Wall clock time and date at job start Mon Mar 30 2020 01:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46910 * 1 3 3 C 1.46899 * 110.99748 * 2 1 4 4 C 1.50691 * 109.47369 * 63.64063 * 3 2 1 5 5 C 1.37649 * 120.12756 * 261.24536 * 4 3 2 6 6 C 1.38610 * 120.25047 * 180.32176 * 5 4 3 7 7 C 1.38660 * 120.50011 * 359.67016 * 6 5 4 8 8 C 1.37602 * 120.24746 * 0.02562 * 7 6 5 9 9 C 1.40691 * 120.13320 * 80.94292 * 4 3 2 10 10 C 1.41404 * 120.24311 * 359.97438 * 9 4 3 11 11 H 1.07995 * 119.99439 * 335.13559 * 10 9 4 12 12 C 1.39942 * 120.00099 * 155.13777 * 10 9 4 13 13 N 1.30830 * 119.99679 * 333.98331 * 12 10 9 14 14 Si 1.86795 * 120.00031 * 153.98758 * 12 10 9 15 15 H 1.48503 * 109.47265 * 179.97438 * 14 12 10 16 16 H 1.48494 * 109.47133 * 299.99419 * 14 12 10 17 17 H 1.48494 * 109.47346 * 59.99774 * 14 12 10 18 18 C 1.46897 * 110.99997 * 236.04296 * 2 1 3 19 19 C 1.53005 * 109.47141 * 201.44909 * 18 2 1 20 20 C 1.53002 * 112.99754 * 56.08999 * 19 18 2 21 21 C 1.54035 * 113.81188 * 284.26712 * 19 18 2 22 22 O 1.44447 * 85.42239 * 223.23445 * 21 19 18 23 23 C 1.44180 * 93.38110 * 24.08904 * 22 21 19 24 24 H 1.09001 * 109.46905 * 64.58313 * 1 2 3 25 25 H 1.08998 * 109.47072 * 184.58195 * 1 2 3 26 26 H 1.08994 * 109.46942 * 304.58200 * 1 2 3 27 27 H 1.08992 * 109.46963 * 303.63351 * 3 2 1 28 28 H 1.09000 * 109.46359 * 183.63661 * 3 2 1 29 29 H 1.08001 * 119.87060 * 0.02562 * 5 4 3 30 30 H 1.07999 * 119.74847 * 179.69983 * 6 5 4 31 31 H 1.07996 * 119.87708 * 180.02562 * 7 6 5 32 32 H 1.07994 * 120.12363 * 180.02562 * 8 7 6 33 33 H 0.96994 * 120.00468 * 354.07965 * 13 12 10 34 34 H 1.09006 * 109.46863 * 321.44856 * 18 2 1 35 35 H 1.08996 * 109.46877 * 81.44420 * 18 2 1 36 36 H 1.09000 * 109.46976 * 66.79965 * 20 19 18 37 37 H 1.09001 * 109.46397 * 186.79732 * 20 19 18 38 38 H 1.08995 * 109.47173 * 306.79764 * 20 19 18 39 39 H 1.08995 * 113.86636 * 337.33668 * 21 19 18 40 40 H 1.09000 * 113.86409 * 109.04933 * 21 19 18 41 41 H 1.08993 * 113.86732 * 221.76892 * 23 22 21 42 42 H 1.09002 * 113.98262 * 90.07138 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.5866 2.0665 1.2730 5 6 0.5010 2.9128 1.2801 6 6 0.1267 3.5586 2.4480 7 6 0.8351 3.3555 3.6226 8 6 1.9198 2.5090 3.6403 9 6 2.3089 1.8480 2.4604 10 6 3.4216 0.9754 2.4668 11 1 3.4946 0.1882 1.7311 12 6 4.4280 1.1319 3.4265 13 7 4.6392 2.3041 3.9677 14 14 5.4699 -0.3329 3.9346 15 1 6.4582 0.0937 4.9576 16 1 4.5947 -1.3899 4.5019 17 1 6.1855 -0.8668 2.7481 18 6 1.9955 -0.7660 -1.1375 19 6 3.4318 -1.2008 -0.8387 20 6 3.5559 -2.0029 0.4583 21 6 4.4650 -0.0659 -0.9696 22 8 5.2826 -1.0449 -1.6476 23 6 4.1492 -1.8452 -2.0398 24 1 -0.3633 0.4411 -0.9282 25 1 -0.3633 -1.0244 0.0821 26 1 -0.3633 0.5833 0.8460 27 1 1.5943 1.9145 -0.8556 28 1 3.0832 1.3430 -0.0652 29 1 -0.0582 3.0780 0.3710 30 1 -0.7234 4.2247 2.4432 31 1 0.5343 3.8635 4.5269 32 1 2.4698 2.3519 4.5563 33 1 4.1584 3.0817 3.6436 34 1 1.3754 -1.6476 -1.3000 35 1 1.9830 -0.1432 -2.0319 36 1 3.0445 -2.9587 0.3447 37 1 4.6092 -2.1782 0.6775 38 1 3.1028 -1.4432 1.2764 39 1 4.1397 0.7552 -1.6083 40 1 4.8750 0.2692 -0.0169 41 1 4.3092 -2.9181 -1.9340 42 1 3.7257 -1.5703 -3.0058 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235523477.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:55 Heat of formation + Delta-G solvation = -7.975687 kcal Electronic energy + Delta-G solvation = -22611.301568 eV Core-core repulsion = 19556.481948 eV Total energy + Delta-G solvation = -3054.819620 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.71224 -39.86915 -37.71434 -35.67064 -33.35977 -32.03950 -30.98107 -28.39143 -27.82834 -27.35579 -26.71270 -26.21171 -23.05667 -22.71075 -21.27809 -19.75931 -19.47070 -17.37939 -17.06192 -16.95650 -16.62107 -16.16512 -16.01037 -15.78343 -15.48024 -15.06958 -14.48696 -14.40412 -14.01965 -13.83980 -13.45140 -13.30298 -13.14760 -12.91417 -12.85376 -12.72186 -12.55312 -12.40367 -12.23847 -12.11081 -11.97775 -11.42805 -11.27362 -11.15146 -11.00557 -10.70322 -10.51456 -9.39614 -9.35561 -9.06702 -8.89641 -6.24372 0.98291 1.04313 1.50816 1.65538 1.75458 2.35182 2.74360 2.81935 3.04814 3.44952 3.78819 3.92823 4.14042 4.26580 4.29218 4.31235 4.39456 4.46676 4.52145 4.60653 4.63307 4.68547 4.76706 4.77939 4.88043 5.00264 5.03457 5.06990 5.11847 5.13684 5.18055 5.27772 5.31820 5.41464 5.52835 5.67586 5.87606 5.99048 6.11057 6.19275 6.31612 6.39191 6.43357 6.56741 7.02126 7.15556 8.17788 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.013560 B = 0.009304 C = 0.006175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.406153 B = 3008.690026 C = 4533.018199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.538 5.538 3 C 0.125 3.875 4 C -0.197 4.197 5 C -0.079 4.079 6 C -0.259 4.259 7 C -0.095 4.095 8 C -0.249 4.249 9 C 0.092 3.908 10 C -0.529 4.529 11 H 0.111 0.889 12 C 0.006 3.994 13 N -0.826 5.826 14 Si 1.088 2.912 15 H -0.280 1.280 16 H -0.263 1.263 17 H -0.256 1.256 18 C 0.066 3.934 19 C -0.109 4.109 20 C -0.127 4.127 21 C 0.037 3.963 22 O -0.408 6.408 23 C 0.047 3.953 24 H 0.028 0.972 25 H 0.075 0.925 26 H 0.050 0.950 27 H 0.024 0.976 28 H 0.072 0.928 29 H 0.109 0.891 30 H 0.111 0.889 31 H 0.102 0.898 32 H 0.080 0.920 33 H 0.283 0.717 34 H 0.094 0.906 35 H 0.043 0.957 36 H 0.074 0.926 37 H 0.043 0.957 38 H 0.067 0.933 39 H 0.081 0.919 40 H 0.073 0.927 41 H 0.106 0.894 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.974 -7.774 -10.192 13.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.261 5.261 3 C -0.001 4.001 4 C -0.199 4.199 5 C -0.098 4.098 6 C -0.278 4.278 7 C -0.114 4.114 8 C -0.269 4.269 9 C 0.089 3.911 10 C -0.557 4.557 11 H 0.128 0.872 12 C -0.210 4.210 13 N -0.451 5.451 14 Si 0.907 3.093 15 H -0.205 1.205 16 H -0.188 1.188 17 H -0.180 1.180 18 C -0.062 4.062 19 C -0.110 4.110 20 C -0.184 4.184 21 C -0.040 4.040 22 O -0.328 6.328 23 C -0.030 4.030 24 H 0.047 0.953 25 H 0.094 0.906 26 H 0.069 0.931 27 H 0.042 0.958 28 H 0.090 0.910 29 H 0.127 0.873 30 H 0.129 0.871 31 H 0.120 0.880 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.112 0.888 35 H 0.061 0.939 36 H 0.093 0.907 37 H 0.062 0.938 38 H 0.085 0.915 39 H 0.099 0.901 40 H 0.091 0.909 41 H 0.124 0.876 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.321 -8.460 -8.762 12.399 hybrid contribution -1.627 1.595 -1.097 2.529 sum -3.948 -6.864 -9.859 12.645 Atomic orbital electron populations 1.22298 0.87235 1.01992 0.99977 1.61843 1.07896 1.13586 1.42797 1.20702 0.99578 0.87169 0.92699 1.19768 1.01141 1.04265 0.94680 1.20739 0.95719 0.96366 0.97000 1.20603 1.04597 1.08734 0.93840 1.20838 0.95368 0.97594 0.97566 1.21173 1.01522 1.06462 0.97715 1.17740 0.92805 0.90129 0.90448 1.21105 1.04021 1.14992 1.15571 0.87183 1.28009 0.98283 1.02396 0.92354 1.70546 1.36094 1.00896 1.37516 0.83385 0.75383 0.72563 0.77932 1.20503 1.18752 1.18021 1.22160 0.94748 0.98177 0.91139 1.23507 0.94905 0.95410 0.97191 1.21555 1.00923 0.99738 0.96151 1.24231 0.90387 0.92728 0.96627 1.89661 1.28910 1.39224 1.75000 1.24250 0.84062 0.97720 0.96981 0.95345 0.90638 0.93074 0.95826 0.91007 0.87255 0.87094 0.88010 0.90154 0.90481 0.88812 0.93913 0.90685 0.93763 0.91462 0.90086 0.90898 0.87595 0.88428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.96 9.23 127.69 1.18 2.14 16 2 N -0.54 -17.45 3.73 -927.06 -3.46 -20.91 16 3 C 0.13 4.67 3.99 85.55 0.34 5.01 16 4 C -0.20 -8.74 4.59 -19.41 -0.09 -8.83 16 5 C -0.08 -3.30 8.46 22.22 0.19 -3.11 16 6 C -0.26 -10.99 10.05 22.46 0.23 -10.76 16 7 C -0.10 -4.41 10.02 22.22 0.22 -4.18 16 8 C -0.25 -12.93 7.96 22.73 0.18 -12.75 16 9 C 0.09 4.67 5.31 -21.29 -0.11 4.55 16 10 C -0.53 -26.55 8.12 23.46 0.19 -26.36 16 11 H 0.11 5.16 3.46 -2.91 -0.01 5.15 16 12 C 0.01 0.30 4.93 85.25 0.42 0.72 16 13 N -0.83 -44.91 12.29 21.83 0.27 -44.65 16 14 Si 1.09 44.22 30.00 68.60 2.06 46.28 16 15 H -0.28 -11.45 7.11 99.48 0.71 -10.75 16 16 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 17 H -0.26 -9.65 7.11 99.48 0.71 -8.95 16 18 C 0.07 1.67 4.54 86.31 0.39 2.06 16 19 C -0.11 -3.00 1.10 -51.48 -0.06 -3.05 16 20 C -0.13 -3.81 8.59 71.98 0.62 -3.19 16 21 C 0.04 1.18 6.04 72.30 0.44 1.62 16 22 O -0.41 -12.99 12.38 -148.98 -1.85 -14.84 16 23 C 0.05 1.06 8.37 72.30 0.60 1.67 16 24 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.07 1.90 8.08 -2.39 -0.02 1.88 16 26 H 0.05 1.76 6.25 -2.39 -0.01 1.75 16 27 H 0.02 0.82 8.01 -2.39 -0.02 0.80 16 28 H 0.07 2.84 3.84 -2.39 -0.01 2.83 16 29 H 0.11 3.91 8.04 -2.91 -0.02 3.89 16 30 H 0.11 4.08 8.06 -2.91 -0.02 4.06 16 31 H 0.10 4.24 8.06 -2.91 -0.02 4.22 16 32 H 0.08 4.45 6.45 -2.91 -0.02 4.43 16 33 H 0.28 16.01 6.70 -92.71 -0.62 15.39 16 34 H 0.09 1.97 7.87 -2.38 -0.02 1.96 16 35 H 0.04 1.01 7.94 -2.39 -0.02 0.99 16 36 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.04 1.38 8.07 -2.39 -0.02 1.36 16 38 H 0.07 2.45 5.34 -2.39 -0.01 2.44 16 39 H 0.08 2.44 7.49 -2.39 -0.02 2.43 16 40 H 0.07 2.79 7.26 -2.39 -0.02 2.78 16 41 H 0.11 2.01 8.10 -2.39 -0.02 1.99 16 42 H 0.10 1.76 8.10 -2.39 -0.02 1.75 16 Total: -1.00 -58.00 324.45 2.92 -55.08 By element: Atomic # 1 Polarization: 32.34 SS G_CDS: 1.16 Total: 33.49 kcal Atomic # 6 Polarization: -59.21 SS G_CDS: 4.74 Total: -54.46 kcal Atomic # 7 Polarization: -62.36 SS G_CDS: -3.19 Total: -65.55 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: -1.85 Total: -14.84 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.06 Total: 46.28 kcal Total: -58.00 2.92 -55.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235523477.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.109 kcal (2) G-P(sol) polarization free energy of solvation -58.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds