Wall clock time and date at job start Mon Mar 30 2020 01:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42893 * 109.53619 * 2 1 4 4 C 1.53119 * 109.49874 * 120.09915 * 2 1 3 5 5 C 1.53117 * 109.15846 * 177.59272 * 4 2 1 6 6 C 1.53038 * 109.27758 * 302.34471 * 5 4 2 7 7 N 1.46839 * 109.52327 * 59.18040 * 6 5 4 8 8 C 1.46908 * 111.00109 * 174.16207 * 7 6 5 9 9 C 1.50704 * 109.46547 * 288.91534 * 8 7 6 10 10 C 1.37639 * 120.12272 * 104.32285 * 9 8 7 11 11 C 1.38619 * 120.24377 * 180.02562 * 10 9 8 12 12 C 1.38659 * 120.50145 * 0.02562 * 11 10 9 13 13 C 1.37598 * 120.24804 * 359.67647 * 12 11 10 14 14 C 1.40698 * 120.12839 * 284.33753 * 9 8 7 15 15 C 1.41393 * 120.24492 * 359.97438 * 14 9 8 16 16 H 1.08005 * 120.00063 * 328.70174 * 15 14 9 17 17 C 1.39943 * 120.00448 * 148.70278 * 15 14 9 18 18 N 1.30826 * 119.99535 * 334.70600 * 17 15 14 19 19 Si 1.86797 * 120.00500 * 154.70049 * 17 15 14 20 20 H 1.48497 * 109.46660 * 60.00164 * 19 17 15 21 21 H 1.48500 * 109.47273 * 300.00500 * 19 17 15 22 22 H 1.48499 * 109.47411 * 180.02562 * 19 17 15 23 23 C 1.46843 * 111.19762 * 298.25490 * 7 6 5 24 24 H 1.08995 * 109.47579 * 180.10294 * 1 2 3 25 25 H 1.09003 * 109.46780 * 300.10146 * 1 2 3 26 26 H 1.08997 * 109.46730 * 60.09793 * 1 2 3 27 27 H 0.96701 * 114.00178 * 59.90471 * 3 2 1 28 28 H 1.09004 * 109.52555 * 297.49595 * 4 2 1 29 29 H 1.08995 * 109.52488 * 57.68533 * 4 2 1 30 30 H 1.09002 * 109.50396 * 62.28678 * 5 4 2 31 31 H 1.09000 * 109.50218 * 182.36526 * 5 4 2 32 32 H 1.08998 * 109.46010 * 299.15994 * 6 5 4 33 33 H 1.09007 * 109.45940 * 179.19771 * 6 5 4 34 34 H 1.08999 * 109.47282 * 168.92074 * 8 7 6 35 35 H 1.08996 * 109.46900 * 48.91337 * 8 7 6 36 36 H 1.07994 * 119.88200 * 359.97438 * 10 9 8 37 37 H 1.07999 * 119.75123 * 180.02562 * 11 10 9 38 38 H 1.07997 * 119.87323 * 179.97438 * 12 11 10 39 39 H 1.07998 * 120.12774 * 180.29419 * 13 12 11 40 40 H 0.97005 * 120.00097 * 354.28563 * 18 17 15 41 41 H 1.09010 * 109.46316 * 181.75949 * 23 7 6 42 42 H 1.08995 * 109.46479 * 301.73566 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0079 1.3467 0.0000 4 6 2.0412 -0.7238 1.2487 5 6 3.5711 -0.7721 1.2108 6 6 4.0228 -1.4732 -0.0724 7 7 3.5092 -0.7423 -1.2378 8 6 4.0372 -1.3061 -2.4874 9 6 5.5019 -0.9733 -2.6092 10 6 6.4522 -1.9396 -2.3688 11 6 7.8002 -1.6361 -2.4795 12 6 8.2072 -0.3584 -2.8324 13 6 7.2746 0.6217 -3.0833 14 6 5.9033 0.3264 -2.9687 15 6 4.9361 1.3271 -3.2182 16 1 3.9739 1.0578 -3.6284 17 6 5.2254 2.6664 -2.9338 18 7 6.1172 2.9640 -2.0241 19 14 4.3382 4.0293 -3.8531 20 1 2.8771 3.9189 -3.6123 21 1 4.6110 3.9043 -5.3074 22 1 4.8217 5.3479 -3.3707 23 6 2.0410 -0.7236 -1.2480 24 1 -0.3634 -1.0276 0.0018 25 1 -0.3633 0.5154 0.8891 26 1 -0.3633 0.5123 -0.8909 27 1 1.7220 1.8655 0.7643 28 1 1.7157 -0.1870 2.1399 29 1 1.6451 -1.7391 1.2690 30 1 3.9678 0.2430 1.2298 31 1 3.9394 -1.3230 2.0762 32 1 3.6373 -2.4926 -0.0841 33 1 5.1120 -1.4965 -0.1093 34 1 3.4968 -0.8826 -3.3340 35 1 3.9099 -2.3886 -2.4798 36 1 6.1465 -2.9377 -2.0920 37 1 8.5390 -2.4005 -2.2895 38 1 9.2601 -0.1330 -2.9153 39 1 7.5937 1.6149 -3.3626 40 1 6.5175 2.2609 -1.4890 41 1 1.6905 -0.2023 -2.1390 42 1 1.6647 -1.7465 -1.2542 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235523209.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:50 Heat of formation + Delta-G solvation = -59.452021 kcal Electronic energy + Delta-G solvation = -22494.806286 eV Core-core repulsion = 19437.754485 eV Total energy + Delta-G solvation = -3057.051802 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.70380 -39.50320 -37.02220 -35.55574 -34.07963 -32.32762 -31.70488 -31.06078 -27.70034 -27.32426 -26.45629 -23.99942 -22.90991 -22.63978 -21.29155 -20.67734 -19.43558 -17.31486 -16.89923 -16.74169 -16.37935 -16.19058 -15.69461 -15.50520 -15.36837 -14.95752 -14.70883 -14.16114 -14.00217 -13.72489 -13.61980 -13.44516 -13.00349 -12.87242 -12.79980 -12.71008 -12.56957 -12.45983 -12.08746 -11.96715 -11.87939 -11.75219 -11.45899 -11.19240 -10.97184 -10.67872 -10.58269 -9.38299 -9.32388 -8.97335 -8.87281 -6.19952 0.96561 1.03707 1.51487 1.67483 1.78247 2.41501 2.81823 3.10486 3.41096 3.74832 3.83494 3.87869 4.02335 4.16049 4.27756 4.33209 4.40039 4.47169 4.55411 4.60111 4.65728 4.67699 4.73801 4.76023 4.86774 4.95521 5.00573 5.01258 5.04483 5.12406 5.25214 5.35705 5.38245 5.44458 5.63007 5.85913 5.96873 6.02485 6.10357 6.34467 6.45543 6.49866 6.55595 6.99648 7.10266 7.14754 8.24448 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.013764 B = 0.008628 C = 0.006058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.740909 B = 3244.642268 C = 4620.627847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.129 3.871 3 O -0.564 6.564 4 C -0.133 4.133 5 C -0.108 4.108 6 C 0.063 3.937 7 N -0.526 5.526 8 C 0.136 3.864 9 C -0.193 4.193 10 C -0.083 4.083 11 C -0.252 4.252 12 C -0.095 4.095 13 C -0.240 4.240 14 C 0.091 3.909 15 C -0.512 4.512 16 H 0.061 0.939 17 C 0.009 3.991 18 N -0.825 5.825 19 Si 1.106 2.894 20 H -0.266 1.266 21 H -0.266 1.266 22 H -0.275 1.275 23 C 0.070 3.930 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.054 0.946 27 H 0.376 0.624 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.044 0.956 31 H 0.079 0.921 32 H 0.035 0.965 33 H 0.049 0.951 34 H 0.052 0.948 35 H 0.031 0.969 36 H 0.112 0.888 37 H 0.116 0.884 38 H 0.107 0.893 39 H 0.077 0.923 40 H 0.277 0.723 41 H 0.056 0.944 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.679 -6.669 6.035 13.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.088 3.912 3 O -0.370 6.370 4 C -0.171 4.171 5 C -0.146 4.146 6 C -0.065 4.065 7 N -0.250 5.250 8 C 0.009 3.991 9 C -0.194 4.194 10 C -0.102 4.102 11 C -0.271 4.271 12 C -0.114 4.114 13 C -0.259 4.259 14 C 0.088 3.912 15 C -0.541 4.541 16 H 0.080 0.920 17 C -0.206 4.206 18 N -0.449 5.449 19 Si 0.926 3.074 20 H -0.191 1.191 21 H -0.191 1.191 22 H -0.200 1.200 23 C -0.058 4.058 24 H 0.097 0.903 25 H 0.096 0.904 26 H 0.073 0.927 27 H 0.224 0.776 28 H 0.102 0.898 29 H 0.101 0.899 30 H 0.063 0.937 31 H 0.097 0.903 32 H 0.053 0.947 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.049 0.951 36 H 0.130 0.870 37 H 0.134 0.866 38 H 0.125 0.875 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.074 0.926 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.304 -4.734 5.370 12.547 hybrid contribution 0.118 -2.110 0.524 2.177 sum -10.186 -6.844 5.894 13.613 Atomic orbital electron populations 1.22378 0.93649 1.03501 1.02980 1.21315 0.92995 0.82626 0.94243 1.86841 1.77401 1.23393 1.49322 1.22210 0.95129 1.01817 0.97950 1.21445 0.96614 1.00372 0.96195 1.21987 0.99245 0.94351 0.90911 1.61580 1.06973 1.54875 1.01572 1.20448 0.92363 0.94731 0.91553 1.19811 0.94471 0.95088 1.10071 1.20763 0.93086 0.97567 0.98785 1.20649 0.95579 0.96574 1.14265 1.20868 0.97890 0.93879 0.98736 1.21086 0.94206 0.98387 1.12247 1.17724 0.92105 0.93097 0.88228 1.20291 1.01037 0.93431 1.39298 0.92048 1.27996 0.95178 1.02511 0.94910 1.70531 1.21570 1.38746 1.14004 0.83143 0.75877 0.72721 0.75699 1.19076 1.19053 1.20029 1.22079 0.87777 0.98064 0.97905 0.90321 0.90417 0.92684 0.77634 0.89827 0.89944 0.93742 0.90259 0.94715 0.93256 0.92930 0.95083 0.86961 0.86571 0.87477 0.90484 0.91140 0.92556 0.92899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.33 8.82 71.98 0.64 -2.70 16 2 C 0.13 3.54 1.00 -10.74 -0.01 3.53 16 3 O -0.56 -19.32 12.31 -148.98 -1.83 -21.15 16 4 C -0.13 -3.12 4.99 30.67 0.15 -2.96 16 5 C -0.11 -3.26 5.94 30.65 0.18 -3.08 16 6 C 0.06 2.21 5.30 86.33 0.46 2.67 16 7 N -0.53 -20.93 4.43 -900.92 -3.99 -24.92 16 8 C 0.14 5.72 4.47 85.56 0.38 6.10 16 9 C -0.19 -9.28 4.71 -19.40 -0.09 -9.37 16 10 C -0.08 -3.65 8.94 22.22 0.20 -3.45 16 11 C -0.25 -11.02 10.05 22.46 0.23 -10.79 16 12 C -0.10 -4.54 10.02 22.22 0.22 -4.32 16 13 C -0.24 -12.99 8.06 22.73 0.18 -12.80 16 14 C 0.09 5.00 5.15 -21.29 -0.11 4.89 16 15 C -0.51 -28.51 8.24 23.46 0.19 -28.31 16 16 H 0.06 3.44 6.78 -2.91 -0.02 3.42 16 17 C 0.01 0.51 4.90 85.26 0.42 0.92 16 18 N -0.82 -47.68 12.55 21.83 0.27 -47.40 16 19 Si 1.11 47.41 30.00 68.60 2.06 49.47 16 20 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 21 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 22 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 23 C 0.07 2.30 4.42 86.33 0.38 2.68 16 24 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.38 9.45 9.05 -74.06 -0.67 8.78 16 28 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.08 1.62 8.14 -2.39 -0.02 1.61 16 30 H 0.04 1.64 7.80 -2.39 -0.02 1.62 16 31 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.05 1.99 6.75 -2.38 -0.02 1.98 16 34 H 0.05 2.33 6.74 -2.39 -0.02 2.32 16 35 H 0.03 1.16 7.88 -2.39 -0.02 1.14 16 36 H 0.11 4.21 8.00 -2.91 -0.02 4.19 16 37 H 0.12 4.33 8.06 -2.91 -0.02 4.31 16 38 H 0.11 4.52 8.06 -2.91 -0.02 4.50 16 39 H 0.08 4.42 6.97 -2.91 -0.02 4.39 16 40 H 0.28 16.87 6.96 -92.70 -0.65 16.23 16 41 H 0.06 2.05 7.96 -2.38 -0.02 2.03 16 42 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -66.12 331.76 0.38 -65.74 By element: Atomic # 1 Polarization: 34.80 SS G_CDS: 0.45 Total: 35.26 kcal Atomic # 6 Polarization: -60.41 SS G_CDS: 3.42 Total: -56.99 kcal Atomic # 7 Polarization: -68.61 SS G_CDS: -3.71 Total: -72.32 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -1.83 Total: -21.15 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 2.06 Total: 49.47 kcal Total: -66.12 0.38 -65.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235523209.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.288 kcal (2) G-P(sol) polarization free energy of solvation -66.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds