Wall clock time and date at job start Mon Mar 30 2020 01:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 110.35315 * 2 1 4 4 O 1.42900 * 109.47287 * 57.85597 * 3 2 1 5 5 C 1.54596 * 110.30632 * 122.14359 * 2 1 3 6 6 C 1.54935 * 102.92305 * 96.95685 * 5 2 1 7 7 N 1.49004 * 103.25760 * 37.45948 * 6 5 2 8 8 C 1.46901 * 111.16882 * 200.30769 * 7 6 5 9 9 C 1.50705 * 109.47087 * 279.21120 * 8 7 6 10 10 C 1.37629 * 120.12913 * 264.59877 * 9 8 7 11 11 C 1.38612 * 120.24925 * 180.02562 * 10 9 8 12 12 C 1.38650 * 120.50368 * 359.97438 * 11 10 9 13 13 C 1.37602 * 120.24467 * 0.02619 * 12 11 10 14 14 C 1.40702 * 120.12379 * 84.32372 * 9 8 7 15 15 C 1.41392 * 120.24737 * 0.02562 * 14 9 8 16 16 H 1.07994 * 120.00299 * 25.98147 * 15 14 9 17 17 C 1.39944 * 119.99967 * 205.99227 * 15 14 9 18 18 N 1.30824 * 120.00116 * 14.31436 * 17 15 14 19 19 Si 1.86800 * 120.00359 * 194.31780 * 17 15 14 20 20 H 1.48506 * 109.46632 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47230 * 119.99745 * 19 17 15 22 22 H 1.48495 * 109.47198 * 240.00141 * 19 17 15 23 23 C 1.47905 * 105.57704 * 320.76294 * 7 6 5 24 24 H 1.09006 * 109.46964 * 182.14107 * 1 2 3 25 25 H 1.08997 * 109.47231 * 302.14109 * 1 2 3 26 26 H 1.08999 * 109.46861 * 62.14296 * 1 2 3 27 27 H 1.09003 * 109.47056 * 177.85714 * 3 2 1 28 28 H 1.08999 * 109.47585 * 297.85679 * 3 2 1 29 29 H 0.96702 * 114.00061 * 179.97438 * 4 3 2 30 30 H 1.09004 * 110.72362 * 215.31565 * 5 2 1 31 31 H 1.09000 * 110.72565 * 338.59489 * 5 2 1 32 32 H 1.09004 * 110.66427 * 155.84683 * 6 5 2 33 33 H 1.08996 * 110.66688 * 278.97492 * 6 5 2 34 34 H 1.08997 * 109.47066 * 39.20940 * 8 7 6 35 35 H 1.09001 * 109.47440 * 159.20943 * 8 7 6 36 36 H 1.08005 * 119.87871 * 0.02562 * 10 9 8 37 37 H 1.08004 * 119.75035 * 179.97438 * 11 10 9 38 38 H 1.07997 * 119.88284 * 179.97438 * 12 11 10 39 39 H 1.08005 * 120.12594 * 179.97438 * 13 12 11 40 40 H 0.96998 * 120.00504 * 180.02562 * 18 17 15 41 41 H 1.09002 * 109.91435 * 265.92423 * 23 7 6 42 42 H 1.09001 * 109.91833 * 144.83119 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0622 1.4344 0.0000 4 8 1.5558 2.1304 1.1407 5 6 2.0666 -0.7714 1.2276 6 6 2.3583 -2.1797 0.6515 7 7 2.8837 -1.8890 -0.7122 8 6 2.7708 -3.0644 -1.5859 9 6 3.9155 -4.0057 -1.3121 10 6 5.0507 -3.9572 -2.0888 11 6 6.1048 -4.8221 -1.8395 12 6 6.0293 -5.7443 -0.8069 13 6 4.9041 -5.8106 -0.0176 14 6 3.8300 -4.9335 -0.2578 15 6 2.6709 -4.9889 0.5500 16 1 1.7207 -4.6624 0.1541 17 6 2.7551 -5.4667 1.8627 18 7 3.9229 -5.5969 2.4378 19 14 1.2000 -5.9186 2.7937 20 1 0.0176 -5.6814 1.9270 21 1 1.2525 -7.3518 3.1789 22 1 1.0935 -5.0812 4.0154 23 6 2.0645 -0.7684 -1.2228 24 1 -0.3633 -1.0270 0.0384 25 1 -0.3633 0.5467 0.8701 26 1 -0.3633 0.4802 -0.9086 27 1 3.1514 1.4179 0.0384 28 1 1.7384 1.9422 -0.9085 29 1 1.8533 3.0482 1.2056 30 1 2.9806 -0.3112 1.6031 31 1 1.3103 -0.8241 2.0108 32 1 3.1104 -2.6924 1.2513 33 1 1.4433 -2.7691 0.5942 34 1 1.8271 -3.5734 -1.3901 35 1 2.8029 -2.7469 -2.6282 36 1 5.1205 -3.2426 -2.8956 37 1 6.9916 -4.7774 -2.4542 38 1 6.8563 -6.4137 -0.6218 39 1 4.8472 -6.5300 0.7859 40 1 3.9813 -5.9283 3.3475 41 1 1.2324 -1.1548 -1.8114 42 1 2.6784 -0.1090 -1.8364 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235511033.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:18 Heat of formation + Delta-G solvation = -50.382353 kcal Electronic energy + Delta-G solvation = -22092.669503 eV Core-core repulsion = 19036.010991 eV Total energy + Delta-G solvation = -3056.658511 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.69635 -39.28914 -37.34626 -35.48842 -34.58376 -31.75504 -31.34957 -30.37525 -27.82185 -27.36826 -26.43695 -24.61817 -22.83454 -22.34978 -21.05211 -19.92255 -18.92963 -18.17464 -17.35255 -16.68148 -16.47608 -16.02313 -15.70428 -15.43102 -15.37651 -15.01980 -14.37243 -14.31564 -13.80901 -13.70553 -13.39948 -13.31722 -13.06172 -13.00469 -12.92691 -12.75670 -12.50842 -12.20845 -12.15120 -11.98311 -11.76311 -11.53020 -11.33565 -11.22824 -11.10146 -10.96742 -10.75482 -9.23113 -9.17052 -9.03664 -8.54038 -6.21064 1.01423 1.17949 1.36253 1.47343 1.51596 2.20171 2.82694 3.27392 3.31722 3.73371 3.78695 3.90721 4.18823 4.29890 4.42408 4.46523 4.47638 4.52021 4.60089 4.63843 4.71707 4.75041 4.79121 4.82950 4.92058 4.98558 5.04463 5.11153 5.22668 5.24087 5.30822 5.41599 5.43018 5.47369 5.58604 5.81947 6.09346 6.10601 6.23967 6.26209 6.37655 6.49067 6.78848 6.98789 7.04601 7.14585 8.41963 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.014909 B = 0.007042 C = 0.005307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.622500 B = 3975.148088 C = 5274.929447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.069 4.069 3 C 0.098 3.902 4 O -0.586 6.586 5 C -0.106 4.106 6 C 0.062 3.938 7 N -0.518 5.518 8 C 0.122 3.878 9 C -0.191 4.191 10 C -0.085 4.085 11 C -0.242 4.242 12 C -0.117 4.117 13 C -0.192 4.192 14 C 0.092 3.908 15 C -0.466 4.466 16 H 0.073 0.927 17 C 0.041 3.959 18 N -0.828 5.828 19 Si 0.957 3.043 20 H -0.258 1.258 21 H -0.268 1.268 22 H -0.269 1.269 23 C 0.044 3.956 24 H 0.042 0.958 25 H 0.061 0.939 26 H 0.069 0.931 27 H 0.045 0.955 28 H 0.065 0.935 29 H 0.395 0.605 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.033 0.967 34 H 0.025 0.975 35 H 0.075 0.925 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.102 0.898 39 H 0.099 0.901 40 H 0.282 0.718 41 H 0.050 0.950 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.598 11.469 -3.783 13.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.069 4.069 3 C 0.021 3.979 4 O -0.394 6.394 5 C -0.144 4.144 6 C -0.066 4.066 7 N -0.242 5.242 8 C -0.005 4.005 9 C -0.193 4.193 10 C -0.104 4.104 11 C -0.261 4.261 12 C -0.136 4.136 13 C -0.212 4.212 14 C 0.089 3.911 15 C -0.497 4.497 16 H 0.091 0.909 17 C -0.173 4.173 18 N -0.455 5.455 19 Si 0.779 3.221 20 H -0.182 1.182 21 H -0.193 1.193 22 H -0.194 1.194 23 C -0.084 4.084 24 H 0.061 0.939 25 H 0.080 0.920 26 H 0.088 0.912 27 H 0.063 0.937 28 H 0.083 0.917 29 H 0.244 0.756 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.051 0.949 34 H 0.043 0.957 35 H 0.093 0.907 36 H 0.131 0.869 37 H 0.131 0.869 38 H 0.120 0.880 39 H 0.117 0.883 40 H 0.093 0.907 41 H 0.068 0.932 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.237 10.976 -3.459 12.643 hybrid contribution -0.747 -0.461 0.652 1.094 sum -5.984 10.515 -2.806 12.419 Atomic orbital electron populations 1.21740 0.93012 1.01038 1.02590 1.21404 0.96591 0.94428 0.94514 1.22124 0.96685 0.90753 0.88381 1.86439 1.75447 1.30262 1.47252 1.22540 1.00252 0.94556 0.97089 1.23192 0.97515 0.95516 0.90389 1.64958 1.50726 1.06135 1.02366 1.20702 0.94819 0.89377 0.95633 1.19829 0.97548 0.99993 1.01955 1.20686 0.93201 0.97831 0.98693 1.20715 1.00172 1.02597 1.02606 1.20942 0.97293 0.99066 0.96277 1.21340 0.96161 1.01950 1.01742 1.17762 0.93085 0.89195 0.91026 1.19574 0.95119 1.38289 0.96669 0.90903 1.26470 0.99455 0.92737 0.98589 1.69888 1.26779 1.34935 1.13915 0.85523 0.79232 0.78816 0.78526 1.18203 1.19302 1.19397 1.22975 0.95940 0.93310 0.96159 0.93927 0.92026 0.91168 0.93672 0.91663 0.75602 0.92165 0.91597 0.92659 0.94921 0.95650 0.90704 0.86884 0.86936 0.87950 0.88335 0.90707 0.93163 0.89483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.11 8.07 71.98 0.58 -2.53 16 2 C -0.07 -1.87 0.77 -51.30 -0.04 -1.91 16 3 C 0.10 2.15 5.61 71.98 0.40 2.55 16 4 O -0.59 -12.48 12.71 -148.98 -1.89 -14.37 16 5 C -0.11 -3.59 5.96 31.80 0.19 -3.40 16 6 C 0.06 2.52 4.72 86.56 0.41 2.93 16 7 N -0.52 -19.85 5.20 -886.25 -4.61 -24.46 16 8 C 0.12 4.93 4.72 85.56 0.40 5.34 16 9 C -0.19 -9.08 5.40 -19.40 -0.10 -9.18 16 10 C -0.09 -3.78 9.66 22.21 0.21 -3.57 16 11 C -0.24 -10.74 10.05 22.46 0.23 -10.51 16 12 C -0.12 -5.63 10.02 22.22 0.22 -5.41 16 13 C -0.19 -10.31 8.68 22.73 0.20 -10.12 16 14 C 0.09 4.86 5.38 -21.29 -0.11 4.75 16 15 C -0.47 -24.11 5.49 23.46 0.13 -23.98 16 16 H 0.07 3.70 5.21 -2.91 -0.02 3.68 16 17 C 0.04 2.07 5.20 85.26 0.44 2.52 16 18 N -0.83 -43.66 10.87 21.83 0.24 -43.42 16 19 Si 0.96 38.79 29.58 68.60 2.03 40.81 16 20 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 21 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 22 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 23 C 0.04 1.28 5.91 86.44 0.51 1.79 16 24 H 0.04 1.13 8.14 -2.38 -0.02 1.11 16 25 H 0.06 1.53 7.62 -2.39 -0.02 1.51 16 26 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.05 1.03 8.11 -2.39 -0.02 1.01 16 28 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.39 4.52 9.12 -74.06 -0.68 3.85 16 30 H 0.06 2.10 7.84 -2.38 -0.02 2.08 16 31 H 0.07 2.18 7.85 -2.39 -0.02 2.16 16 32 H 0.05 2.76 6.91 -2.39 -0.02 2.74 16 33 H 0.03 1.39 6.35 -2.39 -0.02 1.38 16 34 H 0.03 1.08 6.09 -2.39 -0.01 1.07 16 35 H 0.07 2.64 7.88 -2.39 -0.02 2.62 16 36 H 0.11 4.30 8.06 -2.91 -0.02 4.28 16 37 H 0.11 4.29 8.06 -2.91 -0.02 4.27 16 38 H 0.10 4.40 8.06 -2.91 -0.02 4.38 16 39 H 0.10 5.56 6.17 -2.91 -0.02 5.54 16 40 H 0.28 13.67 8.30 -92.71 -0.77 12.90 16 41 H 0.05 1.39 7.31 -2.39 -0.02 1.37 16 42 H 0.09 2.24 7.68 -2.39 -0.02 2.22 16 Total: -1.00 -60.54 326.36 -0.22 -60.76 By element: Atomic # 1 Polarization: 31.06 SS G_CDS: 0.34 Total: 31.40 kcal Atomic # 6 Polarization: -54.40 SS G_CDS: 3.67 Total: -50.73 kcal Atomic # 7 Polarization: -63.51 SS G_CDS: -4.37 Total: -67.87 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: -1.89 Total: -14.37 kcal Atomic # 14 Polarization: 38.79 SS G_CDS: 2.03 Total: 40.81 kcal Total: -60.54 -0.22 -60.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235511033.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.382 kcal (2) G-P(sol) polarization free energy of solvation -60.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds