Wall clock time and date at job start Mon Mar 30 2020 01:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52994 * 109.54337 * 2 1 4 4 C 1.53102 * 109.50707 * 239.89173 * 2 1 3 5 5 O 1.43017 * 109.25964 * 296.91326 * 4 2 1 6 6 C 1.43018 * 113.73631 * 301.33195 * 5 4 2 7 7 C 1.53096 * 109.26035 * 58.66536 * 6 5 4 8 8 N 1.47008 * 109.26102 * 303.15494 * 7 6 5 9 9 C 1.46896 * 111.00185 * 182.39442 * 8 7 6 10 10 C 1.50707 * 109.47392 * 46.35931 * 9 8 7 11 11 C 1.37643 * 120.12639 * 260.31268 * 10 9 8 12 12 C 1.38615 * 120.24281 * 180.31829 * 11 10 9 13 13 C 1.38658 * 120.50051 * 359.66907 * 12 11 10 14 14 C 1.37593 * 120.25264 * 0.02562 * 13 12 11 15 15 C 1.40688 * 120.12508 * 80.00027 * 10 9 8 16 16 C 1.41401 * 120.24844 * 359.97438 * 15 10 9 17 17 H 1.08005 * 119.99206 * 334.30257 * 16 15 10 18 18 C 1.39936 * 120.00319 * 154.30692 * 16 15 10 19 19 N 1.30824 * 119.99946 * 334.59921 * 18 16 15 20 20 Si 1.86800 * 119.99991 * 154.60526 * 18 16 15 21 21 H 1.48502 * 109.47023 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47274 * 299.99375 * 20 18 16 23 23 H 1.48494 * 109.47182 * 60.00087 * 20 18 16 24 24 H 1.09002 * 109.47162 * 299.88868 * 1 2 3 25 25 H 1.09005 * 109.47306 * 59.89414 * 1 2 3 26 26 H 1.08999 * 109.47315 * 179.89114 * 1 2 3 27 27 H 1.09007 * 109.47851 * 180.10982 * 3 2 1 28 28 H 1.09002 * 109.47181 * 300.10833 * 3 2 1 29 29 H 1.08995 * 109.47488 * 60.10890 * 3 2 1 30 30 H 1.08995 * 109.50590 * 56.84681 * 4 2 1 31 31 H 1.09000 * 109.50918 * 176.97721 * 4 2 1 32 32 H 1.09002 * 109.50239 * 178.60477 * 6 5 4 33 33 H 1.09000 * 109.50462 * 298.68876 * 6 5 4 34 34 H 1.08996 * 109.50357 * 183.21246 * 7 6 5 35 35 H 1.09004 * 109.50330 * 63.08843 * 7 6 5 36 36 H 1.09004 * 109.47201 * 286.36529 * 9 8 7 37 37 H 1.08997 * 109.47572 * 166.35946 * 9 8 7 38 38 H 1.07998 * 119.87840 * 0.02562 * 11 10 9 39 39 H 1.07996 * 119.74749 * 179.68975 * 12 11 10 40 40 H 1.08000 * 119.87393 * 180.02562 * 13 12 11 41 41 H 1.07996 * 120.12941 * 180.02562 * 14 13 12 42 42 H 0.96995 * 120.00229 * 354.17910 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0417 1.4418 0.0000 4 6 2.0412 -0.7239 -1.2484 5 8 1.6226 -2.0908 -1.2057 6 6 2.0837 -2.7983 -0.0514 7 6 1.5729 -2.0953 1.2091 8 7 2.0208 -0.6952 1.1987 9 6 1.5990 0.0016 2.4212 10 6 1.9032 -0.8590 3.6204 11 6 0.9061 -1.6058 4.2057 12 6 1.1817 -2.3930 5.3128 13 6 2.4636 -2.4432 5.8390 14 6 3.4773 -1.7099 5.2664 15 6 3.2090 -0.9071 4.1420 16 6 4.2429 -0.1497 3.5447 17 1 4.1780 0.1248 2.5021 18 6 5.3502 0.2440 4.3043 19 7 5.2414 0.3717 5.6017 20 14 6.9837 0.5875 3.4657 21 1 7.9888 0.9854 4.4839 22 1 7.4470 -0.6365 2.7641 23 1 6.8138 1.6873 2.4825 24 1 -0.3633 0.5121 0.8910 25 1 -0.3634 0.5155 -0.8891 26 1 -0.3634 -1.0276 -0.0020 27 1 3.1318 1.4406 -0.0020 28 1 1.6774 1.9567 -0.8890 29 1 1.6807 1.9556 0.8909 30 1 1.6331 -0.2460 -2.1390 31 1 3.1298 -0.6773 -1.2761 32 1 1.7063 -3.8206 -0.0764 33 1 3.1736 -2.8126 -0.0446 34 1 1.9689 -2.5977 2.0916 35 1 0.4836 -2.1288 1.2284 36 1 0.5275 0.1969 2.3767 37 1 2.1372 0.9456 2.5056 38 1 -0.0958 -1.5746 3.8037 39 1 0.3922 -2.9719 5.7687 40 1 2.6672 -3.0603 6.7016 41 1 4.4750 -1.7508 5.6776 42 1 4.3752 0.2763 6.0275 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235523625.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:20 Heat of formation + Delta-G solvation = -41.436570 kcal Electronic energy + Delta-G solvation = -22666.273970 eV Core-core repulsion = 19610.003376 eV Total energy + Delta-G solvation = -3056.270593 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.34371 -39.56741 -37.10477 -35.71265 -34.32571 -32.13545 -31.05581 -29.33151 -28.27181 -27.79940 -26.93594 -24.99694 -23.50060 -22.75252 -21.60627 -19.74199 -19.34381 -17.49151 -17.28122 -16.75242 -16.50634 -16.33623 -15.90364 -15.72033 -15.43191 -14.92476 -14.79354 -14.39132 -14.11720 -13.85594 -13.61276 -13.44114 -13.13663 -12.89367 -12.78881 -12.72501 -12.53521 -12.35295 -12.13734 -12.11634 -11.99031 -11.91157 -11.41801 -11.29820 -11.09274 -10.77802 -10.48511 -9.45255 -9.41147 -9.12743 -8.92549 -6.31177 0.91818 0.99419 1.51670 1.66230 1.79475 2.35740 2.71872 2.89659 3.03576 3.67182 3.81320 3.99620 4.04245 4.09476 4.21874 4.29353 4.33327 4.42123 4.51144 4.59058 4.63408 4.68397 4.74455 4.79127 4.86268 4.90419 4.93122 4.96055 5.04602 5.06706 5.16220 5.25025 5.36139 5.40933 5.56832 5.81640 5.91933 6.03130 6.08331 6.15538 6.22281 6.33442 6.39299 6.50092 6.95369 7.07796 8.13322 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.015141 B = 0.007816 C = 0.006084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.894522 B = 3581.592599 C = 4601.504846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.064 3.936 3 C -0.134 4.134 4 C 0.076 3.924 5 O -0.393 6.393 6 C 0.068 3.932 7 C 0.030 3.970 8 N -0.523 5.523 9 C 0.135 3.865 10 C -0.202 4.202 11 C -0.079 4.079 12 C -0.254 4.254 13 C -0.093 4.093 14 C -0.246 4.246 15 C 0.091 3.909 16 C -0.525 4.525 17 H 0.086 0.914 18 C 0.002 3.998 19 N -0.824 5.824 20 Si 1.108 2.892 21 H -0.277 1.277 22 H -0.268 1.268 23 H -0.257 1.257 24 H 0.049 0.951 25 H 0.079 0.921 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.085 0.915 29 H 0.049 0.951 30 H 0.119 0.881 31 H 0.052 0.948 32 H 0.111 0.889 33 H 0.049 0.951 34 H 0.065 0.935 35 H 0.037 0.963 36 H 0.031 0.969 37 H 0.060 0.940 38 H 0.107 0.893 39 H 0.114 0.886 40 H 0.106 0.894 41 H 0.082 0.918 42 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.625 -0.173 -11.376 12.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.026 4.026 3 C -0.192 4.192 4 C -0.001 4.001 5 O -0.311 6.311 6 C -0.009 4.009 7 C -0.098 4.098 8 N -0.248 5.248 9 C 0.009 3.991 10 C -0.204 4.204 11 C -0.098 4.098 12 C -0.273 4.273 13 C -0.111 4.111 14 C -0.266 4.266 15 C 0.088 3.912 16 C -0.553 4.553 17 H 0.104 0.896 18 C -0.214 4.214 19 N -0.448 5.448 20 Si 0.927 3.073 21 H -0.202 1.202 22 H -0.193 1.193 23 H -0.181 1.181 24 H 0.068 0.932 25 H 0.098 0.902 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.104 0.896 29 H 0.068 0.932 30 H 0.137 0.863 31 H 0.070 0.930 32 H 0.129 0.871 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.055 0.945 36 H 0.049 0.951 37 H 0.079 0.921 38 H 0.125 0.875 39 H 0.132 0.868 40 H 0.124 0.876 41 H 0.100 0.900 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.652 0.176 -11.198 11.780 hybrid contribution -2.241 -0.452 0.812 2.426 sum -5.893 -0.276 -10.386 11.945 Atomic orbital electron populations 1.22287 0.95926 1.01897 1.02463 1.21877 0.93873 0.95527 0.91319 1.21778 1.01395 0.93472 1.02516 1.22791 0.99045 0.81249 0.97004 1.87898 1.76225 1.23755 1.43259 1.22676 0.98661 0.95900 0.83627 1.22602 0.97865 0.90281 0.99066 1.62456 1.59289 1.01617 1.01456 1.20508 0.96144 0.95810 0.86628 1.19775 0.93031 1.05642 1.01930 1.20718 0.97343 0.95960 0.95744 1.20624 0.96521 1.08292 1.01877 1.20856 0.93743 0.98016 0.98487 1.21171 0.97795 1.04416 1.03178 1.17718 0.92251 0.90487 0.90714 1.20760 1.03885 1.30763 0.99901 0.89611 1.28230 1.07128 0.91299 0.94728 1.70564 1.29705 1.32560 1.11995 0.83106 0.70533 0.78381 0.75312 1.20216 1.19344 1.18141 0.93176 0.90202 0.92979 0.92730 0.89575 0.93195 0.86285 0.93014 0.87089 0.93283 0.91612 0.94508 0.95082 0.92144 0.87533 0.86817 0.87602 0.89987 0.90591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.26 7.70 71.98 0.55 -3.71 16 2 C 0.06 1.79 0.68 3.54 0.00 1.80 16 3 C -0.13 -3.49 8.18 71.98 0.59 -2.90 16 4 C 0.08 1.95 5.70 72.02 0.41 2.36 16 5 O -0.39 -11.32 10.28 -148.98 -1.53 -12.85 16 6 C 0.07 2.02 7.01 72.01 0.50 2.53 16 7 C 0.03 1.03 4.50 86.31 0.39 1.42 16 8 N -0.52 -18.57 4.36 -850.31 -3.71 -22.28 16 9 C 0.14 5.34 3.66 85.56 0.31 5.66 16 10 C -0.20 -9.19 3.79 -19.40 -0.07 -9.26 16 11 C -0.08 -3.33 8.67 22.22 0.19 -3.13 16 12 C -0.25 -10.77 10.05 22.46 0.23 -10.54 16 13 C -0.09 -4.25 10.02 22.22 0.22 -4.03 16 14 C -0.25 -12.77 7.95 22.73 0.18 -12.59 16 15 C 0.09 4.72 5.30 -21.29 -0.11 4.60 16 16 C -0.52 -27.33 8.12 23.46 0.19 -27.14 16 17 H 0.09 4.42 6.91 -2.91 -0.02 4.40 16 18 C 0.00 0.10 4.94 85.25 0.42 0.52 16 19 N -0.82 -44.86 12.31 21.82 0.27 -44.59 16 20 Si 1.11 44.01 30.00 68.60 2.06 46.07 16 21 H -0.28 -10.94 7.11 99.48 0.71 -10.23 16 22 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 23 H -0.26 -9.34 7.11 99.48 0.71 -8.63 16 24 H 0.05 1.35 6.26 -2.39 -0.01 1.33 16 25 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 26 H 0.05 1.43 6.07 -2.39 -0.01 1.41 16 27 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 28 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.05 1.41 6.60 -2.39 -0.02 1.39 16 30 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.11 2.78 8.14 -2.39 -0.02 2.76 16 33 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.07 2.65 6.27 -2.39 -0.01 2.63 16 35 H 0.04 1.23 6.39 -2.38 -0.02 1.21 16 36 H 0.03 1.14 5.79 -2.39 -0.01 1.13 16 37 H 0.06 2.60 6.07 -2.39 -0.01 2.58 16 38 H 0.11 3.95 8.03 -2.91 -0.02 3.93 16 39 H 0.11 4.15 8.06 -2.91 -0.02 4.13 16 40 H 0.11 4.33 8.06 -2.91 -0.02 4.31 16 41 H 0.08 4.53 6.49 -2.91 -0.02 4.51 16 42 H 0.28 16.00 6.68 -92.71 -0.62 15.38 16 Total: -1.00 -57.59 319.21 2.25 -55.35 By element: Atomic # 1 Polarization: 31.57 SS G_CDS: 1.15 Total: 32.72 kcal Atomic # 6 Polarization: -58.42 SS G_CDS: 4.01 Total: -54.41 kcal Atomic # 7 Polarization: -63.43 SS G_CDS: -3.44 Total: -66.87 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: -1.53 Total: -12.85 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.06 Total: 46.07 kcal Total: -57.59 2.25 -55.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235523625.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.910 kcal (2) G-P(sol) polarization free energy of solvation -57.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds