Wall clock time and date at job start Mon Mar 30 2020 01:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52994 * 109.54337 * 2 1 4 4 C 1.53102 * 109.50707 * 239.89173 * 2 1 3 5 5 O 1.43017 * 109.25964 * 296.91326 * 4 2 1 6 6 C 1.43018 * 113.73631 * 301.33195 * 5 4 2 7 7 C 1.53096 * 109.26035 * 58.66536 * 6 5 4 8 8 N 1.47008 * 109.26102 * 303.15494 * 7 6 5 9 9 C 1.46896 * 111.00185 * 182.39442 * 8 7 6 10 10 C 1.50707 * 109.47392 * 46.35931 * 9 8 7 11 11 C 1.37643 * 120.12639 * 260.31268 * 10 9 8 12 12 C 1.38615 * 120.24281 * 180.31829 * 11 10 9 13 13 C 1.38658 * 120.50051 * 359.66907 * 12 11 10 14 14 C 1.37593 * 120.25264 * 0.02562 * 13 12 11 15 15 C 1.40688 * 120.12508 * 80.00027 * 10 9 8 16 16 C 1.41401 * 120.24844 * 359.97438 * 15 10 9 17 17 H 1.08005 * 119.99206 * 334.30257 * 16 15 10 18 18 C 1.39936 * 120.00319 * 154.30692 * 16 15 10 19 19 N 1.30824 * 119.99946 * 334.59921 * 18 16 15 20 20 Si 1.86800 * 119.99991 * 154.60526 * 18 16 15 21 21 H 1.48502 * 109.47023 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47274 * 299.99375 * 20 18 16 23 23 H 1.48494 * 109.47182 * 60.00087 * 20 18 16 24 24 H 1.09002 * 109.47162 * 299.88868 * 1 2 3 25 25 H 1.09005 * 109.47306 * 59.89414 * 1 2 3 26 26 H 1.08999 * 109.47315 * 179.89114 * 1 2 3 27 27 H 1.09007 * 109.47851 * 180.10982 * 3 2 1 28 28 H 1.09002 * 109.47181 * 300.10833 * 3 2 1 29 29 H 1.08995 * 109.47488 * 60.10890 * 3 2 1 30 30 H 1.08995 * 109.50590 * 56.84681 * 4 2 1 31 31 H 1.09000 * 109.50918 * 176.97721 * 4 2 1 32 32 H 1.09002 * 109.50239 * 178.60477 * 6 5 4 33 33 H 1.09000 * 109.50462 * 298.68876 * 6 5 4 34 34 H 1.08996 * 109.50357 * 183.21246 * 7 6 5 35 35 H 1.09004 * 109.50330 * 63.08843 * 7 6 5 36 36 H 1.09004 * 109.47201 * 286.36529 * 9 8 7 37 37 H 1.08997 * 109.47572 * 166.35946 * 9 8 7 38 38 H 1.07998 * 119.87840 * 0.02562 * 11 10 9 39 39 H 1.07996 * 119.74749 * 179.68975 * 12 11 10 40 40 H 1.08000 * 119.87393 * 180.02562 * 13 12 11 41 41 H 1.07996 * 120.12941 * 180.02562 * 14 13 12 42 42 H 0.96995 * 120.00229 * 354.17910 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0417 1.4418 0.0000 4 6 2.0412 -0.7239 -1.2484 5 8 1.6226 -2.0908 -1.2057 6 6 2.0837 -2.7983 -0.0514 7 6 1.5729 -2.0953 1.2091 8 7 2.0208 -0.6952 1.1987 9 6 1.5990 0.0016 2.4212 10 6 1.9032 -0.8590 3.6204 11 6 0.9061 -1.6058 4.2057 12 6 1.1817 -2.3930 5.3128 13 6 2.4636 -2.4432 5.8390 14 6 3.4773 -1.7099 5.2664 15 6 3.2090 -0.9071 4.1420 16 6 4.2429 -0.1497 3.5447 17 1 4.1780 0.1248 2.5021 18 6 5.3502 0.2440 4.3043 19 7 5.2414 0.3717 5.6017 20 14 6.9837 0.5875 3.4657 21 1 7.9888 0.9854 4.4839 22 1 7.4470 -0.6365 2.7641 23 1 6.8138 1.6873 2.4825 24 1 -0.3633 0.5121 0.8910 25 1 -0.3634 0.5155 -0.8891 26 1 -0.3634 -1.0276 -0.0020 27 1 3.1318 1.4406 -0.0020 28 1 1.6774 1.9567 -0.8890 29 1 1.6807 1.9556 0.8909 30 1 1.6331 -0.2460 -2.1390 31 1 3.1298 -0.6773 -1.2761 32 1 1.7063 -3.8206 -0.0764 33 1 3.1736 -2.8126 -0.0446 34 1 1.9689 -2.5977 2.0916 35 1 0.4836 -2.1288 1.2284 36 1 0.5275 0.1969 2.3767 37 1 2.1372 0.9456 2.5056 38 1 -0.0958 -1.5746 3.8037 39 1 0.3922 -2.9719 5.7687 40 1 2.6672 -3.0603 6.7016 41 1 4.4750 -1.7508 5.6776 42 1 4.3752 0.2763 6.0275 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235523625.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:20 Heat of formation + Delta-G solvation = -27.141983 kcal Electronic energy + Delta-G solvation = -22665.654110 eV Core-core repulsion = 19610.003376 eV Total energy + Delta-G solvation = -3055.650733 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.01117 -37.84280 -35.77682 -33.86755 -32.95614 -30.51900 -29.20681 -27.87838 -27.14491 -26.53578 -25.11275 -23.45854 -22.19301 -20.91438 -19.87664 -18.31499 -17.63100 -16.21157 -15.95809 -15.31369 -14.90846 -14.73292 -14.52359 -14.07314 -13.90994 -13.41858 -13.37367 -13.06099 -12.46559 -12.24534 -12.07215 -11.90912 -11.65719 -11.63750 -11.52600 -11.17317 -10.95197 -10.91467 -10.81108 -10.71425 -10.39692 -10.29030 -10.10423 -9.60323 -9.30903 -9.22186 -8.92112 -7.74281 -7.55728 -7.49893 -7.09138 -4.37578 2.73827 2.82451 3.18272 3.30336 3.38736 4.04634 4.08966 4.33153 4.62179 4.95950 5.18858 5.24102 5.38107 5.53734 5.57310 5.60697 5.74577 5.77489 5.85120 5.86811 6.01269 6.07624 6.10111 6.10349 6.15466 6.17770 6.32553 6.36795 6.43686 6.54636 6.57308 6.80681 6.98087 7.19949 7.36083 7.43855 7.57263 7.64171 7.75411 7.87575 7.91955 8.00146 8.23840 8.35887 8.84609 8.95736 10.08999 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.015141 B = 0.007816 C = 0.006084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.894522 B = 3581.592599 C = 4601.504846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.068 3.932 3 C -0.138 4.138 4 C 0.077 3.923 5 O -0.390 6.390 6 C 0.063 3.937 7 C 0.023 3.977 8 N -0.509 5.509 9 C 0.124 3.876 10 C -0.205 4.205 11 C -0.073 4.073 12 C -0.261 4.261 13 C -0.084 4.084 14 C -0.222 4.222 15 C 0.115 3.885 16 C -0.503 4.503 17 H 0.090 0.910 18 C 0.037 3.963 19 N -0.799 5.799 20 Si 1.061 2.939 21 H -0.277 1.277 22 H -0.275 1.275 23 H -0.276 1.276 24 H 0.057 0.943 25 H 0.054 0.946 26 H 0.060 0.940 27 H 0.066 0.934 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.089 0.911 31 H 0.057 0.943 32 H 0.090 0.910 33 H 0.058 0.942 34 H 0.096 0.904 35 H 0.034 0.966 36 H 0.020 0.980 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.103 0.897 42 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.372 -0.122 -9.385 10.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.023 4.023 3 C -0.195 4.195 4 C 0.000 4.000 5 O -0.308 6.308 6 C -0.014 4.014 7 C -0.105 4.105 8 N -0.234 5.234 9 C -0.002 4.002 10 C -0.206 4.206 11 C -0.092 4.092 12 C -0.280 4.280 13 C -0.103 4.103 14 C -0.241 4.241 15 C 0.111 3.889 16 C -0.531 4.531 17 H 0.108 0.892 18 C -0.185 4.185 19 N -0.422 5.422 20 Si 0.885 3.115 21 H -0.202 1.202 22 H -0.201 1.201 23 H -0.202 1.202 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.107 0.893 31 H 0.075 0.925 32 H 0.108 0.892 33 H 0.076 0.924 34 H 0.114 0.886 35 H 0.052 0.948 36 H 0.038 0.962 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.103 0.897 40 H 0.104 0.896 41 H 0.121 0.879 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.377 0.230 -9.197 9.502 hybrid contribution -2.466 -0.404 0.199 2.506 sum -4.842 -0.174 -8.998 10.220 Atomic orbital electron populations 1.22367 0.97059 1.02285 1.01623 1.21709 0.92982 0.95153 0.92418 1.21795 1.02179 0.93989 1.01548 1.22632 0.99094 0.81840 0.96413 1.87896 1.76236 1.23057 1.43651 1.22706 0.99176 0.95029 0.84482 1.22721 0.97928 0.90611 0.99229 1.62546 1.58486 1.01214 1.01105 1.20715 0.95880 0.97032 0.86572 1.19419 0.93714 1.06053 1.01457 1.20425 0.96441 0.96486 0.95892 1.20233 0.96394 1.09024 1.02377 1.20598 0.93645 0.98169 0.97903 1.21195 0.97987 1.02814 1.02101 1.17417 0.91034 0.90139 0.90262 1.20705 1.02782 1.29563 1.00069 0.89166 1.26994 1.04236 0.92359 0.94870 1.70451 1.30820 1.29834 1.11134 0.83688 0.74167 0.77743 0.75859 1.20172 1.20063 1.20156 0.92414 0.92675 0.92062 0.91496 0.92743 0.91997 0.89337 0.92468 0.89225 0.92379 0.88588 0.94807 0.96204 0.90357 0.89982 0.89683 0.89572 0.87853 0.88788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.48 7.70 37.15 0.29 -2.19 16 2 C 0.07 1.02 0.68 -131.50 -0.09 0.93 16 3 C -0.14 -1.92 8.18 37.15 0.30 -1.61 16 4 C 0.08 1.10 5.70 37.21 0.21 1.31 16 5 O -0.39 -6.12 10.28 -35.23 -0.36 -6.48 16 6 C 0.06 0.98 7.01 37.21 0.26 1.24 16 7 C 0.02 0.41 4.50 -3.72 -0.02 0.39 16 8 N -0.51 -9.22 4.36 -220.11 -0.96 -10.18 16 9 C 0.12 2.46 3.66 -4.97 -0.02 2.44 16 10 C -0.20 -4.64 3.79 -103.91 -0.39 -5.03 16 11 C -0.07 -1.60 8.67 -39.66 -0.34 -1.94 16 12 C -0.26 -5.74 10.05 -39.29 -0.39 -6.13 16 13 C -0.08 -1.94 10.02 -39.66 -0.40 -2.34 16 14 C -0.22 -5.57 7.95 -38.87 -0.31 -5.88 16 15 C 0.11 2.88 5.30 -106.82 -0.57 2.32 16 16 C -0.50 -12.69 8.12 -37.74 -0.31 -13.00 16 17 H 0.09 2.26 6.91 -52.48 -0.36 1.89 16 18 C 0.04 0.92 4.94 -17.35 -0.09 0.83 16 19 N -0.80 -20.88 12.31 55.55 0.68 -20.19 16 20 Si 1.06 21.52 30.00 -169.99 -5.10 16.42 16 21 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 22 H -0.28 -5.46 7.11 56.52 0.40 -5.05 16 23 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 24 H 0.06 0.84 6.26 -51.93 -0.33 0.52 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.93 6.07 -51.93 -0.31 0.61 16 27 H 0.07 0.98 8.14 -51.92 -0.42 0.56 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.91 6.60 -51.93 -0.34 0.56 16 30 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.10 1.94 6.27 -51.93 -0.33 1.61 16 35 H 0.03 0.59 6.39 -51.93 -0.33 0.26 16 36 H 0.02 0.38 5.79 -51.93 -0.30 0.08 16 37 H 0.08 1.65 6.07 -51.93 -0.32 1.34 16 38 H 0.08 1.62 8.03 -52.49 -0.42 1.20 16 39 H 0.08 1.69 8.06 -52.49 -0.42 1.26 16 40 H 0.09 1.79 8.06 -52.49 -0.42 1.36 16 41 H 0.10 2.71 6.49 -52.49 -0.34 2.36 16 42 H 0.30 8.03 6.68 -40.82 -0.27 7.76 16 LS Contribution 319.21 15.07 4.81 4.81 Total: -1.00 -26.23 319.21 -9.04 -35.27 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -6.25 Total: 9.01 kcal Atomic # 6 Polarization: -26.79 SS G_CDS: -1.86 Total: -28.65 kcal Atomic # 7 Polarization: -30.10 SS G_CDS: -0.28 Total: -30.37 kcal Atomic # 8 Polarization: -6.12 SS G_CDS: -0.36 Total: -6.48 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.10 Total: 16.42 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -26.23 -9.04 -35.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235523625.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.133 kcal (2) G-P(sol) polarization free energy of solvation -26.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds