Wall clock time and date at job start Mon Mar 30 2020 02:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50701 * 120.00053 * 2 1 4 4 C 1.52999 * 109.46909 * 124.99609 * 3 2 1 5 5 C 1.53001 * 109.46879 * 179.97438 * 4 3 2 6 6 H 1.08996 * 109.47157 * 55.00277 * 5 4 3 7 7 O 1.42900 * 109.47058 * 295.00030 * 5 4 3 8 8 C 1.53004 * 109.47071 * 175.00350 * 5 4 3 9 9 N 1.46500 * 109.47087 * 185.00148 * 8 5 4 10 10 C 1.36939 * 120.00049 * 269.99564 * 9 8 5 11 11 H 1.07997 * 119.99937 * 143.94147 * 10 9 8 12 12 C 1.38812 * 119.99613 * 323.94735 * 10 9 8 13 13 N 1.31618 * 120.00404 * 338.28178 * 12 10 9 14 14 Si 1.86800 * 119.99743 * 158.28155 * 12 10 9 15 15 H 1.48500 * 109.47478 * 89.99929 * 14 12 10 16 16 H 1.48502 * 109.47546 * 209.99901 * 14 12 10 17 17 H 1.48501 * 109.47297 * 329.99619 * 14 12 10 18 18 C 1.46497 * 119.99949 * 89.99811 * 9 8 5 19 19 C 1.50704 * 109.47098 * 88.43113 * 18 9 8 20 20 C 1.38225 * 120.00321 * 91.23463 * 19 18 9 21 21 C 1.38242 * 120.00148 * 179.97438 * 20 19 18 22 22 C 1.38237 * 119.99734 * 0.08850 * 21 20 19 23 23 C 1.38233 * 120.00021 * 359.86451 * 22 21 20 24 24 C 1.38235 * 119.99486 * 271.20569 * 19 18 9 25 25 H 1.07996 * 120.00520 * 179.97438 * 1 2 3 26 26 H 1.08004 * 120.00270 * 0.02562 * 1 2 3 27 27 H 1.07999 * 119.99802 * 179.97438 * 2 1 3 28 28 H 1.08993 * 109.47186 * 4.99939 * 3 2 1 29 29 H 1.08994 * 109.47165 * 244.99660 * 3 2 1 30 30 H 1.09005 * 109.47282 * 60.00198 * 4 3 2 31 31 H 1.09000 * 109.47517 * 299.99636 * 4 3 2 32 32 H 0.96703 * 114.00198 * 299.99621 * 7 5 4 33 33 H 1.08993 * 109.47392 * 64.99907 * 8 5 4 34 34 H 1.08999 * 109.47023 * 304.99846 * 8 5 4 35 35 H 0.96998 * 119.99975 * 180.02562 * 13 12 10 36 36 H 1.08999 * 109.47612 * 328.42480 * 18 9 8 37 37 H 1.09006 * 109.47071 * 208.42641 * 18 9 8 38 38 H 1.08003 * 120.00409 * 359.69681 * 20 19 18 39 39 H 1.07999 * 120.00349 * 179.97438 * 21 20 19 40 40 H 1.08001 * 119.99833 * 179.97438 * 22 21 20 41 41 H 1.07996 * 119.99921 * 180.02562 * 23 22 21 42 42 H 1.07999 * 119.99991 * 0.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0349 1.3331 1.1817 5 6 3.8004 2.6578 1.1813 6 1 3.0924 3.4865 1.1811 7 8 4.6220 2.7328 0.0146 8 6 4.6800 2.7389 2.4306 9 7 5.3210 4.0548 2.4919 10 6 6.5403 4.2508 1.9003 11 1 6.7638 5.1937 1.4235 12 6 7.4888 3.2374 1.9132 13 7 7.4206 2.2836 2.8176 14 14 8.8623 3.2275 0.6471 15 1 10.0263 3.9847 1.1734 16 1 9.2684 1.8266 0.3682 17 1 8.3842 3.8632 -0.6069 18 6 4.6575 5.1611 3.1863 19 6 5.0465 5.1458 4.6422 20 6 6.1422 5.8703 5.0724 21 6 6.4988 5.8567 6.4080 22 6 5.7605 5.1171 7.3129 23 6 4.6641 4.3934 6.8828 24 6 4.3071 4.4078 5.5474 25 1 -0.5401 -0.9352 -0.0004 26 1 -0.5401 0.9353 -0.0004 27 1 1.8499 -0.9353 0.0004 28 1 1.3586 2.1316 0.0895 29 1 2.6213 1.4026 -0.9313 30 1 3.7399 0.5065 1.0922 31 1 2.4771 1.2357 2.1131 32 1 5.2773 2.0247 -0.0513 33 1 5.4451 1.9638 2.3872 34 1 4.0647 2.5928 3.3183 35 1 8.0837 1.5757 2.8268 36 1 3.5768 5.0498 3.0978 37 1 4.9632 6.1067 2.7385 38 1 6.7226 6.4434 4.3645 39 1 7.3552 6.4224 6.7442 40 1 6.0392 5.1061 8.3563 41 1 4.0871 3.8159 7.5898 42 1 3.4509 3.8418 5.2112 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001252603465.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:42 Heat of formation + Delta-G solvation = 2.107291 kcal Electronic energy + Delta-G solvation = -21427.911118 eV Core-core repulsion = 18373.528729 eV Total energy + Delta-G solvation = -3054.382390 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -38.55335 -37.49366 -35.30470 -34.38437 -31.90916 -30.95872 -30.17659 -29.89943 -27.33167 -25.47629 -23.80198 -21.84993 -21.63267 -20.70947 -19.98357 -19.52692 -16.84623 -16.14947 -15.57681 -15.17557 -14.84273 -14.65373 -14.36464 -14.30709 -13.94505 -13.60990 -13.11430 -12.86352 -12.71393 -12.58619 -12.24098 -11.84013 -11.67005 -11.38780 -10.95917 -10.87362 -10.85411 -10.63686 -10.58977 -10.41609 -10.15735 -10.02566 -9.95655 -9.87022 -9.39609 -8.92321 -8.49160 -8.19488 -7.96958 -6.57070 -5.77092 -3.30016 2.11429 2.13857 2.34985 3.35638 3.44486 3.50836 4.42768 4.58920 4.90938 5.16224 5.27834 5.36019 5.45398 5.51451 5.54696 5.60854 5.68311 5.72115 5.85221 5.86717 5.96587 6.07182 6.13443 6.23718 6.24505 6.36680 6.44070 6.50163 6.57514 6.69453 6.72251 6.76590 6.80161 6.86891 6.92759 7.14789 7.19503 7.50528 7.61869 7.76054 7.82801 8.47893 8.61134 9.17400 9.79323 10.36513 11.22372 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.012438 B = 0.006299 C = 0.004555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.593056 B = 4443.982469 C = 6145.325389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.143 4.143 3 C -0.091 4.091 4 C -0.145 4.145 5 C 0.089 3.911 6 H 0.077 0.923 7 O -0.549 6.549 8 C 0.116 3.884 9 N -0.564 5.564 10 C -0.234 4.234 11 H 0.059 0.941 12 C 0.009 3.991 13 N -0.887 5.887 14 Si 0.892 3.108 15 H -0.289 1.289 16 H -0.291 1.291 17 H -0.276 1.276 18 C 0.173 3.827 19 C -0.070 4.070 20 C -0.099 4.099 21 C -0.125 4.125 22 C -0.143 4.143 23 C -0.127 4.127 24 C -0.117 4.117 25 H 0.092 0.908 26 H 0.094 0.906 27 H 0.105 0.895 28 H 0.061 0.939 29 H 0.077 0.923 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.365 0.635 33 H 0.101 0.899 34 H 0.029 0.971 35 H 0.252 0.748 36 H 0.042 0.958 37 H 0.054 0.946 38 H 0.115 0.885 39 H 0.109 0.891 40 H 0.107 0.893 41 H 0.108 0.892 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.726 -0.451 1.302 8.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.161 4.161 3 C -0.128 4.128 4 C -0.183 4.183 5 C 0.028 3.972 6 H 0.094 0.906 7 O -0.353 6.353 8 C -0.011 4.011 9 N -0.282 5.282 10 C -0.364 4.364 11 H 0.077 0.923 12 C -0.190 4.190 13 N -0.530 5.530 14 Si 0.722 3.278 15 H -0.216 1.216 16 H -0.217 1.217 17 H -0.201 1.201 18 C 0.047 3.953 19 C -0.074 4.074 20 C -0.118 4.118 21 C -0.143 4.143 22 C -0.162 4.162 23 C -0.145 4.145 24 C -0.136 4.136 25 H 0.110 0.890 26 H 0.112 0.888 27 H 0.123 0.877 28 H 0.080 0.920 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.211 0.789 33 H 0.118 0.882 34 H 0.047 0.953 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.133 0.867 39 H 0.127 0.873 40 H 0.125 0.875 41 H 0.126 0.874 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -8.982 -0.056 1.179 9.059 hybrid contribution 1.204 -0.877 -0.244 1.510 sum -7.778 -0.933 0.935 7.889 Atomic orbital electron populations 1.23772 0.96015 1.01398 1.03491 1.23127 0.96013 0.99030 0.97917 1.20738 0.97941 0.94242 0.99891 1.22256 0.98364 1.00000 0.97715 1.22630 0.91890 0.94251 0.88466 0.90553 1.86483 1.50911 1.54657 1.43226 1.21652 0.95915 0.91002 0.92510 1.43794 1.19337 1.06440 1.58609 1.18951 0.90077 1.00880 1.26486 0.92324 1.25075 0.96957 0.99492 0.97476 1.70003 1.35842 1.15083 1.32096 0.86466 0.82174 0.76853 0.82319 1.21576 1.21675 1.20104 1.20086 0.95223 0.93393 0.86553 1.21021 0.94646 0.94084 0.97629 1.20951 0.96540 0.99465 0.94841 1.21015 0.99288 0.99994 0.93989 1.20862 0.96956 0.99616 0.98744 1.20941 0.97722 0.99924 0.95906 1.20895 1.00156 0.99548 0.92960 0.89006 0.88798 0.87726 0.91980 0.90464 0.91913 0.91820 0.78942 0.88201 0.95277 0.93751 0.93982 0.92802 0.86707 0.87307 0.87462 0.87407 0.87362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.32 14.32 29.02 0.42 -1.91 16 2 C -0.14 -1.75 9.52 -36.02 -0.34 -2.09 16 3 C -0.09 -1.24 5.55 -27.88 -0.15 -1.40 16 4 C -0.14 -2.21 4.88 -26.73 -0.13 -2.34 16 5 C 0.09 1.65 3.21 -26.73 -0.09 1.57 16 6 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 7 O -0.55 -11.10 12.35 -35.23 -0.44 -11.54 16 8 C 0.12 2.51 4.98 -4.04 -0.02 2.49 16 9 N -0.56 -13.19 2.40 -174.61 -0.42 -13.60 16 10 C -0.23 -6.07 8.97 -15.06 -0.14 -6.21 16 11 H 0.06 1.56 7.92 -52.49 -0.42 1.15 16 12 C 0.01 0.25 4.96 -17.43 -0.09 0.16 16 13 N -0.89 -24.46 11.38 55.49 0.63 -23.83 16 14 Si 0.89 21.06 29.61 -169.99 -5.03 16.03 16 15 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 16 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 C 0.17 3.57 5.79 -5.19 -0.03 3.54 16 19 C -0.07 -1.43 5.46 -104.63 -0.57 -2.00 16 20 C -0.10 -1.97 9.70 -39.58 -0.38 -2.35 16 21 C -0.12 -2.23 10.05 -39.58 -0.40 -2.63 16 22 C -0.14 -2.43 10.05 -39.58 -0.40 -2.82 16 23 C -0.13 -2.18 10.05 -39.58 -0.40 -2.58 16 24 C -0.12 -2.19 9.64 -39.58 -0.38 -2.57 16 25 H 0.09 0.88 8.06 -52.49 -0.42 0.46 16 26 H 0.09 0.99 7.84 -52.48 -0.41 0.58 16 27 H 0.10 1.20 8.06 -52.49 -0.42 0.78 16 28 H 0.06 0.84 7.79 -51.93 -0.40 0.43 16 29 H 0.08 1.11 7.82 -51.93 -0.41 0.71 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.36 6.97 9.05 45.56 0.41 7.38 16 33 H 0.10 2.47 5.41 -51.93 -0.28 2.19 16 34 H 0.03 0.61 7.81 -51.93 -0.41 0.21 16 35 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 36 H 0.04 0.78 8.04 -51.93 -0.42 0.37 16 37 H 0.05 1.09 7.96 -51.93 -0.41 0.68 16 38 H 0.11 2.26 8.06 -52.48 -0.42 1.84 16 39 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 40 H 0.11 1.52 8.06 -52.49 -0.42 1.09 16 41 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 42 H 0.11 1.88 7.87 -52.49 -0.41 1.47 16 LS Contribution 352.77 15.07 5.32 5.32 Total: -1.00 -28.48 352.77 -9.14 -37.62 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: -6.10 Total: 11.16 kcal Atomic # 6 Polarization: -18.05 SS G_CDS: -3.10 Total: -21.15 kcal Atomic # 7 Polarization: -37.64 SS G_CDS: 0.21 Total: -37.43 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: -0.44 Total: -11.54 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.03 Total: 16.03 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -28.48 -9.14 -37.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252603465.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.724 kcal (2) G-P(sol) polarization free energy of solvation -28.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds