Wall clock time and date at job start Mon Mar 30 2020 01:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42903 * 109.50247 * 2 1 4 4 C 1.53117 * 109.50776 * 239.91612 * 2 1 3 5 5 C 1.53200 * 109.12002 * 182.39943 * 4 2 1 6 6 C 1.53038 * 109.29464 * 57.63555 * 5 4 2 7 7 N 1.46851 * 109.52491 * 300.81574 * 6 5 4 8 8 C 1.46894 * 111.00249 * 185.84133 * 7 6 5 9 9 C 1.50698 * 109.47079 * 45.79168 * 8 7 6 10 10 C 1.37631 * 120.12898 * 259.72333 * 9 8 7 11 11 C 1.38614 * 120.24971 * 179.72209 * 10 9 8 12 12 C 1.38660 * 120.49871 * 0.55789 * 11 10 9 13 13 C 1.37591 * 120.24651 * 359.72613 * 12 11 10 14 14 C 1.40703 * 120.12714 * 79.99933 * 9 8 7 15 15 C 1.41397 * 120.24332 * 359.97438 * 14 9 8 16 16 H 1.07999 * 119.99790 * 334.19379 * 15 14 9 17 17 C 1.39940 * 119.99862 * 154.20051 * 15 14 9 18 18 N 1.30821 * 120.00358 * 343.48937 * 17 15 14 19 19 Si 1.86804 * 119.99925 * 163.49608 * 17 15 14 20 20 H 1.48494 * 109.47357 * 89.99849 * 19 17 15 21 21 H 1.48497 * 109.47153 * 209.99880 * 19 17 15 22 22 H 1.48500 * 109.46719 * 329.99648 * 19 17 15 23 23 C 1.46849 * 111.19659 * 61.74357 * 7 6 5 24 24 H 1.09000 * 109.47138 * 60.00584 * 1 2 3 25 25 H 1.08996 * 109.47196 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47300 * 300.00239 * 1 2 3 27 27 H 0.96698 * 113.99500 * 299.99773 * 3 2 1 28 28 H 1.08995 * 109.52135 * 302.27575 * 4 2 1 29 29 H 1.09002 * 109.51956 * 62.46005 * 4 2 1 30 30 H 1.09001 * 109.49677 * 297.68966 * 5 4 2 31 31 H 1.08997 * 109.52784 * 177.59515 * 5 4 2 32 32 H 1.09005 * 109.46526 * 180.80386 * 6 5 4 33 33 H 1.08994 * 109.46574 * 60.83237 * 6 5 4 34 34 H 1.09000 * 109.47195 * 165.79299 * 8 7 6 35 35 H 1.09000 * 109.47357 * 285.79032 * 8 7 6 36 36 H 1.08005 * 119.87513 * 359.97438 * 10 9 8 37 37 H 1.07998 * 119.75272 * 180.25712 * 11 10 9 38 38 H 1.08001 * 119.87388 * 179.74645 * 12 11 10 39 39 H 1.08007 * 120.12540 * 180.02562 * 13 12 11 40 40 H 0.97000 * 120.00190 * 180.02562 * 18 17 15 41 41 H 1.08997 * 109.46530 * 178.24247 * 23 7 6 42 42 H 1.09004 * 109.45927 * 58.27266 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0070 1.3470 0.0000 4 6 2.0413 -0.7235 -1.2489 5 6 3.5720 -0.7709 -1.2099 6 6 4.0237 -1.4715 0.0735 7 7 3.5093 -0.7407 1.2388 8 6 4.0371 -1.3040 2.4886 9 6 5.5198 -1.5343 2.3490 10 6 6.0009 -2.7961 2.0831 11 6 7.3639 -3.0097 1.9485 12 6 8.2582 -1.9597 2.0911 13 6 7.8001 -0.6911 2.3627 14 6 6.4181 -0.4613 2.4956 15 6 5.9357 0.8384 2.7741 16 1 4.9361 1.1186 2.4763 17 6 6.7535 1.7615 3.4354 18 7 7.8170 1.3511 4.0772 19 14 6.3265 3.5798 3.4018 20 1 5.4506 3.9040 4.5562 21 1 7.5730 4.3826 3.4854 22 1 5.6166 3.8981 2.1369 23 6 2.0409 -0.7229 1.2485 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.7220 1.8652 -0.7651 28 1 1.6458 -1.7389 -1.2690 29 1 1.7151 -0.1868 -2.1398 30 1 3.9681 0.2444 -1.2289 31 1 3.9416 -1.3220 -2.0746 32 1 5.1129 -1.4942 0.1110 33 1 3.6388 -2.4912 0.0855 34 1 3.8530 -0.6080 3.3070 35 1 3.5405 -2.2512 2.6985 36 1 5.3136 -3.6222 1.9749 37 1 7.7324 -4.0023 1.7358 38 1 9.3184 -2.1383 1.9882 39 1 8.4984 0.1255 2.4729 40 1 8.3837 1.9910 4.5359 41 1 1.6899 -0.2018 2.1391 42 1 1.6653 -1.7461 1.2548 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235523208.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:46 Heat of formation + Delta-G solvation = -35.558110 kcal Electronic energy + Delta-G solvation = -22264.454567 eV Core-core repulsion = 19208.438883 eV Total energy + Delta-G solvation = -3056.015684 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.42517 -37.67796 -35.55421 -33.52035 -32.68365 -31.17645 -29.99619 -29.31851 -26.42750 -25.85265 -24.78001 -22.53441 -21.43568 -20.86052 -19.52185 -19.13308 -17.01877 -16.13499 -15.59829 -15.18367 -15.03251 -14.44411 -14.19756 -14.14164 -13.66880 -13.26543 -13.22292 -12.83614 -12.51645 -12.36203 -11.92322 -11.84221 -11.65572 -11.48039 -11.23900 -11.19538 -10.96494 -10.90711 -10.55013 -10.51729 -10.45806 -10.22271 -9.88889 -9.52381 -9.41659 -9.16982 -9.02950 -7.53298 -7.26489 -7.19313 -6.63860 -4.20105 2.86856 3.02922 3.17087 3.25066 3.35572 4.07024 4.36964 4.58031 4.78040 4.86569 5.01958 5.13520 5.34014 5.54377 5.60947 5.74725 5.81005 5.87153 5.88461 5.96660 5.97162 6.10071 6.13400 6.19672 6.25614 6.31995 6.38653 6.54910 6.59618 6.72307 6.79838 6.95660 7.23171 7.36022 7.47888 7.71676 7.78827 7.85173 8.00743 8.05881 8.17013 8.26617 8.42125 8.80979 9.05398 9.11538 10.30611 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.014927 B = 0.007442 C = 0.005504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.347950 B = 3761.605741 C = 5086.447829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.134 3.866 3 O -0.534 6.534 4 C -0.143 4.143 5 C -0.113 4.113 6 C 0.061 3.939 7 N -0.511 5.511 8 C 0.126 3.874 9 C -0.200 4.200 10 C -0.086 4.086 11 C -0.249 4.249 12 C -0.106 4.106 13 C -0.164 4.164 14 C 0.130 3.870 15 C -0.441 4.441 16 H 0.096 0.904 17 C 0.073 3.927 18 N -0.798 5.798 19 Si 0.904 3.096 20 H -0.272 1.272 21 H -0.280 1.280 22 H -0.258 1.258 23 C 0.071 3.929 24 H 0.056 0.944 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.362 0.638 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.057 0.943 32 H 0.091 0.909 33 H 0.015 0.985 34 H 0.076 0.924 35 H 0.011 0.989 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.116 0.884 40 H 0.278 0.722 41 H 0.075 0.925 42 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.530 -1.539 -7.508 13.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.093 3.907 3 O -0.337 6.337 4 C -0.181 4.181 5 C -0.151 4.151 6 C -0.067 4.067 7 N -0.235 5.235 8 C 0.000 4.000 9 C -0.202 4.202 10 C -0.105 4.105 11 C -0.268 4.268 12 C -0.125 4.125 13 C -0.184 4.184 14 C 0.127 3.873 15 C -0.471 4.471 16 H 0.114 0.886 17 C -0.144 4.144 18 N -0.424 5.424 19 Si 0.729 3.271 20 H -0.197 1.197 21 H -0.205 1.205 22 H -0.181 1.181 23 C -0.058 4.058 24 H 0.075 0.925 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.207 0.793 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.096 0.904 31 H 0.076 0.924 32 H 0.109 0.891 33 H 0.033 0.967 34 H 0.095 0.905 35 H 0.029 0.971 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.134 0.866 40 H 0.088 0.912 41 H 0.094 0.906 42 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -9.911 -1.160 -6.806 12.078 hybrid contribution -0.631 0.012 -0.388 0.741 sum -10.542 -1.148 -7.193 12.814 Atomic orbital electron populations 1.22479 0.96411 1.02291 1.02327 1.21195 0.91038 0.83427 0.95085 1.86801 1.76752 1.22125 1.48034 1.22281 0.97730 1.00548 0.97553 1.21536 0.94096 1.02365 0.97091 1.22055 1.01902 0.93101 0.89664 1.61893 1.04777 1.54298 1.02522 1.20655 0.92628 0.95608 0.91108 1.19416 0.93130 0.93144 1.14508 1.20354 0.94521 0.95176 1.00422 1.20259 0.93345 0.97212 1.16003 1.20660 0.96842 0.94108 1.00872 1.21346 0.96458 0.95573 1.04994 1.17384 0.90761 0.91976 0.87218 1.19832 1.01200 0.95316 1.30735 0.88643 1.25980 0.94010 1.01207 0.93184 1.69846 1.12841 1.36538 1.23185 0.86372 0.78581 0.82161 0.79996 1.19729 1.20541 1.18134 1.21990 0.89908 0.97015 0.96880 0.92475 0.92005 0.91770 0.79260 0.91960 0.92231 0.90430 0.92439 0.89102 0.96666 0.90532 0.97094 0.90153 0.89950 0.89812 0.86640 0.91172 0.90616 0.94809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.86 8.82 37.16 0.33 -1.53 16 2 C 0.13 1.81 1.00 -90.54 -0.09 1.72 16 3 O -0.53 -8.14 12.31 -35.23 -0.43 -8.58 16 4 C -0.14 -1.81 4.99 -26.57 -0.13 -1.94 16 5 C -0.11 -1.73 5.94 -26.61 -0.16 -1.89 16 6 C 0.06 1.10 4.81 -3.83 -0.02 1.09 16 7 N -0.51 -9.87 4.41 -236.11 -1.04 -10.91 16 8 C 0.13 2.66 4.60 -4.98 -0.02 2.63 16 9 C -0.20 -4.76 3.73 -103.91 -0.39 -5.14 16 10 C -0.09 -1.94 8.64 -39.66 -0.34 -2.28 16 11 C -0.25 -5.68 10.05 -39.29 -0.39 -6.08 16 12 C -0.11 -2.55 10.02 -39.66 -0.40 -2.95 16 13 C -0.16 -4.33 8.68 -38.88 -0.34 -4.67 16 14 C 0.13 3.42 5.56 -106.82 -0.59 2.83 16 15 C -0.44 -11.73 8.18 -37.74 -0.31 -12.04 16 16 H 0.10 2.56 6.85 -52.49 -0.36 2.20 16 17 C 0.07 1.87 5.16 -17.34 -0.09 1.78 16 18 N -0.80 -20.99 10.97 55.55 0.61 -20.38 16 19 Si 0.90 19.54 29.59 -169.99 -5.03 14.51 16 20 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 21 H -0.28 -5.91 7.11 56.52 0.40 -5.50 16 22 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 23 C 0.07 1.13 4.40 -3.83 -0.02 1.12 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.36 3.94 9.05 45.56 0.41 4.35 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.08 1.32 7.80 -51.93 -0.40 0.92 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.09 1.93 6.04 -51.93 -0.31 1.61 16 33 H 0.02 0.27 8.14 -51.93 -0.42 -0.16 16 34 H 0.08 1.72 7.34 -51.93 -0.38 1.33 16 35 H 0.01 0.21 7.93 -51.93 -0.41 -0.20 16 36 H 0.08 1.64 8.03 -52.48 -0.42 1.22 16 37 H 0.08 1.69 8.06 -52.49 -0.42 1.26 16 38 H 0.08 1.82 8.06 -52.49 -0.42 1.40 16 39 H 0.12 3.16 6.21 -52.48 -0.33 2.83 16 40 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 41 H 0.08 1.24 8.12 -51.93 -0.42 0.82 16 42 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 330.13 15.07 4.97 4.97 Total: -1.00 -28.57 330.13 -9.88 -38.45 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -5.99 Total: 9.29 kcal Atomic # 6 Polarization: -24.39 SS G_CDS: -2.96 Total: -27.35 kcal Atomic # 7 Polarization: -30.86 SS G_CDS: -0.43 Total: -31.29 kcal Atomic # 8 Polarization: -8.14 SS G_CDS: -0.43 Total: -8.58 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.03 Total: 14.51 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -28.57 -9.88 -38.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235523208.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.889 kcal (2) G-P(sol) polarization free energy of solvation -28.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds