Wall clock time and date at job start Mon Mar 30 2020 01:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42903 * 109.50247 * 2 1 4 4 C 1.53117 * 109.50776 * 239.91612 * 2 1 3 5 5 C 1.53200 * 109.12002 * 182.39943 * 4 2 1 6 6 C 1.53038 * 109.29464 * 57.63555 * 5 4 2 7 7 N 1.46851 * 109.52491 * 300.81574 * 6 5 4 8 8 C 1.46894 * 111.00249 * 185.84133 * 7 6 5 9 9 C 1.50698 * 109.47079 * 45.79168 * 8 7 6 10 10 C 1.37631 * 120.12898 * 259.72333 * 9 8 7 11 11 C 1.38614 * 120.24971 * 179.72209 * 10 9 8 12 12 C 1.38660 * 120.49871 * 0.55789 * 11 10 9 13 13 C 1.37591 * 120.24651 * 359.72613 * 12 11 10 14 14 C 1.40703 * 120.12714 * 79.99933 * 9 8 7 15 15 C 1.41397 * 120.24332 * 359.97438 * 14 9 8 16 16 H 1.07999 * 119.99790 * 334.19379 * 15 14 9 17 17 C 1.39940 * 119.99862 * 154.20051 * 15 14 9 18 18 N 1.30821 * 120.00358 * 343.48937 * 17 15 14 19 19 Si 1.86804 * 119.99925 * 163.49608 * 17 15 14 20 20 H 1.48494 * 109.47357 * 89.99849 * 19 17 15 21 21 H 1.48497 * 109.47153 * 209.99880 * 19 17 15 22 22 H 1.48500 * 109.46719 * 329.99648 * 19 17 15 23 23 C 1.46849 * 111.19659 * 61.74357 * 7 6 5 24 24 H 1.09000 * 109.47138 * 60.00584 * 1 2 3 25 25 H 1.08996 * 109.47196 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47300 * 300.00239 * 1 2 3 27 27 H 0.96698 * 113.99500 * 299.99773 * 3 2 1 28 28 H 1.08995 * 109.52135 * 302.27575 * 4 2 1 29 29 H 1.09002 * 109.51956 * 62.46005 * 4 2 1 30 30 H 1.09001 * 109.49677 * 297.68966 * 5 4 2 31 31 H 1.08997 * 109.52784 * 177.59515 * 5 4 2 32 32 H 1.09005 * 109.46526 * 180.80386 * 6 5 4 33 33 H 1.08994 * 109.46574 * 60.83237 * 6 5 4 34 34 H 1.09000 * 109.47195 * 165.79299 * 8 7 6 35 35 H 1.09000 * 109.47357 * 285.79032 * 8 7 6 36 36 H 1.08005 * 119.87513 * 359.97438 * 10 9 8 37 37 H 1.07998 * 119.75272 * 180.25712 * 11 10 9 38 38 H 1.08001 * 119.87388 * 179.74645 * 12 11 10 39 39 H 1.08007 * 120.12540 * 180.02562 * 13 12 11 40 40 H 0.97000 * 120.00190 * 180.02562 * 18 17 15 41 41 H 1.08997 * 109.46530 * 178.24247 * 23 7 6 42 42 H 1.09004 * 109.45927 * 58.27266 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0070 1.3470 0.0000 4 6 2.0413 -0.7235 -1.2489 5 6 3.5720 -0.7709 -1.2099 6 6 4.0237 -1.4715 0.0735 7 7 3.5093 -0.7407 1.2388 8 6 4.0371 -1.3040 2.4886 9 6 5.5198 -1.5343 2.3490 10 6 6.0009 -2.7961 2.0831 11 6 7.3639 -3.0097 1.9485 12 6 8.2582 -1.9597 2.0911 13 6 7.8001 -0.6911 2.3627 14 6 6.4181 -0.4613 2.4956 15 6 5.9357 0.8384 2.7741 16 1 4.9361 1.1186 2.4763 17 6 6.7535 1.7615 3.4354 18 7 7.8170 1.3511 4.0772 19 14 6.3265 3.5798 3.4018 20 1 5.4506 3.9040 4.5562 21 1 7.5730 4.3826 3.4854 22 1 5.6166 3.8981 2.1369 23 6 2.0409 -0.7229 1.2485 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.7220 1.8652 -0.7651 28 1 1.6458 -1.7389 -1.2690 29 1 1.7151 -0.1868 -2.1398 30 1 3.9681 0.2444 -1.2289 31 1 3.9416 -1.3220 -2.0746 32 1 5.1129 -1.4942 0.1110 33 1 3.6388 -2.4912 0.0855 34 1 3.8530 -0.6080 3.3070 35 1 3.5405 -2.2512 2.6985 36 1 5.3136 -3.6222 1.9749 37 1 7.7324 -4.0023 1.7358 38 1 9.3184 -2.1383 1.9882 39 1 8.4984 0.1255 2.4729 40 1 8.3837 1.9910 4.5359 41 1 1.6899 -0.2018 2.1391 42 1 1.6653 -1.7461 1.2548 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235523208.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:46 Heat of formation + Delta-G solvation = -53.600993 kcal Electronic energy + Delta-G solvation = -22265.236965 eV Core-core repulsion = 19208.438883 eV Total energy + Delta-G solvation = -3056.798082 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.73297 -39.37401 -36.94914 -35.44634 -34.01657 -32.30397 -31.69987 -31.18872 -27.70311 -27.36876 -26.55740 -23.89844 -22.83517 -22.70813 -20.99571 -20.61403 -18.96208 -17.30362 -17.16940 -16.75746 -16.47789 -15.98916 -15.82686 -15.45788 -15.14398 -14.84400 -14.64821 -14.34005 -13.99398 -13.48407 -13.44254 -13.35015 -13.00270 -12.81279 -12.74045 -12.73301 -12.69805 -12.49364 -12.28071 -12.09303 -11.78886 -11.68755 -11.30890 -11.20093 -11.00447 -10.89982 -10.56436 -9.21909 -9.18642 -8.87333 -8.55335 -6.20242 1.01469 1.13945 1.38547 1.50134 1.57512 2.25822 2.80636 3.15093 3.43810 3.86483 3.89103 3.92653 4.05277 4.23306 4.34211 4.41288 4.47453 4.54315 4.63341 4.67907 4.73019 4.75599 4.79126 4.84487 4.92582 5.01047 5.07930 5.12899 5.14954 5.28088 5.30876 5.40980 5.41932 5.48987 5.57335 5.81555 6.05191 6.22215 6.26887 6.38714 6.48780 6.50830 6.82979 7.08846 7.11586 7.16081 8.40875 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.014927 B = 0.007442 C = 0.005504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.347950 B = 3761.605741 C = 5086.447829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.132 3.868 3 O -0.565 6.565 4 C -0.135 4.135 5 C -0.110 4.110 6 C 0.065 3.935 7 N -0.529 5.529 8 C 0.133 3.867 9 C -0.198 4.198 10 C -0.090 4.090 11 C -0.244 4.244 12 C -0.113 4.113 13 C -0.193 4.193 14 C 0.100 3.900 15 C -0.468 4.468 16 H 0.083 0.917 17 C 0.034 3.966 18 N -0.830 5.830 19 Si 0.971 3.029 20 H -0.265 1.265 21 H -0.268 1.268 22 H -0.264 1.264 23 C 0.065 3.935 24 H 0.078 0.922 25 H 0.075 0.925 26 H 0.057 0.943 27 H 0.380 0.620 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.052 0.948 31 H 0.075 0.925 32 H 0.053 0.947 33 H 0.026 0.974 34 H 0.053 0.947 35 H 0.027 0.973 36 H 0.108 0.892 37 H 0.113 0.887 38 H 0.104 0.896 39 H 0.095 0.905 40 H 0.284 0.716 41 H 0.063 0.937 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.421 -2.417 -8.937 15.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.091 3.909 3 O -0.371 6.371 4 C -0.173 4.173 5 C -0.148 4.148 6 C -0.063 4.063 7 N -0.254 5.254 8 C 0.007 3.993 9 C -0.200 4.200 10 C -0.108 4.108 11 C -0.263 4.263 12 C -0.132 4.132 13 C -0.213 4.213 14 C 0.098 3.902 15 C -0.497 4.497 16 H 0.101 0.899 17 C -0.180 4.180 18 N -0.457 5.457 19 Si 0.793 3.207 20 H -0.190 1.190 21 H -0.193 1.193 22 H -0.188 1.188 23 C -0.063 4.063 24 H 0.097 0.903 25 H 0.094 0.906 26 H 0.076 0.924 27 H 0.228 0.772 28 H 0.096 0.904 29 H 0.104 0.896 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.072 0.928 33 H 0.044 0.956 34 H 0.071 0.929 35 H 0.045 0.955 36 H 0.126 0.874 37 H 0.131 0.869 38 H 0.122 0.878 39 H 0.113 0.887 40 H 0.094 0.906 41 H 0.082 0.918 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.809 -2.045 -8.248 14.549 hybrid contribution -0.038 0.146 0.027 0.153 sum -11.848 -1.899 -8.221 14.545 Atomic orbital electron populations 1.22379 0.93609 1.03440 1.03127 1.21269 0.92974 0.82580 0.94068 1.86751 1.77587 1.23269 1.49517 1.22238 0.95184 1.01724 0.98109 1.21491 0.96491 1.00717 0.96061 1.21970 0.99642 0.94043 0.90640 1.61786 1.07059 1.54668 1.01851 1.20484 0.91353 0.95783 0.91720 1.19748 0.94350 0.93104 1.12799 1.20666 0.95155 0.95438 0.99564 1.20650 0.93320 0.98162 1.14139 1.20921 0.98338 0.93590 1.00329 1.21310 0.96418 0.96224 1.07341 1.17704 0.91429 0.92940 0.88168 1.19857 1.01140 0.96420 1.32306 0.89881 1.26686 0.93827 1.05012 0.92466 1.69897 1.13839 1.37959 1.24018 0.85374 0.78602 0.77159 0.79593 1.18985 1.19304 1.18845 1.22144 0.87702 0.98306 0.98163 0.90321 0.90637 0.92404 0.77230 0.90404 0.89575 0.92879 0.90670 0.92848 0.95560 0.92895 0.95461 0.87362 0.86856 0.87802 0.88668 0.90597 0.91834 0.93123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.96 8.82 71.98 0.64 -2.32 16 2 C 0.13 3.28 1.00 -10.74 -0.01 3.27 16 3 O -0.56 -16.62 12.31 -148.98 -1.83 -18.45 16 4 C -0.13 -2.96 4.99 30.70 0.15 -2.81 16 5 C -0.11 -3.19 5.94 30.67 0.18 -3.01 16 6 C 0.06 2.32 4.81 86.33 0.42 2.73 16 7 N -0.53 -20.46 4.41 -900.92 -3.98 -24.44 16 8 C 0.13 5.69 4.60 85.56 0.39 6.08 16 9 C -0.20 -9.57 3.73 -19.41 -0.07 -9.64 16 10 C -0.09 -3.95 8.64 22.22 0.19 -3.76 16 11 C -0.24 -10.77 10.05 22.46 0.23 -10.54 16 12 C -0.11 -5.46 10.02 22.22 0.22 -5.24 16 13 C -0.19 -10.57 8.68 22.73 0.20 -10.38 16 14 C 0.10 5.51 5.56 -21.29 -0.12 5.39 16 15 C -0.47 -26.04 8.18 23.46 0.19 -25.85 16 16 H 0.08 4.69 6.85 -2.91 -0.02 4.67 16 17 C 0.03 1.79 5.16 85.26 0.44 2.23 16 18 N -0.83 -45.34 10.97 21.82 0.24 -45.10 16 19 Si 0.97 41.40 29.59 68.60 2.03 43.43 16 20 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 21 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 22 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 23 C 0.06 2.01 4.40 86.33 0.38 2.38 16 24 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 27 H 0.38 7.62 9.05 -74.06 -0.67 6.95 16 28 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.05 1.80 7.80 -2.39 -0.02 1.78 16 31 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.05 2.29 6.04 -2.38 -0.01 2.28 16 33 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.05 2.48 7.34 -2.39 -0.02 2.46 16 35 H 0.03 1.05 7.93 -2.39 -0.02 1.03 16 36 H 0.11 4.13 8.03 -2.91 -0.02 4.11 16 37 H 0.11 4.29 8.06 -2.91 -0.02 4.26 16 38 H 0.10 4.46 8.06 -2.91 -0.02 4.44 16 39 H 0.10 5.50 6.21 -2.91 -0.02 5.48 16 40 H 0.28 14.13 8.30 -92.71 -0.77 13.36 16 41 H 0.06 2.08 8.12 -2.39 -0.02 2.06 16 42 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -64.10 330.13 0.21 -63.89 By element: Atomic # 1 Polarization: 31.80 SS G_CDS: 0.33 Total: 32.13 kcal Atomic # 6 Polarization: -54.87 SS G_CDS: 3.43 Total: -51.45 kcal Atomic # 7 Polarization: -65.80 SS G_CDS: -3.74 Total: -69.54 kcal Atomic # 8 Polarization: -16.62 SS G_CDS: -1.83 Total: -18.45 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.43 kcal Total: -64.10 0.21 -63.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235523208.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.286 kcal (2) G-P(sol) polarization free energy of solvation -64.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds