223 8 C -0.008 4.008 9 C -0.204 4.204 10 C -0.092 4.092 11 C -0.280 4.280 12 C -0.104 4.104 13 C -0.240 4.240 14 C 0.112 3.888 15 C -0.533 4.533 16 H 0.108 0.892 17 C -0.185 4.185 18 N -0.424 5.424 19 Si 0.887 3.113 20 H -0.202 1.202 21 H -0.201 1.201 22 H -0.202 1.202 23 C -0.085 4.085 24 H 0.069 0.931 25 H 0.081 0.919 26 H 0.070 0.930 27 H 0.060 0.940 28 H 0.070 0.930 29 H 0.221 0.779 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.054 0.946 34 H 0.033 0.967 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.121 0.879 40 H 0.112 0.888 41 H 0.061 0.939 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.945 10.158 -2.089 11.954 hybrid contribution -2.222 -0.107 -0.277 2.241 sum -8.167 10.051 -2.367 13.165 Atomic orbital electron populations 1.21785 0.93971 1.01364 1.01763 1.21422 0.95836 0.93491 0.96436 1.22252 0.97253 0.91825 0.87284 1.86471 1.75282 1.28569 1.47296 1.22522 1.00687 0.95200 0.95984 1.23094 0.98306 0.95506 0.91186 1.64912 1.49318 1.05947 1.02122 1.20787 0.95873 0.88119 0.95985 1.19394 0.93574 0.98189 1.09207 1.20406 0.96578 0.94842 0.97328 1.20228 0.94451 1.01405 1.11887 1.20598 0.93787 0.97482 0.98494 1.21176 0.98397 0.98990 1.05434 1.17421 0.90698 0.91091 0.89561 1.20700 1.01515 0.98975 1.32112 0.89221 1.26999 1.00156 0.99296 0.92020 1.70452 1.38335 1.04025 1.29597 0.83675 0.75184 0.74685 0.77786 1.20179 1.20063 1.20217 1.22923 0.95764 0.94314 0.95476 0.93099 0.91858 0.92962 0.94035 0.92986 0.77940 0.91546 0.90972 0.89940 0.94599 0.96657 0.90580 0.89979 0.89688 0.89573 0.87905 0.88839 0.93911 0.90801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.62 8.07 37.15 0.30 -1.32 16 2 C -0.07 -0.96 0.77 -153.15 -0.12 -1.08 16 3 C 0.09 1.08 5.61 37.16 0.21 1.29 16 4 O -0.57 -6.37 12.71 -35.23 -0.45 -6.82 16 5 C -0.11 -1.59 5.95 -24.87 -0.15 -1.74 16 6 C 0.05 0.83 5.22 -1.89 -0.01 0.82 16 7 N -0.50 -9.39 5.12 -231.88 -1.19 -10.58 16 8 C 0.12 2.45 4.36 -4.97 -0.02 2.43 16 9 C -0.20 -4.73 4.37 -103.91 -0.45 -5.18 16 10 C -0.07 -1.62 8.95 -39.66 -0.35 -1.97 16 11 C -0.26 -5.86 10.05 -39.29 -0.39 -6.25 16 12 C -0.08 -2.00 10.02 -39.66 -0.40 -2.40 16 13 C -0.22 -5.67 7.95 -38.87 -0.31 -5.98 16 14 C 0.12 2.99 5.28 -106.82 -0.56 2.43 16 15 C -0.51 -13.10 8.11 -37.74 -0.31 -13.41 16 16 H 0.09 2.31 6.91 -52.49 -0.36 1.95 16 17 C 0.04 0.93 4.94 -17.34 -0.09 0.84 16 18 N -0.80 -21.27 12.34 55.55 0.69 -20.59 16 19 Si 1.06 21.88 30.00 -169.99 -5.10 16.78 16 20 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 21 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 22 H -0.28 -5.41 7.11 56.52 0.40 -5.00 16 23 C 0.04 0.67 6.03 -2.75 -0.02 0.65 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.78 7.62 -51.93 -0.40 0.38 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.04 0.43 8.14 -51.92 -0.42 0.01 16 28 H 0.05 0.64 8.11 -51.93 -0.42 0.21 16 29 H 0.37 2.45 9.12 45.56 0.42 2.87 16 30 H 0.07 0.94 7.85 -51.93 -0.41 0.53 16 31 H 0.07 1.13 7.84 -51.93 -0.41 0.72 16 32 H 0.08 1.67 7.90 -51.93 -0.41 1.26 16 33 H 0.04 0.63 7.82 -51.93 -0.41 0.23 16 34 H 0.02 0.30 7.67 -51.93 -0.40 -0.10 16 35 H 0.08 1.66 7.34 -51.93 -0.38 1.28 16 36 H 0.08 1.65 8.03 -52.49 -0.42 1.23 16 37 H 0.08 1.72 8.06 -52.49 -0.42 1.29 16 38 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 39 H 0.10 2.74 6.54 -52.49 -0.34 2.40 16 40 H 0.30 8.15 6.70 -40.82 -0.27 7.88 16 41 H 0.04 0.63 7.11 -51.93 -0.37 0.27 16 42 H 0.07 1.09 7.68 -51.93 -0.40 0.69 16 LS Contribution 331.96 15.07 5.00 5.00 Total: -1.00 -28.01 331.96 -9.61 -37.63 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -5.89 Total: 9.45 kcal Atomic # 6 Polarization: -28.20 SS G_CDS: -2.67 Total: -30.88 kcal Atomic # 7 Polarization: -30.66 SS G_CDS: -0.50 Total: -31.16 kcal Atomic # 8 Polarization: -6.37 SS G_CDS: -0.45 Total: -6.82 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.10 Total: 16.78 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -28.01 -9.61 -37.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235511032.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.312 kcal (2) G-P(sol) polarization free energy of solvation -28.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds