Wall clock time and date at job start Mon Mar 30 2020 01:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46910 * 1 3 3 C 1.46899 * 110.99748 * 2 1 4 4 C 1.50691 * 109.47369 * 63.64063 * 3 2 1 5 5 C 1.37649 * 120.12756 * 261.24536 * 4 3 2 6 6 C 1.38610 * 120.25047 * 180.32176 * 5 4 3 7 7 C 1.38660 * 120.50011 * 359.67016 * 6 5 4 8 8 C 1.37602 * 120.24746 * 0.02562 * 7 6 5 9 9 C 1.40691 * 120.13320 * 80.94292 * 4 3 2 10 10 C 1.41404 * 120.24311 * 359.97438 * 9 4 3 11 11 H 1.07995 * 119.99439 * 335.13559 * 10 9 4 12 12 C 1.39942 * 120.00099 * 155.13777 * 10 9 4 13 13 N 1.30830 * 119.99679 * 333.98331 * 12 10 9 14 14 Si 1.86795 * 120.00031 * 153.98758 * 12 10 9 15 15 H 1.48503 * 109.47265 * 179.97438 * 14 12 10 16 16 H 1.48494 * 109.47133 * 299.99419 * 14 12 10 17 17 H 1.48494 * 109.47346 * 59.99774 * 14 12 10 18 18 C 1.46897 * 110.99997 * 236.04296 * 2 1 3 19 19 C 1.53005 * 109.47141 * 201.44909 * 18 2 1 20 20 C 1.53002 * 112.99754 * 56.08999 * 19 18 2 21 21 C 1.54035 * 113.81188 * 284.26712 * 19 18 2 22 22 O 1.44447 * 85.42239 * 223.23445 * 21 19 18 23 23 C 1.44180 * 93.38110 * 24.08904 * 22 21 19 24 24 H 1.09001 * 109.46905 * 64.58313 * 1 2 3 25 25 H 1.08998 * 109.47072 * 184.58195 * 1 2 3 26 26 H 1.08994 * 109.46942 * 304.58200 * 1 2 3 27 27 H 1.08992 * 109.46963 * 303.63351 * 3 2 1 28 28 H 1.09000 * 109.46359 * 183.63661 * 3 2 1 29 29 H 1.08001 * 119.87060 * 0.02562 * 5 4 3 30 30 H 1.07999 * 119.74847 * 179.69983 * 6 5 4 31 31 H 1.07996 * 119.87708 * 180.02562 * 7 6 5 32 32 H 1.07994 * 120.12363 * 180.02562 * 8 7 6 33 33 H 0.96994 * 120.00468 * 354.07965 * 13 12 10 34 34 H 1.09006 * 109.46863 * 321.44856 * 18 2 1 35 35 H 1.08996 * 109.46877 * 81.44420 * 18 2 1 36 36 H 1.09000 * 109.46976 * 66.79965 * 20 19 18 37 37 H 1.09001 * 109.46397 * 186.79732 * 20 19 18 38 38 H 1.08995 * 109.47173 * 306.79764 * 20 19 18 39 39 H 1.08995 * 113.86636 * 337.33668 * 21 19 18 40 40 H 1.09000 * 113.86409 * 109.04933 * 21 19 18 41 41 H 1.08993 * 113.86732 * 221.76892 * 23 22 21 42 42 H 1.09002 * 113.98262 * 90.07138 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.5866 2.0665 1.2730 5 6 0.5010 2.9128 1.2801 6 6 0.1267 3.5586 2.4480 7 6 0.8351 3.3555 3.6226 8 6 1.9198 2.5090 3.6403 9 6 2.3089 1.8480 2.4604 10 6 3.4216 0.9754 2.4668 11 1 3.4946 0.1882 1.7311 12 6 4.4280 1.1319 3.4265 13 7 4.6392 2.3041 3.9677 14 14 5.4699 -0.3329 3.9346 15 1 6.4582 0.0937 4.9576 16 1 4.5947 -1.3899 4.5019 17 1 6.1855 -0.8668 2.7481 18 6 1.9955 -0.7660 -1.1375 19 6 3.4318 -1.2008 -0.8387 20 6 3.5559 -2.0029 0.4583 21 6 4.4650 -0.0659 -0.9696 22 8 5.2826 -1.0449 -1.6476 23 6 4.1492 -1.8452 -2.0398 24 1 -0.3633 0.4411 -0.9282 25 1 -0.3633 -1.0244 0.0821 26 1 -0.3633 0.5833 0.8460 27 1 1.5943 1.9145 -0.8556 28 1 3.0832 1.3430 -0.0652 29 1 -0.0582 3.0780 0.3710 30 1 -0.7234 4.2247 2.4432 31 1 0.5343 3.8635 4.5269 32 1 2.4698 2.3519 4.5563 33 1 4.1584 3.0817 3.6436 34 1 1.3754 -1.6476 -1.3000 35 1 1.9830 -0.1432 -2.0319 36 1 3.0445 -2.9587 0.3447 37 1 4.6092 -2.1782 0.6775 38 1 3.1028 -1.4432 1.2764 39 1 4.1397 0.7552 -1.6083 40 1 4.8750 0.2692 -0.0169 41 1 4.3092 -2.9181 -1.9340 42 1 3.7257 -1.5703 -3.0058 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235523477.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:55 Heat of formation + Delta-G solvation = 5.937954 kcal Electronic energy + Delta-G solvation = -22610.698227 eV Core-core repulsion = 19556.481948 eV Total energy + Delta-G solvation = -3054.216280 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.50881 -38.19551 -36.27783 -33.85143 -32.03156 -30.42868 -29.17273 -27.08737 -26.59916 -25.84232 -25.35525 -24.67113 -21.61429 -20.89551 -19.60925 -18.58907 -17.66754 -16.06662 -15.85301 -15.71088 -15.00924 -14.61763 -14.39303 -14.34180 -13.88962 -13.58839 -13.16747 -12.96641 -12.54372 -12.21748 -12.04193 -11.78924 -11.66928 -11.57112 -11.35824 -11.22958 -11.12798 -10.99869 -10.70102 -10.48342 -10.36046 -10.06861 -9.92830 -9.58631 -9.36800 -9.25317 -8.87483 -7.78119 -7.53523 -7.49905 -7.07258 -4.36149 2.77186 2.85116 3.20132 3.31601 3.38490 3.95302 4.05287 4.25845 4.58674 4.73713 5.07211 5.30813 5.36878 5.47893 5.60836 5.62460 5.70870 5.76488 5.84554 5.91013 6.00961 6.11273 6.15998 6.21796 6.24348 6.30413 6.35412 6.37906 6.42841 6.46275 6.53393 6.78822 6.85771 6.99904 7.23561 7.46972 7.55593 7.62721 7.76118 7.89487 7.94651 8.03933 8.25857 8.38513 8.86931 8.98096 10.10253 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.013560 B = 0.009304 C = 0.006175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.406153 B = 3008.690026 C = 4533.018199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.523 5.523 3 C 0.118 3.882 4 C -0.199 4.199 5 C -0.074 4.074 6 C -0.261 4.261 7 C -0.085 4.085 8 C -0.222 4.222 9 C 0.117 3.883 10 C -0.513 4.513 11 H 0.099 0.901 12 C 0.040 3.960 13 N -0.798 5.798 14 Si 1.048 2.952 15 H -0.276 1.276 16 H -0.273 1.273 17 H -0.271 1.271 18 C 0.062 3.938 19 C -0.111 4.111 20 C -0.130 4.130 21 C 0.040 3.960 22 O -0.385 6.385 23 C 0.037 3.963 24 H 0.011 0.989 25 H 0.056 0.944 26 H 0.077 0.923 27 H 0.012 0.988 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.104 0.896 33 H 0.299 0.701 34 H 0.069 0.931 35 H 0.030 0.970 36 H 0.050 0.950 37 H 0.053 0.947 38 H 0.097 0.903 39 H 0.074 0.926 40 H 0.104 0.896 41 H 0.086 0.914 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.647 -6.261 -7.884 10.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.246 5.246 3 C -0.008 4.008 4 C -0.200 4.200 5 C -0.093 4.093 6 C -0.281 4.281 7 C -0.104 4.104 8 C -0.241 4.241 9 C 0.114 3.886 10 C -0.540 4.540 11 H 0.117 0.883 12 C -0.182 4.182 13 N -0.421 5.421 14 Si 0.872 3.128 15 H -0.201 1.201 16 H -0.198 1.198 17 H -0.197 1.197 18 C -0.067 4.067 19 C -0.112 4.112 20 C -0.187 4.187 21 C -0.036 4.036 22 O -0.303 6.303 23 C -0.041 4.041 24 H 0.030 0.970 25 H 0.075 0.925 26 H 0.096 0.904 27 H 0.030 0.970 28 H 0.100 0.900 29 H 0.100 0.900 30 H 0.102 0.898 31 H 0.103 0.897 32 H 0.122 0.878 33 H 0.113 0.887 34 H 0.088 0.912 35 H 0.048 0.952 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.115 0.885 39 H 0.092 0.908 40 H 0.122 0.878 41 H 0.104 0.896 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.976 -6.940 -6.441 9.519 hybrid contribution -1.912 1.084 -1.743 2.804 sum -2.888 -5.857 -8.184 10.470 Atomic orbital electron populations 1.22335 0.88141 1.01071 1.00331 1.61971 1.06997 1.14837 1.40772 1.20843 1.00049 0.85831 0.94048 1.19370 1.01763 1.04715 0.94182 1.20416 0.95876 0.97036 0.95982 1.20225 1.04440 1.09114 0.94292 1.20594 0.95792 0.97857 0.96126 1.21196 1.00321 1.04485 0.98108 1.17403 0.91936 0.89648 0.89602 1.20888 1.03923 1.14392 1.14837 0.88291 1.26910 0.97438 1.01308 0.92561 1.70446 1.34922 1.00690 1.36053 0.83881 0.76405 0.74742 0.77771 1.20100 1.19842 1.19656 1.22113 0.95043 0.97582 0.91940 1.23540 0.94769 0.96138 0.96707 1.21635 1.01584 0.98886 0.96556 1.24321 0.89642 0.91868 0.97761 1.89682 1.27219 1.38665 1.74778 1.24039 0.86106 0.97009 0.96907 0.97025 0.92550 0.90435 0.96997 0.89967 0.89996 0.89766 0.89650 0.87847 0.88727 0.91236 0.95170 0.93060 0.92792 0.88479 0.90791 0.87753 0.89569 0.90940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 9.23 60.07 0.55 1.03 16 2 N -0.52 -9.06 3.73 -244.37 -0.91 -9.97 16 3 C 0.12 2.29 3.99 -4.98 -0.02 2.27 16 4 C -0.20 -4.45 4.59 -103.92 -0.48 -4.93 16 5 C -0.07 -1.60 8.46 -39.66 -0.34 -1.94 16 6 C -0.26 -5.74 10.05 -39.29 -0.39 -6.14 16 7 C -0.08 -1.96 10.02 -39.66 -0.40 -2.36 16 8 C -0.22 -5.55 7.96 -38.87 -0.31 -5.86 16 9 C 0.12 2.91 5.31 -106.82 -0.57 2.34 16 10 C -0.51 -12.48 8.12 -37.74 -0.31 -12.78 16 11 H 0.10 2.27 3.46 -52.49 -0.18 2.09 16 12 C 0.04 0.97 4.93 -17.34 -0.09 0.89 16 13 N -0.80 -20.62 12.29 55.55 0.68 -19.94 16 14 Si 1.05 21.37 30.00 -169.99 -5.10 16.27 16 15 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 16 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 17 H -0.27 -5.26 7.11 56.52 0.40 -4.85 16 18 C 0.06 0.89 4.54 -3.82 -0.02 0.88 16 19 C -0.11 -1.65 1.10 -153.43 -0.17 -1.82 16 20 C -0.13 -2.06 8.59 37.16 0.32 -1.74 16 21 C 0.04 0.66 6.04 37.64 0.23 0.89 16 22 O -0.38 -6.43 12.38 -35.23 -0.44 -6.87 16 23 C 0.04 0.49 8.37 37.64 0.31 0.80 16 24 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 25 H 0.06 0.81 8.08 -51.93 -0.42 0.39 16 26 H 0.08 1.41 6.25 -51.93 -0.32 1.09 16 27 H 0.01 0.22 8.01 -51.93 -0.42 -0.20 16 28 H 0.08 1.64 3.84 -51.93 -0.20 1.44 16 29 H 0.08 1.59 8.04 -52.49 -0.42 1.17 16 30 H 0.08 1.67 8.06 -52.49 -0.42 1.24 16 31 H 0.09 1.78 8.06 -52.49 -0.42 1.35 16 32 H 0.10 2.70 6.45 -52.49 -0.34 2.36 16 33 H 0.30 7.95 6.70 -40.82 -0.27 7.68 16 34 H 0.07 0.90 7.87 -51.93 -0.41 0.49 16 35 H 0.03 0.42 7.94 -51.93 -0.41 0.01 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.05 0.87 8.07 -51.93 -0.42 0.45 16 38 H 0.10 1.80 5.34 -51.93 -0.28 1.53 16 39 H 0.07 1.15 7.49 -51.93 -0.39 0.76 16 40 H 0.10 1.94 7.26 -51.93 -0.38 1.57 16 41 H 0.09 1.00 8.10 -51.93 -0.42 0.58 16 42 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 LS Contribution 324.45 15.07 4.89 4.89 Total: -1.00 -26.08 324.45 -8.73 -34.81 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -6.19 Total: 9.28 kcal Atomic # 6 Polarization: -26.80 SS G_CDS: -1.67 Total: -28.46 kcal Atomic # 7 Polarization: -29.68 SS G_CDS: -0.23 Total: -29.91 kcal Atomic # 8 Polarization: -6.43 SS G_CDS: -0.44 Total: -6.87 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.10 Total: 16.27 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -26.08 -8.73 -34.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235523477.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.747 kcal (2) G-P(sol) polarization free energy of solvation -26.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds