Wall clock time and date at job start Mon Mar 30 2020 01:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 C 1.53000 * 110.35489 * 2 1 4 4 O 1.42895 * 109.47376 * 302.14576 * 3 2 1 5 5 C 1.54597 * 110.31046 * 237.86045 * 2 1 3 6 6 C 1.54939 * 102.92269 * 263.04021 * 5 2 1 7 7 N 1.48539 * 103.22399 * 322.58558 * 6 5 2 8 8 C 1.46908 * 110.99873 * 159.71765 * 7 6 5 9 9 C 1.50700 * 109.46679 * 52.60322 * 8 7 6 10 10 C 1.37639 * 120.12752 * 259.97448 * 9 8 7 11 11 C 1.38615 * 120.25001 * 180.02562 * 10 9 8 12 12 C 1.38662 * 120.50038 * 0.02562 * 11 10 9 13 13 C 1.37607 * 120.24498 * 359.66746 * 12 11 10 14 14 C 1.40697 * 120.12758 * 80.00499 * 9 8 7 15 15 C 1.41396 * 120.24491 * 359.97438 * 14 9 8 16 16 H 1.07999 * 120.00020 * 334.13395 * 15 14 9 17 17 C 1.39945 * 120.00047 * 154.13386 * 15 14 9 18 18 N 1.30819 * 120.00284 * 334.79550 * 17 15 14 19 19 Si 1.86805 * 119.99915 * 154.79024 * 17 15 14 20 20 H 1.48501 * 109.47028 * 179.97438 * 19 17 15 21 21 H 1.48492 * 109.47210 * 300.00371 * 19 17 15 22 22 H 1.48500 * 109.46693 * 60.00308 * 19 17 15 23 23 C 1.47897 * 105.82357 * 39.20807 * 7 6 5 24 24 H 1.08997 * 109.47657 * 297.85514 * 1 2 3 25 25 H 1.08998 * 109.47103 * 57.85868 * 1 2 3 26 26 H 1.09003 * 109.47383 * 177.85515 * 1 2 3 27 27 H 1.09010 * 109.46907 * 62.14223 * 3 2 1 28 28 H 1.08999 * 109.47731 * 182.13760 * 3 2 1 29 29 H 0.96698 * 114.00424 * 180.02562 * 4 3 2 30 30 H 1.08991 * 110.72542 * 21.40088 * 5 2 1 31 31 H 1.09000 * 110.72415 * 144.68565 * 5 2 1 32 32 H 1.08998 * 110.67000 * 204.15119 * 6 5 2 33 33 H 1.09003 * 110.66872 * 81.01759 * 6 5 2 34 34 H 1.08999 * 109.47356 * 292.60860 * 8 7 6 35 35 H 1.08991 * 109.47126 * 172.60048 * 8 7 6 36 36 H 1.07999 * 119.87797 * 0.02683 * 10 9 8 37 37 H 1.07997 * 119.75480 * 179.97438 * 11 10 9 38 38 H 1.07995 * 119.87859 * 179.97438 * 12 11 10 39 39 H 1.08001 * 120.12608 * 180.30073 * 13 12 11 40 40 H 0.97004 * 119.99724 * 354.29829 * 18 17 15 41 41 H 1.08995 * 109.91980 * 94.01492 * 23 7 6 42 42 H 1.08997 * 109.91831 * 215.31454 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0621 1.4345 0.0000 4 8 1.5557 2.1304 -1.1407 5 6 2.0665 -0.7713 -1.2277 6 6 2.3584 -2.1797 -0.6516 7 7 2.8809 -1.8890 0.7082 8 6 2.7668 -3.0668 1.5788 9 6 3.4044 -4.2538 0.9041 10 6 2.6219 -5.1851 0.2600 11 6 3.2057 -6.2782 -0.3610 12 6 4.5819 -6.4472 -0.3408 13 6 5.3841 -5.5254 0.2918 14 6 4.8019 -4.4148 0.9307 15 6 5.6159 -3.4646 1.5894 16 1 5.2727 -2.4471 1.7048 17 6 6.8661 -3.8426 2.0918 18 7 7.0934 -5.0913 2.4088 19 14 8.2106 -2.5641 2.3097 20 1 9.4292 -3.2151 2.8541 21 1 8.5236 -1.9462 0.9962 22 1 7.7474 -1.5146 3.2526 23 6 2.0644 -0.7684 1.2229 24 1 -0.3634 0.4801 0.9085 25 1 -0.3633 0.5467 -0.8701 26 1 -0.3634 -1.0270 -0.0385 27 1 1.7382 1.9421 0.9087 28 1 3.1513 1.4180 -0.0383 29 1 1.8532 3.0482 -1.2056 30 1 1.3103 -0.8240 -2.0108 31 1 2.9805 -0.3111 -1.6030 32 1 3.1105 -2.6924 -1.2512 33 1 1.4433 -2.7691 -0.5942 34 1 1.7144 -3.2783 1.7678 35 1 3.2734 -2.8705 2.5237 36 1 1.5490 -5.0637 0.2383 37 1 2.5841 -7.0043 -0.8637 38 1 5.0260 -7.3028 -0.8275 39 1 6.4561 -5.6563 0.3022 40 1 6.3724 -5.7393 2.3744 41 1 1.2323 -1.1548 1.8113 42 1 2.6812 -0.1100 1.8346 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235511032.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:14 Heat of formation + Delta-G solvation = -58.571136 kcal Electronic energy + Delta-G solvation = -21869.083138 eV Core-core repulsion = 18812.069535 eV Total energy + Delta-G solvation = -3057.013604 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.83074 -39.49172 -37.41907 -35.70226 -34.67426 -31.81849 -31.06085 -30.56005 -27.88070 -27.21793 -26.37987 -24.86120 -22.86824 -22.47505 -21.31984 -19.99741 -19.46301 -18.17980 -16.93108 -16.81667 -16.42072 -16.14130 -15.87294 -15.62093 -15.45737 -15.14395 -14.33561 -14.20278 -13.97561 -13.76794 -13.73370 -13.40002 -13.14757 -12.91518 -12.78266 -12.73540 -12.62258 -12.25505 -12.11259 -11.95030 -11.83602 -11.59667 -11.38736 -11.35977 -11.10396 -10.80143 -10.78444 -9.46774 -9.41159 -9.21487 -8.98073 -6.31949 0.92465 0.99700 1.51543 1.66624 1.80356 2.36219 2.73341 3.17939 3.26263 3.65494 3.70355 3.75009 4.13558 4.23391 4.25803 4.32126 4.36765 4.42058 4.50139 4.54079 4.60989 4.65083 4.72368 4.77107 4.86327 4.89479 5.01015 5.02482 5.07352 5.16367 5.20882 5.26082 5.35889 5.41138 5.56854 5.80995 5.90139 6.02479 6.06827 6.16794 6.23263 6.37883 6.49673 6.95254 6.95721 7.07395 8.13078 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.016125 B = 0.006122 C = 0.004814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.975113 B = 4572.435854 C = 5815.451726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.068 4.068 3 C 0.096 3.904 4 O -0.584 6.584 5 C -0.098 4.098 6 C 0.052 3.948 7 N -0.518 5.518 8 C 0.128 3.872 9 C -0.203 4.203 10 C -0.078 4.078 11 C -0.254 4.254 12 C -0.093 4.093 13 C -0.245 4.245 14 C 0.089 3.911 15 C -0.529 4.529 16 H 0.084 0.916 17 C 0.001 3.999 18 N -0.824 5.824 19 Si 1.110 2.890 20 H -0.275 1.275 21 H -0.269 1.269 22 H -0.257 1.257 23 C 0.044 3.956 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.047 0.953 27 H 0.061 0.939 28 H 0.043 0.957 29 H 0.395 0.605 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.049 0.951 33 H 0.039 0.961 34 H 0.031 0.969 35 H 0.058 0.942 36 H 0.110 0.890 37 H 0.115 0.885 38 H 0.107 0.893 39 H 0.082 0.918 40 H 0.281 0.719 41 H 0.051 0.949 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.529 12.038 -2.784 15.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.069 4.069 3 C 0.019 3.981 4 O -0.392 6.392 5 C -0.136 4.136 6 C -0.076 4.076 7 N -0.242 5.242 8 C 0.001 3.999 9 C -0.204 4.204 10 C -0.097 4.097 11 C -0.273 4.273 12 C -0.112 4.112 13 C -0.265 4.265 14 C 0.086 3.914 15 C -0.557 4.557 16 H 0.103 0.897 17 C -0.215 4.215 18 N -0.448 5.448 19 Si 0.929 3.071 20 H -0.200 1.200 21 H -0.194 1.194 22 H -0.181 1.181 23 C -0.084 4.084 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.066 0.934 27 H 0.079 0.921 28 H 0.062 0.938 29 H 0.245 0.755 30 H 0.096 0.904 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.057 0.943 34 H 0.049 0.951 35 H 0.076 0.924 36 H 0.128 0.872 37 H 0.133 0.867 38 H 0.125 0.875 39 H 0.100 0.900 40 H 0.094 0.906 41 H 0.069 0.931 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.680 11.746 -2.409 14.239 hybrid contribution -1.836 -0.647 -0.275 1.966 sum -9.516 11.099 -2.683 14.864 Atomic orbital electron populations 1.21730 0.92619 1.01307 1.02599 1.21402 0.96812 0.94284 0.94388 1.22118 0.96666 0.90977 0.88384 1.86411 1.75418 1.30304 1.47017 1.22450 1.00706 0.93548 0.96931 1.22971 0.97136 0.97009 0.90501 1.64785 1.51074 1.06015 1.02363 1.20624 0.96078 0.88026 0.95218 1.19772 0.92962 0.99247 1.08444 1.20734 0.97981 0.94333 0.96652 1.20643 0.94255 1.01678 1.10700 1.20874 0.94454 0.97669 0.98170 1.21154 0.97759 1.00399 1.07174 1.17755 0.92110 0.91443 0.90060 1.20769 1.02633 0.98817 1.33501 0.89748 1.28286 1.02143 1.00200 0.90831 1.70566 1.37594 1.04601 1.32069 0.83082 0.72735 0.72922 0.78383 1.20028 1.19373 1.18132 1.22980 0.95703 0.93290 0.96412 0.91652 0.91677 0.93408 0.92093 0.93831 0.75546 0.90435 0.91900 0.93202 0.94304 0.95078 0.92371 0.87226 0.86662 0.87487 0.90013 0.90647 0.93073 0.90300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.69 8.07 71.98 0.58 -2.11 16 2 C -0.07 -1.69 0.77 -51.30 -0.04 -1.73 16 3 C 0.10 2.01 5.61 71.98 0.40 2.41 16 4 O -0.58 -11.32 12.71 -148.98 -1.89 -13.22 16 5 C -0.10 -2.82 5.95 31.80 0.19 -2.63 16 6 C 0.05 1.81 5.22 86.65 0.45 2.26 16 7 N -0.52 -19.20 5.12 -887.55 -4.55 -23.74 16 8 C 0.13 5.21 4.36 85.56 0.37 5.59 16 9 C -0.20 -9.51 4.37 -19.40 -0.08 -9.60 16 10 C -0.08 -3.38 8.95 22.22 0.20 -3.18 16 11 C -0.25 -10.98 10.05 22.46 0.23 -10.76 16 12 C -0.09 -4.37 10.02 22.22 0.22 -4.15 16 13 C -0.25 -13.04 7.95 22.73 0.18 -12.85 16 14 C 0.09 4.76 5.28 -21.29 -0.11 4.65 16 15 C -0.53 -28.34 8.11 23.46 0.19 -28.15 16 16 H 0.08 4.48 6.91 -2.91 -0.02 4.46 16 17 C 0.00 0.05 4.94 85.26 0.42 0.47 16 18 N -0.82 -45.54 12.34 21.83 0.27 -45.27 16 19 Si 1.11 44.70 30.00 68.60 2.06 46.75 16 20 H -0.28 -10.93 7.11 99.48 0.71 -10.22 16 21 H -0.27 -10.43 7.11 99.48 0.71 -9.73 16 22 H -0.26 -9.45 7.11 99.48 0.71 -8.74 16 23 C 0.04 1.26 6.03 86.45 0.52 1.79 16 24 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.06 1.39 7.62 -2.39 -0.02 1.38 16 26 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 28 H 0.04 0.98 8.11 -2.39 -0.02 0.96 16 29 H 0.40 4.00 9.12 -74.06 -0.68 3.32 16 30 H 0.08 2.05 7.85 -2.39 -0.02 2.03 16 31 H 0.06 1.91 7.84 -2.39 -0.02 1.89 16 32 H 0.05 2.04 7.90 -2.39 -0.02 2.02 16 33 H 0.04 1.32 7.82 -2.39 -0.02 1.30 16 34 H 0.03 1.15 7.67 -2.39 -0.02 1.14 16 35 H 0.06 2.57 7.34 -2.39 -0.02 2.55 16 36 H 0.11 4.10 8.03 -2.91 -0.02 4.08 16 37 H 0.12 4.28 8.06 -2.91 -0.02 4.25 16 38 H 0.11 4.46 8.06 -2.91 -0.02 4.44 16 39 H 0.08 4.60 6.54 -2.91 -0.02 4.58 16 40 H 0.28 16.21 6.70 -92.71 -0.62 15.59 16 41 H 0.05 1.39 7.11 -2.39 -0.02 1.38 16 42 H 0.08 2.18 7.68 -2.39 -0.02 2.17 16 Total: -1.00 -61.45 331.96 0.08 -61.36 By element: Atomic # 1 Polarization: 31.65 SS G_CDS: 0.47 Total: 32.12 kcal Atomic # 6 Polarization: -61.73 SS G_CDS: 3.72 Total: -58.00 kcal Atomic # 7 Polarization: -64.74 SS G_CDS: -4.28 Total: -69.02 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: -1.89 Total: -13.22 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.06 Total: 46.75 kcal Total: -61.45 0.08 -61.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235511032.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.792 kcal (2) G-P(sol) polarization free energy of solvation -61.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds