Wall clock time and date at job start Mon Mar 30 2020 01:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.53944 * 2 1 4 4 C 1.53102 * 109.50494 * 120.10297 * 2 1 3 5 5 N 1.47016 * 109.25686 * 176.78630 * 4 2 1 6 6 C 1.46896 * 111.00042 * 177.61331 * 5 4 2 7 7 C 1.50705 * 109.47100 * 170.00263 * 6 5 4 8 8 C 1.37644 * 120.12415 * 259.97558 * 7 6 5 9 9 C 1.38608 * 120.24545 * 180.02562 * 8 7 6 10 10 C 1.38656 * 120.50735 * 359.97438 * 9 8 7 11 11 C 1.37598 * 120.24410 * 359.73362 * 10 9 8 12 12 C 1.40694 * 120.12966 * 79.99831 * 7 6 5 13 13 C 1.41390 * 120.24427 * 359.95388 * 12 7 6 14 14 H 1.08001 * 119.99985 * 334.46153 * 13 12 7 15 15 C 1.39941 * 120.00062 * 154.73740 * 13 12 7 16 16 N 1.30824 * 120.00240 * 342.93305 * 15 13 12 17 17 Si 1.86808 * 120.00371 * 162.92879 * 15 13 12 18 18 H 1.48501 * 109.46629 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47128 * 119.99586 * 17 15 13 20 20 H 1.48494 * 109.47145 * 240.00037 * 17 15 13 21 21 C 1.47015 * 110.75324 * 301.38819 * 5 4 2 22 22 C 1.53100 * 109.25860 * 58.61658 * 21 5 4 23 23 O 1.43012 * 109.50848 * 239.89176 * 2 1 3 24 24 H 1.09004 * 109.47698 * 299.89046 * 1 2 3 25 25 H 1.08995 * 109.47424 * 59.89411 * 1 2 3 26 26 H 1.09004 * 109.46923 * 179.89390 * 1 2 3 27 27 H 1.09008 * 109.46977 * 180.10447 * 3 2 1 28 28 H 1.08998 * 109.47382 * 300.10517 * 3 2 1 29 29 H 1.09003 * 109.47058 * 60.10911 * 3 2 1 30 30 H 1.09002 * 109.50125 * 56.85748 * 4 2 1 31 31 H 1.08996 * 109.51091 * 296.72454 * 4 2 1 32 32 H 1.08994 * 109.47343 * 50.00059 * 6 5 4 33 33 H 1.09000 * 109.47028 * 289.99654 * 6 5 4 34 34 H 1.08002 * 119.87578 * 0.02562 * 8 7 6 35 35 H 1.08001 * 119.74973 * 179.97438 * 9 8 7 36 36 H 1.07994 * 119.88457 * 179.97438 * 10 9 8 37 37 H 1.08004 * 120.13372 * 180.28199 * 11 10 9 38 38 H 0.97002 * 120.00356 * 179.97438 * 16 15 13 39 39 H 1.08994 * 109.50825 * 178.55119 * 21 5 4 40 40 H 1.09000 * 109.50648 * 298.68136 * 21 5 4 41 41 H 1.08997 * 109.50805 * 183.22235 * 22 21 5 42 42 H 1.08996 * 109.50842 * 63.08937 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0417 1.4419 0.0000 4 6 2.0411 -0.7238 1.2485 5 7 3.5092 -0.7883 1.2046 6 6 4.0445 -1.4267 2.4145 7 6 5.5156 -1.6975 2.2306 8 6 5.9485 -2.9590 1.8902 9 6 7.3010 -3.2110 1.7210 10 6 8.2324 -2.1981 1.8915 11 6 7.8219 -0.9281 2.2259 12 6 6.4517 -0.6621 2.4067 13 6 6.0186 0.6378 2.7559 14 1 5.0213 0.9622 2.4978 15 6 6.8841 1.5059 3.4308 16 7 7.9471 1.0346 4.0304 17 14 6.5217 3.3380 3.4758 18 1 5.2693 3.6133 2.7268 19 1 6.3626 3.7767 4.8856 20 1 7.6454 4.0803 2.8502 21 6 3.9640 -1.4883 -0.0056 22 6 3.4335 -0.7567 -1.2415 23 8 2.0075 -0.6762 -1.1661 24 1 -0.3635 0.5121 0.8910 25 1 -0.3634 0.5154 -0.8890 26 1 -0.3633 -1.0277 -0.0019 27 1 3.1317 1.4406 -0.0019 28 1 1.6774 1.9567 -0.8890 29 1 1.6805 1.9556 0.8910 30 1 1.6331 -1.7342 1.2760 31 1 1.7272 -0.1794 2.1391 32 1 3.5214 -2.3665 2.5912 33 1 3.9010 -0.7647 3.2684 34 1 5.2318 -3.7554 1.7544 35 1 7.6319 -4.2038 1.4543 36 1 9.2837 -2.4057 1.7575 37 1 8.5486 -0.1394 2.3538 38 1 8.5472 1.6364 4.4979 39 1 5.0535 -1.5019 -0.0305 40 1 3.5866 -2.5109 0.0019 41 1 3.7201 -1.3041 -2.1394 42 1 3.8534 0.2485 -1.2776 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235513140.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:59 Heat of formation + Delta-G solvation = -40.370440 kcal Electronic energy + Delta-G solvation = -22337.149727 eV Core-core repulsion = 19280.925365 eV Total energy + Delta-G solvation = -3056.224362 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.07434 -39.48980 -36.62105 -35.45622 -34.50998 -32.23043 -31.26533 -29.97067 -28.14938 -27.68785 -26.63244 -25.00618 -23.15585 -22.78533 -21.06987 -20.16400 -18.98269 -17.43276 -17.21998 -16.98036 -16.40635 -16.06690 -15.95870 -15.62064 -15.27020 -15.08663 -14.71057 -14.36362 -13.99282 -13.52826 -13.40164 -13.24955 -12.99462 -12.91916 -12.83131 -12.74977 -12.70204 -12.55712 -12.33852 -12.15611 -12.03897 -11.98342 -11.32524 -11.23057 -11.05024 -10.98326 -10.45988 -9.28081 -9.21724 -9.01759 -8.56662 -6.21766 0.99603 1.12098 1.40349 1.53194 1.55491 2.24335 2.77675 2.82546 3.09153 3.81816 3.87529 4.02768 4.05904 4.14794 4.26802 4.33358 4.41782 4.52934 4.56760 4.66493 4.69565 4.74304 4.76642 4.81174 4.85242 4.96250 4.98713 5.04587 5.11183 5.16336 5.28371 5.30622 5.40389 5.48505 5.55514 5.79581 6.00254 6.15417 6.21631 6.26123 6.29997 6.34904 6.47825 6.80751 7.07201 7.14390 8.40085 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.015109 B = 0.007406 C = 0.005497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.774494 B = 3779.765728 C = 5092.561600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.110 3.890 3 C -0.164 4.164 4 C 0.031 3.969 5 N -0.529 5.529 6 C 0.134 3.866 7 C -0.201 4.201 8 C -0.089 4.089 9 C -0.244 4.244 10 C -0.112 4.112 11 C -0.193 4.193 12 C 0.102 3.898 13 C -0.467 4.467 14 H 0.089 0.911 15 C 0.034 3.966 16 N -0.830 5.830 17 Si 0.969 3.031 18 H -0.256 1.256 19 H -0.270 1.270 20 H -0.271 1.271 21 C 0.033 3.967 22 C 0.066 3.934 23 O -0.390 6.390 24 H 0.087 0.913 25 H 0.071 0.929 26 H 0.061 0.939 27 H 0.051 0.949 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.034 0.966 31 H 0.087 0.913 32 H 0.025 0.975 33 H 0.063 0.937 34 H 0.105 0.895 35 H 0.111 0.889 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.284 0.716 39 H 0.071 0.929 40 H 0.029 0.971 41 H 0.110 0.890 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.730 0.069 -5.898 12.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.071 3.929 3 C -0.221 4.221 4 C -0.097 4.097 5 N -0.254 5.254 6 C 0.008 3.992 7 C -0.203 4.203 8 C -0.108 4.108 9 C -0.264 4.264 10 C -0.131 4.131 11 C -0.213 4.213 12 C 0.099 3.901 13 C -0.496 4.496 14 H 0.107 0.893 15 C -0.180 4.180 16 N -0.456 5.456 17 Si 0.791 3.209 18 H -0.179 1.179 19 H -0.195 1.195 20 H -0.196 1.196 21 C -0.096 4.096 22 C -0.010 4.010 23 O -0.309 6.309 24 H 0.106 0.894 25 H 0.090 0.910 26 H 0.081 0.919 27 H 0.070 0.930 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.052 0.948 31 H 0.105 0.895 32 H 0.044 0.956 33 H 0.081 0.919 34 H 0.123 0.877 35 H 0.129 0.871 36 H 0.121 0.879 37 H 0.114 0.886 38 H 0.094 0.906 39 H 0.090 0.910 40 H 0.047 0.953 41 H 0.128 0.872 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.501 0.550 -5.894 12.055 hybrid contribution 0.548 -0.123 0.625 0.840 sum -9.954 0.428 -5.269 11.270 Atomic orbital electron populations 1.21726 0.90330 1.03037 1.03673 1.21711 0.95691 0.91572 0.83919 1.22220 1.01899 0.95546 1.02444 1.22835 0.87794 0.99471 0.99626 1.62227 1.08205 1.52963 1.01963 1.20506 0.91222 0.95448 0.92058 1.19724 0.94357 0.93397 1.12779 1.20664 0.95288 0.95495 0.99338 1.20636 0.93225 0.98630 1.13867 1.20919 0.98233 0.93813 1.00112 1.21322 0.96820 0.96249 1.06863 1.17698 0.91220 0.92927 0.88227 1.19897 1.00691 0.97297 1.31762 0.89318 1.26716 0.93776 1.04960 0.92545 1.69907 1.12593 1.38567 1.24579 0.85337 0.79567 0.77221 0.78730 1.17895 1.19508 1.19594 1.22597 1.00894 0.95220 0.90870 1.22679 0.80743 1.00237 0.97369 1.87941 1.21290 1.78129 1.43561 0.89384 0.91022 0.91949 0.93016 0.91705 0.91093 0.94755 0.89493 0.95644 0.91872 0.87707 0.87076 0.87907 0.88637 0.90602 0.91044 0.95289 0.87161 0.92766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.61 8.85 71.98 0.64 -1.98 16 2 C 0.11 2.96 1.11 -10.76 -0.01 2.95 16 3 C -0.16 -4.43 8.17 71.98 0.59 -3.85 16 4 C 0.03 0.92 4.32 86.32 0.37 1.30 16 5 N -0.53 -19.18 3.97 -899.78 -3.57 -22.76 16 6 C 0.13 5.39 4.60 85.56 0.39 5.78 16 7 C -0.20 -9.24 3.77 -19.40 -0.07 -9.31 16 8 C -0.09 -3.82 8.69 22.22 0.19 -3.63 16 9 C -0.24 -10.55 10.05 22.46 0.23 -10.33 16 10 C -0.11 -5.25 10.02 22.22 0.22 -5.03 16 11 C -0.19 -10.15 8.69 22.73 0.20 -9.95 16 12 C 0.10 5.32 5.56 -21.29 -0.12 5.20 16 13 C -0.47 -24.26 8.19 23.46 0.19 -24.07 16 14 H 0.09 4.53 6.84 -2.91 -0.02 4.51 16 15 C 0.03 1.70 5.15 85.26 0.44 2.14 16 16 N -0.83 -43.52 10.99 21.83 0.24 -43.28 16 17 Si 0.97 38.57 29.59 68.60 2.03 40.60 16 18 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 19 H -0.27 -10.36 7.11 99.48 0.71 -9.66 16 20 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 21 C 0.03 1.14 4.90 86.31 0.42 1.56 16 22 C 0.07 2.01 6.61 72.02 0.48 2.49 16 23 O -0.39 -11.68 10.28 -148.98 -1.53 -13.21 16 24 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 25 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 27 H 0.05 1.69 6.12 -2.38 -0.01 1.67 16 28 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 32 H 0.03 0.95 7.94 -2.39 -0.02 0.93 16 33 H 0.06 2.71 7.34 -2.39 -0.02 2.69 16 34 H 0.10 3.96 8.03 -2.91 -0.02 3.94 16 35 H 0.11 4.15 8.06 -2.91 -0.02 4.12 16 36 H 0.10 4.31 8.06 -2.91 -0.02 4.28 16 37 H 0.10 5.32 6.22 -2.91 -0.02 5.30 16 38 H 0.28 13.57 8.30 -92.71 -0.77 12.80 16 39 H 0.07 2.88 6.28 -2.39 -0.02 2.86 16 40 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.11 2.83 8.14 -2.39 -0.02 2.81 16 42 H 0.05 1.72 6.49 -2.39 -0.02 1.70 16 Total: -1.00 -57.14 327.80 2.31 -54.83 By element: Atomic # 1 Polarization: 29.56 SS G_CDS: 0.99 Total: 30.54 kcal Atomic # 6 Polarization: -50.88 SS G_CDS: 4.16 Total: -46.72 kcal Atomic # 7 Polarization: -62.71 SS G_CDS: -3.33 Total: -66.04 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: -1.53 Total: -13.21 kcal Atomic # 14 Polarization: 38.57 SS G_CDS: 2.03 Total: 40.60 kcal Total: -57.14 2.31 -54.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235513140.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.457 kcal (2) G-P(sol) polarization free energy of solvation -57.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds