Wall clock time and date at job start Mon Mar 30 2020 02:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00482 * 2 1 3 5 5 C 1.38284 * 119.97382 * 59.99447 * 4 2 1 6 6 C 1.38237 * 120.11254 * 179.97438 * 5 4 2 7 7 C 1.38167 * 120.05523 * 0.05082 * 6 5 4 8 8 C 1.50708 * 120.02704 * 179.97438 * 7 6 5 9 9 N 1.46901 * 109.46710 * 260.00030 * 8 7 6 10 10 C 1.47484 * 110.99693 * 265.97013 * 9 8 7 11 11 C 1.53520 * 87.93000 * 221.30067 * 10 9 8 12 12 C 1.50701 * 114.34282 * 139.68486 * 11 10 9 13 13 H 1.08000 * 120.00225 * 266.07386 * 12 11 10 14 14 C 1.37878 * 120.00095 * 86.07043 * 12 11 10 15 15 N 1.31509 * 120.00097 * 179.97438 * 14 12 11 16 16 Si 1.86801 * 119.99952 * 0.02562 * 14 12 11 17 17 H 1.48494 * 109.47394 * 89.99095 * 16 14 12 18 18 H 1.48500 * 109.46960 * 209.99789 * 16 14 12 19 19 H 1.48501 * 109.46870 * 329.99411 * 16 14 12 20 20 C 1.47481 * 110.99780 * 170.00057 * 9 8 7 21 21 C 1.38708 * 119.94663 * 359.97336 * 7 6 5 22 22 O 1.35892 * 120.05523 * 179.97438 * 21 7 6 23 23 C 1.38123 * 119.96862 * 239.72566 * 4 2 1 24 24 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 27 27 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 28 28 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 29 29 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 31 31 H 1.08000 * 119.94448 * 359.97438 * 5 4 2 32 32 H 1.08005 * 119.97177 * 180.02562 * 6 5 4 33 33 H 1.09003 * 109.47129 * 19.99906 * 8 7 6 34 34 H 1.08993 * 109.47140 * 139.99558 * 8 7 6 35 35 H 1.08997 * 113.47576 * 336.06021 * 10 9 8 36 36 H 1.08993 * 113.47788 * 106.53594 * 10 9 8 37 37 H 1.09000 * 114.16611 * 272.37489 * 11 10 9 38 38 H 0.97003 * 120.00215 * 180.02562 * 15 14 12 39 39 H 1.08994 * 113.47993 * 253.47106 * 20 9 8 40 40 H 1.09008 * 113.47548 * 23.87261 * 20 9 8 41 41 H 0.96702 * 114.00524 * 90.00278 * 22 21 7 42 42 H 1.07995 * 120.02867 * 359.97438 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2306 5 6 1.6979 -0.2374 -2.4862 6 6 2.1576 -0.8864 -3.6169 7 6 2.9518 -2.0103 -3.4949 8 6 3.4521 -2.7178 -4.7280 9 7 2.6143 -3.8955 -4.9906 10 6 3.1998 -5.1062 -4.3853 11 6 2.8142 -5.8642 -5.6634 12 6 3.8522 -6.8475 -6.1395 13 1 4.5831 -6.5470 -6.8757 14 6 3.8689 -8.1306 -5.6353 15 7 4.7745 -8.9888 -6.0513 16 14 2.6044 -8.6506 -4.3625 17 1 1.4086 -9.2017 -5.0491 18 1 3.1905 -9.6897 -3.4783 19 1 2.2090 -7.4734 -3.5482 20 6 2.9186 -4.4766 -6.3115 21 6 3.2884 -2.4871 -2.2365 22 8 4.0690 -3.5927 -2.1139 23 6 2.8311 -1.8300 -1.1032 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.0765 0.6405 -2.5837 32 1 1.8953 -0.5148 -4.5965 33 1 3.4039 -2.0401 -5.5804 34 1 4.4838 -3.0331 -4.5725 35 1 4.2764 -5.0368 -4.2298 36 1 2.6665 -5.4499 -3.4990 37 1 1.8050 -6.2761 -5.6506 38 1 4.7860 -9.8917 -5.6968 39 1 2.1472 -4.2867 -7.0577 40 1 3.9199 -4.2382 -6.6705 41 1 5.0166 -3.4032 -2.0784 42 1 3.0959 -2.1961 -0.1223 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237046178.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:22 Heat of formation + Delta-G solvation = -18.002621 kcal Electronic energy + Delta-G solvation = -21216.365677 eV Core-core repulsion = 18161.111256 eV Total energy + Delta-G solvation = -3055.254421 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.36809 -40.28573 -38.19815 -35.99989 -34.74147 -32.82612 -31.03882 -29.82449 -27.95331 -27.22645 -26.64091 -24.50935 -23.62826 -22.53920 -21.05484 -20.41538 -19.14812 -18.58351 -17.22302 -17.07039 -16.77159 -16.39170 -15.89202 -15.49521 -15.19145 -15.01384 -14.76942 -14.57417 -14.43037 -14.27292 -13.49606 -13.41905 -13.17829 -13.00919 -12.90353 -12.79888 -12.62607 -12.27893 -12.06544 -11.92707 -11.86318 -11.64761 -11.56135 -11.39972 -11.17435 -11.06526 -10.63849 -9.77587 -9.66867 -9.32004 -8.30538 -6.34170 0.33282 0.41659 1.35014 1.38161 1.52127 2.36598 2.66750 3.03435 3.28761 3.45502 3.72302 3.81794 3.97519 4.04150 4.16054 4.25979 4.34041 4.34107 4.44604 4.52288 4.58349 4.68697 4.70062 4.77000 4.84111 4.90890 4.93151 5.01789 5.06053 5.06707 5.13691 5.18887 5.31957 5.37276 5.41551 5.46583 5.52544 5.64265 5.67790 5.69948 5.98252 6.28752 6.29915 6.70658 6.87806 7.32525 8.85455 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.029192 B = 0.004090 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.947939 B = 6844.650299 C = 7206.198596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.055 4.055 3 C -0.140 4.140 4 C -0.065 4.065 5 C -0.126 4.126 6 C -0.094 4.094 7 C -0.116 4.116 8 C 0.065 3.935 9 N -0.475 5.475 10 C 0.027 3.973 11 C -0.021 4.021 12 C -0.510 4.510 13 H 0.038 0.962 14 C 0.020 3.980 15 N -0.947 5.947 16 Si 0.938 3.062 17 H -0.269 1.269 18 H -0.286 1.286 19 H -0.247 1.247 20 C 0.018 3.982 21 C 0.104 3.896 22 O -0.508 6.508 23 C -0.158 4.158 24 H 0.073 0.927 25 H 0.043 0.957 26 H 0.061 0.939 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.145 0.855 32 H 0.138 0.862 33 H 0.088 0.912 34 H 0.045 0.955 35 H 0.057 0.943 36 H 0.048 0.952 37 H 0.052 0.948 38 H 0.266 0.734 39 H 0.083 0.917 40 H 0.059 0.941 41 H 0.399 0.601 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.181 22.602 12.624 26.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.074 4.074 3 C -0.197 4.197 4 C -0.065 4.065 5 C -0.143 4.143 6 C -0.112 4.112 7 C -0.117 4.117 8 C -0.063 4.063 9 N -0.197 5.197 10 C -0.102 4.102 11 C -0.040 4.040 12 C -0.548 4.548 13 H 0.056 0.944 14 C -0.178 4.178 15 N -0.586 5.586 16 Si 0.762 3.238 17 H -0.194 1.194 18 H -0.212 1.212 19 H -0.170 1.170 20 C -0.111 4.111 21 C 0.059 3.941 22 O -0.319 6.319 23 C -0.176 4.176 24 H 0.092 0.908 25 H 0.062 0.938 26 H 0.080 0.920 27 H 0.096 0.904 28 H 0.090 0.910 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.163 0.837 32 H 0.156 0.844 33 H 0.107 0.893 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.102 0.898 40 H 0.077 0.923 41 H 0.256 0.744 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -7.308 22.386 12.804 26.805 hybrid contribution 1.364 -1.001 0.067 1.693 sum -5.944 21.385 12.871 25.658 Atomic orbital electron populations 1.21856 0.93662 1.01653 1.02868 1.20173 0.96441 0.96598 0.94166 1.21833 1.00931 0.94114 1.02831 1.19982 0.96097 0.94508 0.95915 1.21165 1.00914 1.01034 0.91232 1.21125 0.95888 0.94266 0.99938 1.20160 1.01226 0.96547 0.93778 1.21456 0.95143 0.93844 0.95826 1.68853 1.43586 1.01494 1.05730 1.23915 0.97372 0.90998 0.97913 1.20568 0.96094 0.92892 0.94456 1.21125 1.13957 0.96035 1.23713 0.94411 1.25798 0.97353 0.96427 0.98233 1.70038 1.36990 1.06060 1.45558 0.85870 0.79431 0.78745 0.79725 1.19433 1.21214 1.17048 1.23673 0.99846 0.94659 0.92900 1.18557 0.96182 0.87219 0.92179 1.84913 1.21983 1.29315 1.95734 1.21436 1.01539 0.96509 0.98149 0.90828 0.93766 0.91959 0.90386 0.91009 0.92997 0.91942 0.83723 0.84448 0.89337 0.93689 0.92498 0.93308 0.93038 0.92463 0.89849 0.92291 0.74351 0.85124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.01 71.98 0.65 -1.35 16 2 C -0.06 -0.84 3.09 -11.54 -0.04 -0.88 16 3 C -0.14 -1.67 9.01 71.98 0.65 -1.03 16 4 C -0.06 -1.35 4.78 -19.88 -0.10 -1.44 16 5 C -0.13 -2.56 8.71 22.28 0.19 -2.37 16 6 C -0.09 -2.25 9.66 22.25 0.22 -2.03 16 7 C -0.12 -3.37 5.48 -19.77 -0.11 -3.48 16 8 C 0.07 2.08 4.71 85.56 0.40 2.48 16 9 N -0.47 -18.36 6.32 -932.41 -5.89 -24.24 16 10 C 0.03 1.21 5.14 83.58 0.43 1.64 16 11 C -0.02 -1.00 2.95 -11.19 -0.03 -1.03 16 12 C -0.51 -29.36 9.38 25.60 0.24 -29.12 16 13 H 0.04 2.37 8.06 -2.91 -0.02 2.35 16 14 C 0.02 1.15 5.47 84.66 0.46 1.62 16 15 N -0.95 -59.41 13.96 21.45 0.30 -59.11 16 16 Si 0.94 45.69 27.14 68.60 1.86 47.55 16 17 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 18 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 19 H -0.25 -11.60 5.68 99.48 0.56 -11.03 16 20 C 0.02 0.72 7.25 83.58 0.61 1.33 16 21 C 0.10 3.01 6.67 22.51 0.15 3.16 16 22 O -0.51 -15.39 10.87 -92.34 -1.00 -16.40 16 23 C -0.16 -3.91 9.61 22.37 0.21 -3.70 16 24 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.06 0.81 7.39 -2.38 -0.02 0.79 16 27 H 0.08 1.16 7.87 -2.39 -0.02 1.14 16 28 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.06 0.69 7.39 -2.39 -0.02 0.68 16 31 H 0.15 2.17 7.10 -2.91 -0.02 2.15 16 32 H 0.14 2.81 8.04 -2.91 -0.02 2.78 16 33 H 0.09 2.46 7.94 -2.39 -0.02 2.44 16 34 H 0.04 1.47 7.01 -2.39 -0.02 1.45 16 35 H 0.06 2.59 7.09 -2.39 -0.02 2.57 16 36 H 0.05 2.29 7.11 -2.39 -0.02 2.27 16 37 H 0.05 2.51 7.04 -2.39 -0.02 2.50 16 38 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 39 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 40 H 0.06 2.38 7.87 -2.38 -0.02 2.36 16 41 H 0.40 8.55 9.06 -74.06 -0.67 7.88 16 42 H 0.13 2.92 7.94 -2.91 -0.02 2.89 16 Total: -1.00 -68.79 335.01 -0.60 -69.39 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: 0.19 Total: 19.00 kcal Atomic # 6 Polarization: -40.14 SS G_CDS: 3.94 Total: -36.20 kcal Atomic # 7 Polarization: -77.76 SS G_CDS: -5.59 Total: -83.35 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: -1.00 Total: -16.40 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 1.86 Total: 47.55 kcal Total: -68.79 -0.60 -69.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237046178.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.391 kcal (2) G-P(sol) polarization free energy of solvation -68.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds