Wall clock time and date at job start Mon Mar 30 2020 01:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.53944 * 2 1 4 4 C 1.53102 * 109.50494 * 120.10297 * 2 1 3 5 5 N 1.47016 * 109.25686 * 176.78630 * 4 2 1 6 6 C 1.46896 * 111.00042 * 177.61331 * 5 4 2 7 7 C 1.50705 * 109.47100 * 170.00263 * 6 5 4 8 8 C 1.37644 * 120.12415 * 259.97558 * 7 6 5 9 9 C 1.38608 * 120.24545 * 180.02562 * 8 7 6 10 10 C 1.38656 * 120.50735 * 359.97438 * 9 8 7 11 11 C 1.37598 * 120.24410 * 359.73362 * 10 9 8 12 12 C 1.40694 * 120.12966 * 79.99831 * 7 6 5 13 13 C 1.41390 * 120.24427 * 359.95388 * 12 7 6 14 14 H 1.08001 * 119.99985 * 334.46153 * 13 12 7 15 15 C 1.39941 * 120.00062 * 154.73740 * 13 12 7 16 16 N 1.30824 * 120.00240 * 342.93305 * 15 13 12 17 17 Si 1.86808 * 120.00371 * 162.92879 * 15 13 12 18 18 H 1.48501 * 109.46629 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47128 * 119.99586 * 17 15 13 20 20 H 1.48494 * 109.47145 * 240.00037 * 17 15 13 21 21 C 1.47015 * 110.75324 * 301.38819 * 5 4 2 22 22 C 1.53100 * 109.25860 * 58.61658 * 21 5 4 23 23 O 1.43012 * 109.50848 * 239.89176 * 2 1 3 24 24 H 1.09004 * 109.47698 * 299.89046 * 1 2 3 25 25 H 1.08995 * 109.47424 * 59.89411 * 1 2 3 26 26 H 1.09004 * 109.46923 * 179.89390 * 1 2 3 27 27 H 1.09008 * 109.46977 * 180.10447 * 3 2 1 28 28 H 1.08998 * 109.47382 * 300.10517 * 3 2 1 29 29 H 1.09003 * 109.47058 * 60.10911 * 3 2 1 30 30 H 1.09002 * 109.50125 * 56.85748 * 4 2 1 31 31 H 1.08996 * 109.51091 * 296.72454 * 4 2 1 32 32 H 1.08994 * 109.47343 * 50.00059 * 6 5 4 33 33 H 1.09000 * 109.47028 * 289.99654 * 6 5 4 34 34 H 1.08002 * 119.87578 * 0.02562 * 8 7 6 35 35 H 1.08001 * 119.74973 * 179.97438 * 9 8 7 36 36 H 1.07994 * 119.88457 * 179.97438 * 10 9 8 37 37 H 1.08004 * 120.13372 * 180.28199 * 11 10 9 38 38 H 0.97002 * 120.00356 * 179.97438 * 16 15 13 39 39 H 1.08994 * 109.50825 * 178.55119 * 21 5 4 40 40 H 1.09000 * 109.50648 * 298.68136 * 21 5 4 41 41 H 1.08997 * 109.50805 * 183.22235 * 22 21 5 42 42 H 1.08996 * 109.50842 * 63.08937 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0417 1.4419 0.0000 4 6 2.0411 -0.7238 1.2485 5 7 3.5092 -0.7883 1.2046 6 6 4.0445 -1.4267 2.4145 7 6 5.5156 -1.6975 2.2306 8 6 5.9485 -2.9590 1.8902 9 6 7.3010 -3.2110 1.7210 10 6 8.2324 -2.1981 1.8915 11 6 7.8219 -0.9281 2.2259 12 6 6.4517 -0.6621 2.4067 13 6 6.0186 0.6378 2.7559 14 1 5.0213 0.9622 2.4978 15 6 6.8841 1.5059 3.4308 16 7 7.9471 1.0346 4.0304 17 14 6.5217 3.3380 3.4758 18 1 5.2693 3.6133 2.7268 19 1 6.3626 3.7767 4.8856 20 1 7.6454 4.0803 2.8502 21 6 3.9640 -1.4883 -0.0056 22 6 3.4335 -0.7567 -1.2415 23 8 2.0075 -0.6762 -1.1661 24 1 -0.3635 0.5121 0.8910 25 1 -0.3634 0.5154 -0.8890 26 1 -0.3633 -1.0277 -0.0019 27 1 3.1317 1.4406 -0.0019 28 1 1.6774 1.9567 -0.8890 29 1 1.6805 1.9556 0.8910 30 1 1.6331 -1.7342 1.2760 31 1 1.7272 -0.1794 2.1391 32 1 3.5214 -2.3665 2.5912 33 1 3.9010 -0.7647 3.2684 34 1 5.2318 -3.7554 1.7544 35 1 7.6319 -4.2038 1.4543 36 1 9.2837 -2.4057 1.7575 37 1 8.5486 -0.1394 2.3538 38 1 8.5472 1.6364 4.4979 39 1 5.0535 -1.5019 -0.0305 40 1 3.5866 -2.5109 0.0019 41 1 3.7201 -1.3041 -2.1394 42 1 3.8534 0.2485 -1.2776 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235513140.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:00 Heat of formation + Delta-G solvation = -26.647023 kcal Electronic energy + Delta-G solvation = -22336.554635 eV Core-core repulsion = 19280.925365 eV Total energy + Delta-G solvation = -3055.629270 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.75754 -37.77481 -35.14084 -33.62014 -33.34101 -30.53262 -29.42538 -28.61517 -27.11041 -26.07847 -24.92748 -23.60465 -21.74114 -20.94224 -19.35433 -18.90468 -17.12437 -16.07771 -15.89653 -15.29668 -14.90674 -14.57773 -14.42613 -14.35202 -13.63603 -13.48823 -13.22428 -12.75126 -12.58443 -12.25673 -12.06674 -11.84875 -11.62944 -11.49002 -11.33425 -11.27924 -11.13552 -11.04677 -10.84794 -10.70175 -10.55421 -10.32369 -9.97268 -9.52268 -9.31910 -9.19695 -9.08725 -7.72623 -7.35515 -7.29980 -6.73430 -4.30564 2.77010 2.94289 3.09741 3.16021 3.25066 3.96333 3.97977 4.45145 4.68510 4.99952 5.16715 5.21831 5.47303 5.61519 5.63907 5.72847 5.74486 5.82671 5.83919 5.91082 5.98354 6.03237 6.14843 6.16803 6.22619 6.28806 6.39182 6.43589 6.48641 6.60869 6.65271 6.86486 7.13264 7.27204 7.38859 7.48168 7.59742 7.62479 7.70747 7.94334 8.08853 8.15600 8.32880 8.69665 8.95309 9.01800 10.21210 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.015109 B = 0.007406 C = 0.005497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.774494 B = 3779.765728 C = 5092.561600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.114 3.886 3 C -0.168 4.168 4 C 0.031 3.969 5 N -0.519 5.519 6 C 0.126 3.874 7 C -0.202 4.202 8 C -0.085 4.085 9 C -0.246 4.246 10 C -0.105 4.105 11 C -0.164 4.164 12 C 0.129 3.871 13 C -0.445 4.445 14 H 0.093 0.907 15 C 0.074 3.926 16 N -0.795 5.795 17 Si 0.902 3.098 18 H -0.258 1.258 19 H -0.277 1.277 20 H -0.274 1.274 21 C 0.026 3.974 22 C 0.061 3.939 23 O -0.384 6.384 24 H 0.069 0.931 25 H 0.062 0.938 26 H 0.058 0.942 27 H 0.078 0.922 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.032 0.968 31 H 0.079 0.921 32 H 0.014 0.986 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.116 0.884 38 H 0.278 0.722 39 H 0.098 0.902 40 H 0.029 0.971 41 H 0.089 0.911 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.954 0.166 -5.235 10.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.075 3.925 3 C -0.225 4.225 4 C -0.098 4.098 5 N -0.243 5.243 6 C 0.000 4.000 7 C -0.204 4.204 8 C -0.104 4.104 9 C -0.266 4.266 10 C -0.124 4.124 11 C -0.184 4.184 12 C 0.126 3.874 13 C -0.474 4.474 14 H 0.111 0.889 15 C -0.144 4.144 16 N -0.421 5.421 17 Si 0.727 3.273 18 H -0.181 1.181 19 H -0.202 1.202 20 H -0.199 1.199 21 C -0.103 4.103 22 C -0.015 4.015 23 O -0.304 6.304 24 H 0.088 0.912 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.097 0.903 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.050 0.950 31 H 0.097 0.903 32 H 0.032 0.968 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.134 0.866 38 H 0.089 0.911 39 H 0.116 0.884 40 H 0.047 0.953 41 H 0.108 0.892 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.717 0.659 -5.225 10.184 hybrid contribution 0.002 -0.032 0.443 0.444 sum -8.715 0.626 -4.782 9.960 Atomic orbital electron populations 1.21726 0.92937 1.02367 1.02284 1.21502 0.93818 0.92067 0.85114 1.22267 1.03733 0.95173 1.01352 1.22731 0.89725 0.98953 0.98355 1.62312 1.06314 1.53081 1.02603 1.20664 0.92558 0.95189 0.91562 1.19419 0.93203 0.93513 1.14282 1.20376 0.94696 0.95249 1.00053 1.20283 0.93278 0.97762 1.15262 1.20676 0.96829 0.94282 1.00589 1.21351 0.96789 0.95631 1.04605 1.17384 0.90677 0.91929 0.87386 1.19792 1.00447 0.96534 1.30669 0.88946 1.25975 0.94111 1.00994 0.93276 1.69847 1.11553 1.37029 1.23677 0.86351 0.79824 0.82539 0.78590 1.18145 1.20232 1.19937 1.22705 1.02514 0.94895 0.90138 1.22708 0.80632 1.00592 0.97619 1.87936 1.21577 1.77927 1.42928 0.91202 0.91928 0.92247 0.90284 0.92994 0.91979 0.95013 0.90265 0.96769 0.90391 0.90072 0.89843 0.89721 0.86633 0.91105 0.88385 0.95317 0.89249 0.92074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 8.85 37.15 0.33 -1.24 16 2 C 0.11 1.66 1.11 -90.57 -0.10 1.56 16 3 C -0.17 -2.41 8.17 37.16 0.30 -2.11 16 4 C 0.03 0.49 4.32 -3.71 -0.02 0.47 16 5 N -0.52 -9.54 3.97 -235.75 -0.94 -10.48 16 6 C 0.13 2.55 4.60 -4.98 -0.02 2.53 16 7 C -0.20 -4.63 3.77 -103.91 -0.39 -5.03 16 8 C -0.08 -1.87 8.69 -39.66 -0.34 -2.21 16 9 C -0.25 -5.48 10.05 -39.29 -0.39 -5.88 16 10 C -0.11 -2.46 10.02 -39.66 -0.40 -2.85 16 11 C -0.16 -4.19 8.69 -38.87 -0.34 -4.53 16 12 C 0.13 3.28 5.56 -106.82 -0.59 2.69 16 13 C -0.45 -11.24 8.19 -37.75 -0.31 -11.55 16 14 H 0.09 2.30 6.84 -52.49 -0.36 1.94 16 15 C 0.07 1.81 5.15 -17.34 -0.09 1.72 16 16 N -0.80 -20.25 10.99 55.55 0.61 -19.64 16 17 Si 0.90 18.53 29.59 -169.99 -5.03 13.50 16 18 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 19 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 20 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 21 C 0.03 0.46 4.90 -3.71 -0.02 0.44 16 22 C 0.06 0.96 6.61 37.21 0.25 1.21 16 23 O -0.38 -6.15 10.28 -35.23 -0.36 -6.51 16 24 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.08 1.31 6.12 -51.92 -0.32 1.00 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.01 0.27 7.94 -51.93 -0.41 -0.14 16 33 H 0.08 1.65 7.34 -51.93 -0.38 1.27 16 34 H 0.08 1.63 8.03 -52.49 -0.42 1.21 16 35 H 0.08 1.67 8.06 -52.49 -0.42 1.25 16 36 H 0.08 1.79 8.06 -52.49 -0.42 1.37 16 37 H 0.12 3.07 6.22 -52.48 -0.33 2.74 16 38 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 39 H 0.10 1.96 6.28 -51.93 -0.33 1.64 16 40 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.06 0.98 6.49 -51.93 -0.34 0.64 16 LS Contribution 327.80 15.07 4.94 4.94 Total: -1.00 -26.44 327.80 -9.58 -36.02 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -6.67 Total: 6.95 kcal Atomic # 6 Polarization: -22.65 SS G_CDS: -2.14 Total: -24.79 kcal Atomic # 7 Polarization: -29.79 SS G_CDS: -0.33 Total: -30.12 kcal Atomic # 8 Polarization: -6.15 SS G_CDS: -0.36 Total: -6.51 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.03 Total: 13.50 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -26.44 -9.58 -36.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235513140.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.377 kcal (2) G-P(sol) polarization free energy of solvation -26.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds