Wall clock time and date at job start Mon Mar 30 2020 02:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00482 * 2 1 3 5 5 C 1.38284 * 119.97382 * 59.99447 * 4 2 1 6 6 C 1.38237 * 120.11254 * 179.97438 * 5 4 2 7 7 C 1.38167 * 120.05523 * 0.05082 * 6 5 4 8 8 C 1.50708 * 120.02704 * 179.97438 * 7 6 5 9 9 N 1.46901 * 109.46710 * 260.00030 * 8 7 6 10 10 C 1.47484 * 110.99693 * 265.97013 * 9 8 7 11 11 C 1.53520 * 87.93000 * 221.30067 * 10 9 8 12 12 C 1.50701 * 114.34282 * 139.68486 * 11 10 9 13 13 H 1.08000 * 120.00225 * 266.07386 * 12 11 10 14 14 C 1.37878 * 120.00095 * 86.07043 * 12 11 10 15 15 N 1.31509 * 120.00097 * 179.97438 * 14 12 11 16 16 Si 1.86801 * 119.99952 * 0.02562 * 14 12 11 17 17 H 1.48494 * 109.47394 * 89.99095 * 16 14 12 18 18 H 1.48500 * 109.46960 * 209.99789 * 16 14 12 19 19 H 1.48501 * 109.46870 * 329.99411 * 16 14 12 20 20 C 1.47481 * 110.99780 * 170.00057 * 9 8 7 21 21 C 1.38708 * 119.94663 * 359.97336 * 7 6 5 22 22 O 1.35892 * 120.05523 * 179.97438 * 21 7 6 23 23 C 1.38123 * 119.96862 * 239.72566 * 4 2 1 24 24 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 27 27 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 28 28 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 29 29 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 31 31 H 1.08000 * 119.94448 * 359.97438 * 5 4 2 32 32 H 1.08005 * 119.97177 * 180.02562 * 6 5 4 33 33 H 1.09003 * 109.47129 * 19.99906 * 8 7 6 34 34 H 1.08993 * 109.47140 * 139.99558 * 8 7 6 35 35 H 1.08997 * 113.47576 * 336.06021 * 10 9 8 36 36 H 1.08993 * 113.47788 * 106.53594 * 10 9 8 37 37 H 1.09000 * 114.16611 * 272.37489 * 11 10 9 38 38 H 0.97003 * 120.00215 * 180.02562 * 15 14 12 39 39 H 1.08994 * 113.47993 * 253.47106 * 20 9 8 40 40 H 1.09008 * 113.47548 * 23.87261 * 20 9 8 41 41 H 0.96702 * 114.00524 * 90.00278 * 22 21 7 42 42 H 1.07995 * 120.02867 * 359.97438 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2306 5 6 1.6979 -0.2374 -2.4862 6 6 2.1576 -0.8864 -3.6169 7 6 2.9518 -2.0103 -3.4949 8 6 3.4521 -2.7178 -4.7280 9 7 2.6143 -3.8955 -4.9906 10 6 3.1998 -5.1062 -4.3853 11 6 2.8142 -5.8642 -5.6634 12 6 3.8522 -6.8475 -6.1395 13 1 4.5831 -6.5470 -6.8757 14 6 3.8689 -8.1306 -5.6353 15 7 4.7745 -8.9888 -6.0513 16 14 2.6044 -8.6506 -4.3625 17 1 1.4086 -9.2017 -5.0491 18 1 3.1905 -9.6897 -3.4783 19 1 2.2090 -7.4734 -3.5482 20 6 2.9186 -4.4766 -6.3115 21 6 3.2884 -2.4871 -2.2365 22 8 4.0690 -3.5927 -2.1139 23 6 2.8311 -1.8300 -1.1032 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.0765 0.6405 -2.5837 32 1 1.8953 -0.5148 -4.5965 33 1 3.4039 -2.0401 -5.5804 34 1 4.4838 -3.0331 -4.5725 35 1 4.2764 -5.0368 -4.2298 36 1 2.6665 -5.4499 -3.4990 37 1 1.8050 -6.2761 -5.6506 38 1 4.7860 -9.8917 -5.6968 39 1 2.1472 -4.2867 -7.0577 40 1 3.9199 -4.2382 -6.6705 41 1 5.0166 -3.4032 -2.0784 42 1 3.0959 -2.1961 -0.1223 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237046178.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:23 Heat of formation + Delta-G solvation = 4.091537 kcal Electronic energy + Delta-G solvation = -21215.407602 eV Core-core repulsion = 18161.111256 eV Total energy + Delta-G solvation = -3054.296346 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.18609 -38.80301 -37.20114 -35.05762 -32.69810 -31.48483 -29.95770 -28.33798 -27.36067 -25.65450 -24.89975 -23.14260 -22.59175 -21.30511 -20.10226 -18.57577 -17.61407 -16.99751 -16.18214 -15.95015 -15.31127 -14.93971 -14.46307 -14.16696 -14.04424 -13.70260 -13.59524 -13.44569 -13.27866 -12.59822 -12.52223 -12.18860 -11.99478 -11.81666 -11.63404 -11.42909 -11.31696 -11.23819 -10.95401 -10.85938 -10.33900 -10.13389 -9.88928 -9.82191 -9.52899 -9.05401 -8.69963 -8.50465 -8.31614 -8.03300 -6.06280 -4.05993 1.33585 1.40390 3.35089 3.43061 3.51872 3.66384 4.26049 4.48068 4.58743 4.66735 4.90737 4.96376 4.99634 5.12296 5.20130 5.25063 5.31177 5.39067 5.40928 5.59383 5.61086 5.67007 5.74069 5.81153 5.93033 5.98962 6.02356 6.06750 6.11557 6.20516 6.42829 6.45449 6.50594 6.57314 6.58819 6.68170 6.90879 6.98409 7.11531 7.43226 7.74308 7.84034 7.95775 8.53349 8.96259 9.57598 11.06226 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.029192 B = 0.004090 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.947939 B = 6844.650299 C = 7206.198596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.055 4.055 3 C -0.143 4.143 4 C -0.071 4.071 5 C -0.127 4.127 6 C -0.092 4.092 7 C -0.090 4.090 8 C 0.063 3.937 9 N -0.478 5.478 10 C 0.010 3.990 11 C -0.005 4.005 12 C -0.509 4.509 13 H 0.073 0.927 14 C 0.074 3.926 15 N -0.901 5.901 16 Si 0.874 3.126 17 H -0.278 1.278 18 H -0.289 1.289 19 H -0.255 1.255 20 C 0.008 3.992 21 C 0.120 3.880 22 O -0.486 6.486 23 C -0.147 4.147 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.075 0.925 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.119 0.881 32 H 0.123 0.877 33 H 0.070 0.930 34 H 0.050 0.950 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.054 0.946 38 H 0.264 0.736 39 H 0.065 0.935 40 H 0.059 0.941 41 H 0.384 0.616 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.416 20.242 11.199 23.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.074 4.074 3 C -0.200 4.200 4 C -0.071 4.071 5 C -0.145 4.145 6 C -0.110 4.110 7 C -0.091 4.091 8 C -0.066 4.066 9 N -0.200 5.200 10 C -0.119 4.119 11 C -0.025 4.025 12 C -0.547 4.547 13 H 0.091 0.909 14 C -0.128 4.128 15 N -0.539 5.539 16 Si 0.701 3.299 17 H -0.204 1.204 18 H -0.216 1.216 19 H -0.179 1.179 20 C -0.121 4.121 21 C 0.075 3.925 22 O -0.296 6.296 23 C -0.165 4.165 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.094 0.906 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.137 0.863 32 H 0.141 0.859 33 H 0.088 0.912 34 H 0.068 0.932 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.239 0.761 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.545 20.000 11.382 23.670 hybrid contribution 0.770 -0.368 0.520 0.999 sum -4.775 19.632 11.902 23.449 Atomic orbital electron populations 1.21857 0.94323 1.02205 1.01759 1.20104 0.95992 0.95897 0.95385 1.21851 1.01180 0.95170 1.01808 1.19621 0.97505 0.95314 0.94664 1.20872 1.01254 1.00567 0.91804 1.20896 0.96592 0.94956 0.98577 1.20191 0.99255 0.95204 0.94477 1.21463 0.95968 0.95001 0.94120 1.68917 1.42939 1.01202 1.06958 1.24262 0.97982 0.89984 0.99639 1.20560 0.97576 0.92067 0.92249 1.20913 1.13954 0.94993 1.24814 0.90903 1.24990 0.95402 0.96309 0.96099 1.69911 1.34862 1.05454 1.43651 0.86885 0.81825 0.78960 0.82185 1.20393 1.21554 1.17935 1.23805 0.99171 0.97054 0.92070 1.18324 0.95694 0.87030 0.91495 1.84977 1.20578 1.28364 1.95642 1.21265 1.01047 0.95904 0.98289 0.92526 0.92406 0.92396 0.90637 0.92524 0.92588 0.92415 0.86290 0.85917 0.91177 0.93159 0.91713 0.91993 0.92840 0.92670 0.91687 0.92224 0.76054 0.85918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.01 37.16 0.33 -0.88 16 2 C -0.06 -0.50 3.09 -91.77 -0.28 -0.78 16 3 C -0.14 -1.08 9.01 37.16 0.33 -0.75 16 4 C -0.07 -0.82 4.78 -104.64 -0.50 -1.32 16 5 C -0.13 -1.48 8.71 -39.56 -0.34 -1.82 16 6 C -0.09 -1.21 9.66 -39.61 -0.38 -1.59 16 7 C -0.09 -1.37 5.48 -104.47 -0.57 -1.94 16 8 C 0.06 1.04 4.71 -4.97 -0.02 1.01 16 9 N -0.48 -9.53 6.32 -246.06 -1.55 -11.09 16 10 C 0.01 0.23 5.14 -7.53 -0.04 0.19 16 11 C -0.01 -0.12 2.95 -91.24 -0.27 -0.39 16 12 C -0.51 -14.32 9.38 -34.44 -0.32 -14.65 16 13 H 0.07 2.20 8.06 -52.49 -0.42 1.78 16 14 C 0.07 2.14 5.47 -17.82 -0.10 2.05 16 15 N -0.90 -27.60 13.96 55.43 0.77 -26.82 16 16 Si 0.87 21.96 27.14 -169.99 -4.61 17.35 16 17 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 18 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 19 H -0.26 -6.26 5.68 56.52 0.32 -5.94 16 20 C 0.01 0.16 7.25 -7.54 -0.05 0.10 16 21 C 0.12 1.79 6.67 -39.22 -0.26 1.53 16 22 O -0.49 -7.39 10.87 -19.40 -0.21 -7.60 16 23 C -0.15 -1.91 9.61 -39.43 -0.38 -2.29 16 24 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.47 7.39 -51.93 -0.38 0.09 16 27 H 0.08 0.66 7.87 -51.93 -0.41 0.25 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.42 7.39 -51.93 -0.38 0.04 16 31 H 0.12 1.13 7.10 -52.49 -0.37 0.75 16 32 H 0.12 1.43 8.04 -52.48 -0.42 1.01 16 33 H 0.07 1.04 7.94 -51.93 -0.41 0.63 16 34 H 0.05 0.83 7.01 -51.93 -0.36 0.47 16 35 H 0.06 1.46 7.09 -51.93 -0.37 1.09 16 36 H 0.06 1.47 7.11 -51.93 -0.37 1.10 16 37 H 0.05 1.33 7.04 -51.93 -0.37 0.96 16 38 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 39 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 40 H 0.06 1.22 7.87 -51.92 -0.41 0.81 16 41 H 0.38 4.06 9.06 45.56 0.41 4.48 16 42 H 0.12 1.44 7.94 -52.49 -0.42 1.02 16 LS Contribution 335.01 15.07 5.05 5.05 Total: -1.00 -31.89 335.01 -9.43 -41.32 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -6.01 Total: 3.33 kcal Atomic # 6 Polarization: -18.67 SS G_CDS: -2.86 Total: -21.54 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: -0.78 Total: -37.91 kcal Atomic # 8 Polarization: -7.39 SS G_CDS: -0.21 Total: -7.60 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.61 Total: 17.35 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.89 -9.43 -41.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237046178.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.411 kcal (2) G-P(sol) polarization free energy of solvation -31.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds