Wall clock time and date at job start Mon Mar 30 2020 01:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42893 * 109.53619 * 2 1 4 4 C 1.53119 * 109.49874 * 120.09915 * 2 1 3 5 5 C 1.53117 * 109.15846 * 177.59272 * 4 2 1 6 6 C 1.53038 * 109.27758 * 302.34471 * 5 4 2 7 7 N 1.46839 * 109.52327 * 59.18040 * 6 5 4 8 8 C 1.46908 * 111.00109 * 174.16207 * 7 6 5 9 9 C 1.50704 * 109.46547 * 288.91534 * 8 7 6 10 10 C 1.37639 * 120.12272 * 104.32285 * 9 8 7 11 11 C 1.38619 * 120.24377 * 180.02562 * 10 9 8 12 12 C 1.38659 * 120.50145 * 0.02562 * 11 10 9 13 13 C 1.37598 * 120.24804 * 359.67647 * 12 11 10 14 14 C 1.40698 * 120.12839 * 284.33753 * 9 8 7 15 15 C 1.41393 * 120.24492 * 359.97438 * 14 9 8 16 16 H 1.08005 * 120.00063 * 328.70174 * 15 14 9 17 17 C 1.39943 * 120.00448 * 148.70278 * 15 14 9 18 18 N 1.30826 * 119.99535 * 334.70600 * 17 15 14 19 19 Si 1.86797 * 120.00500 * 154.70049 * 17 15 14 20 20 H 1.48497 * 109.46660 * 60.00164 * 19 17 15 21 21 H 1.48500 * 109.47273 * 300.00500 * 19 17 15 22 22 H 1.48499 * 109.47411 * 180.02562 * 19 17 15 23 23 C 1.46843 * 111.19762 * 298.25490 * 7 6 5 24 24 H 1.08995 * 109.47579 * 180.10294 * 1 2 3 25 25 H 1.09003 * 109.46780 * 300.10146 * 1 2 3 26 26 H 1.08997 * 109.46730 * 60.09793 * 1 2 3 27 27 H 0.96701 * 114.00178 * 59.90471 * 3 2 1 28 28 H 1.09004 * 109.52555 * 297.49595 * 4 2 1 29 29 H 1.08995 * 109.52488 * 57.68533 * 4 2 1 30 30 H 1.09002 * 109.50396 * 62.28678 * 5 4 2 31 31 H 1.09000 * 109.50218 * 182.36526 * 5 4 2 32 32 H 1.08998 * 109.46010 * 299.15994 * 6 5 4 33 33 H 1.09007 * 109.45940 * 179.19771 * 6 5 4 34 34 H 1.08999 * 109.47282 * 168.92074 * 8 7 6 35 35 H 1.08996 * 109.46900 * 48.91337 * 8 7 6 36 36 H 1.07994 * 119.88200 * 359.97438 * 10 9 8 37 37 H 1.07999 * 119.75123 * 180.02562 * 11 10 9 38 38 H 1.07997 * 119.87323 * 179.97438 * 12 11 10 39 39 H 1.07998 * 120.12774 * 180.29419 * 13 12 11 40 40 H 0.97005 * 120.00097 * 354.28563 * 18 17 15 41 41 H 1.09010 * 109.46316 * 181.75949 * 23 7 6 42 42 H 1.08995 * 109.46479 * 301.73566 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0079 1.3467 0.0000 4 6 2.0412 -0.7238 1.2487 5 6 3.5711 -0.7721 1.2108 6 6 4.0228 -1.4732 -0.0724 7 7 3.5092 -0.7423 -1.2378 8 6 4.0372 -1.3061 -2.4874 9 6 5.5019 -0.9733 -2.6092 10 6 6.4522 -1.9396 -2.3688 11 6 7.8002 -1.6361 -2.4795 12 6 8.2072 -0.3584 -2.8324 13 6 7.2746 0.6217 -3.0833 14 6 5.9033 0.3264 -2.9687 15 6 4.9361 1.3271 -3.2182 16 1 3.9739 1.0578 -3.6284 17 6 5.2254 2.6664 -2.9338 18 7 6.1172 2.9640 -2.0241 19 14 4.3382 4.0293 -3.8531 20 1 2.8771 3.9189 -3.6123 21 1 4.6110 3.9043 -5.3074 22 1 4.8217 5.3479 -3.3707 23 6 2.0410 -0.7236 -1.2480 24 1 -0.3634 -1.0276 0.0018 25 1 -0.3633 0.5154 0.8891 26 1 -0.3633 0.5123 -0.8909 27 1 1.7220 1.8655 0.7643 28 1 1.7157 -0.1870 2.1399 29 1 1.6451 -1.7391 1.2690 30 1 3.9678 0.2430 1.2298 31 1 3.9394 -1.3230 2.0762 32 1 3.6373 -2.4926 -0.0841 33 1 5.1120 -1.4965 -0.1093 34 1 3.4968 -0.8826 -3.3340 35 1 3.9099 -2.3886 -2.4798 36 1 6.1465 -2.9377 -2.0920 37 1 8.5390 -2.4005 -2.2895 38 1 9.2601 -0.1330 -2.9153 39 1 7.5937 1.6149 -3.3626 40 1 6.5175 2.2609 -1.4890 41 1 1.6905 -0.2023 -2.1390 42 1 1.6647 -1.7465 -1.2542 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235523209.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:50 Heat of formation + Delta-G solvation = -40.803764 kcal Electronic energy + Delta-G solvation = -22493.997637 eV Core-core repulsion = 19437.754485 eV Total energy + Delta-G solvation = -3056.243153 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.35823 -37.73112 -35.58743 -33.59908 -32.68348 -31.14138 -30.01306 -29.12212 -26.46746 -25.74489 -24.59742 -22.59012 -21.44516 -20.81640 -19.51212 -19.40558 -17.49217 -16.07396 -15.50614 -15.11927 -14.69715 -14.55016 -14.23627 -13.90574 -13.76500 -13.51963 -13.25539 -12.85598 -12.42307 -12.14876 -11.97294 -11.81403 -11.75031 -11.62508 -11.34443 -11.17767 -10.89908 -10.78259 -10.55943 -10.45825 -10.29806 -10.26920 -9.90574 -9.51556 -9.44727 -9.15787 -8.71088 -7.52717 -7.36961 -7.33895 -6.94241 -4.15456 2.87400 2.95523 3.29999 3.42306 3.48381 4.21761 4.41670 4.59404 4.82870 4.90802 5.04314 5.16032 5.34299 5.54364 5.61980 5.68404 5.77230 5.84459 5.88226 5.88401 6.00045 6.06938 6.10275 6.18094 6.21781 6.25918 6.35618 6.45492 6.49479 6.60473 6.71174 6.81679 7.07723 7.31771 7.59080 7.74578 7.80633 7.91036 8.02244 8.05599 8.08929 8.13900 8.43885 8.49827 8.98222 9.12928 10.32056 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.013764 B = 0.008628 C = 0.006058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.740909 B = 3244.642268 C = 4620.627847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.134 3.866 3 O -0.527 6.527 4 C -0.142 4.142 5 C -0.112 4.112 6 C 0.062 3.938 7 N -0.500 5.500 8 C 0.130 3.870 9 C -0.192 4.192 10 C -0.078 4.078 11 C -0.261 4.261 12 C -0.086 4.086 13 C -0.217 4.217 14 C 0.118 3.882 15 C -0.490 4.490 16 H 0.072 0.928 17 C 0.046 3.954 18 N -0.799 5.799 19 Si 1.059 2.941 20 H -0.276 1.276 21 H -0.279 1.279 22 H -0.278 1.278 23 C 0.074 3.926 24 H 0.060 0.940 25 H 0.056 0.944 26 H 0.064 0.936 27 H 0.361 0.639 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.079 0.921 31 H 0.056 0.944 32 H 0.014 0.986 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.011 0.989 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.099 0.901 40 H 0.297 0.703 41 H 0.077 0.923 42 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.221 -4.860 5.021 11.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.092 3.908 3 O -0.329 6.329 4 C -0.180 4.180 5 C -0.150 4.150 6 C -0.067 4.067 7 N -0.223 5.223 8 C 0.004 3.996 9 C -0.194 4.194 10 C -0.097 4.097 11 C -0.281 4.281 12 C -0.105 4.105 13 C -0.236 4.236 14 C 0.115 3.885 15 C -0.518 4.518 16 H 0.090 0.910 17 C -0.176 4.176 18 N -0.423 5.423 19 Si 0.884 3.116 20 H -0.202 1.202 21 H -0.205 1.205 22 H -0.203 1.203 23 C -0.055 4.055 24 H 0.079 0.921 25 H 0.075 0.925 26 H 0.083 0.917 27 H 0.206 0.794 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.097 0.903 31 H 0.075 0.925 32 H 0.032 0.968 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.029 0.971 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.117 0.883 40 H 0.110 0.890 41 H 0.095 0.905 42 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -8.840 -2.906 4.347 10.270 hybrid contribution -0.423 -2.479 0.816 2.643 sum -9.263 -5.384 5.162 11.893 Atomic orbital electron populations 1.22482 0.96478 1.02139 1.02398 1.21166 0.90987 0.83803 0.94822 1.86892 1.76417 1.21739 1.47898 1.22262 0.97472 1.00490 0.97817 1.21488 0.94416 1.02448 0.96601 1.22003 1.01026 0.93115 0.90512 1.61706 1.04887 1.53994 1.01761 1.20568 0.94251 0.93734 0.91026 1.19387 0.92334 0.95834 1.11822 1.20406 0.93268 0.96454 0.99524 1.20202 0.94626 0.96517 1.16747 1.20579 0.97043 0.93758 0.99110 1.21109 0.93459 0.98581 1.10443 1.17392 0.91855 0.91733 0.87564 1.20295 1.01191 0.92637 1.37634 0.91033 1.26741 0.95322 1.00250 0.95241 1.70403 1.19409 1.39883 1.12562 0.83736 0.76458 0.75275 0.76155 1.20200 1.20516 1.20261 1.21970 0.89653 0.96667 0.97199 0.92133 0.92478 0.91714 0.79447 0.92175 0.92063 0.90267 0.92517 0.96782 0.90234 0.91400 0.97074 0.90012 0.89802 0.89692 0.88316 0.88997 0.90482 0.95178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.03 8.82 37.16 0.33 -1.70 16 2 C 0.13 1.96 1.00 -90.54 -0.09 1.87 16 3 O -0.53 -9.07 12.31 -35.23 -0.43 -9.51 16 4 C -0.14 -1.89 4.99 -26.61 -0.13 -2.02 16 5 C -0.11 -1.76 5.94 -26.65 -0.16 -1.92 16 6 C 0.06 1.12 5.30 -3.84 -0.02 1.10 16 7 N -0.50 -9.98 4.43 -236.11 -1.05 -11.03 16 8 C 0.13 2.75 4.47 -4.97 -0.02 2.73 16 9 C -0.19 -4.59 4.71 -103.91 -0.49 -5.08 16 10 C -0.08 -1.76 8.94 -39.66 -0.35 -2.11 16 11 C -0.26 -5.98 10.05 -39.29 -0.39 -6.37 16 12 C -0.09 -2.06 10.02 -39.66 -0.40 -2.46 16 13 C -0.22 -5.66 8.06 -38.87 -0.31 -5.98 16 14 C 0.12 3.11 5.15 -106.83 -0.55 2.57 16 15 C -0.49 -13.05 8.24 -37.74 -0.31 -13.36 16 16 H 0.07 1.90 6.78 -52.48 -0.36 1.55 16 17 C 0.05 1.21 4.90 -17.34 -0.08 1.12 16 18 N -0.80 -22.02 12.55 55.55 0.70 -21.32 16 19 Si 1.06 22.84 30.00 -169.99 -5.10 17.74 16 20 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 21 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 22 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 23 C 0.07 1.25 4.42 -3.84 -0.02 1.23 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.36 4.63 9.05 45.56 0.41 5.05 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.08 1.45 7.80 -51.93 -0.40 1.04 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 33 H 0.08 1.62 6.75 -51.93 -0.35 1.27 16 34 H 0.07 1.47 6.74 -51.93 -0.35 1.12 16 35 H 0.01 0.22 7.88 -51.93 -0.41 -0.19 16 36 H 0.08 1.66 8.00 -52.49 -0.42 1.24 16 37 H 0.08 1.72 8.06 -52.49 -0.42 1.29 16 38 H 0.08 1.83 8.06 -52.49 -0.42 1.40 16 39 H 0.10 2.67 6.97 -52.49 -0.37 2.31 16 40 H 0.30 8.51 6.96 -40.82 -0.28 8.22 16 41 H 0.08 1.38 7.96 -51.92 -0.41 0.97 16 42 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 331.76 15.07 5.00 5.00 Total: -1.00 -29.23 331.76 -9.86 -39.09 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -5.96 Total: 10.42 kcal Atomic # 6 Polarization: -27.39 SS G_CDS: -3.01 Total: -30.40 kcal Atomic # 7 Polarization: -32.00 SS G_CDS: -0.35 Total: -32.34 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: -0.43 Total: -9.51 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.10 Total: 17.74 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.23 -9.86 -39.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235523209.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.714 kcal (2) G-P(sol) polarization free energy of solvation -29.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds