Wall clock time and date at job start Mon Mar 30 2020 02:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50701 * 120.00053 * 2 1 4 4 C 1.52999 * 109.46909 * 124.99609 * 3 2 1 5 5 C 1.53001 * 109.46879 * 179.97438 * 4 3 2 6 6 H 1.08996 * 109.47157 * 55.00277 * 5 4 3 7 7 O 1.42900 * 109.47058 * 295.00030 * 5 4 3 8 8 C 1.53004 * 109.47071 * 175.00350 * 5 4 3 9 9 N 1.46500 * 109.47087 * 185.00148 * 8 5 4 10 10 C 1.36939 * 120.00049 * 269.99564 * 9 8 5 11 11 H 1.07997 * 119.99937 * 143.94147 * 10 9 8 12 12 C 1.38812 * 119.99613 * 323.94735 * 10 9 8 13 13 N 1.31618 * 120.00404 * 338.28178 * 12 10 9 14 14 Si 1.86800 * 119.99743 * 158.28155 * 12 10 9 15 15 H 1.48500 * 109.47478 * 89.99929 * 14 12 10 16 16 H 1.48502 * 109.47546 * 209.99901 * 14 12 10 17 17 H 1.48501 * 109.47297 * 329.99619 * 14 12 10 18 18 C 1.46497 * 119.99949 * 89.99811 * 9 8 5 19 19 C 1.50704 * 109.47098 * 88.43113 * 18 9 8 20 20 C 1.38225 * 120.00321 * 91.23463 * 19 18 9 21 21 C 1.38242 * 120.00148 * 179.97438 * 20 19 18 22 22 C 1.38237 * 119.99734 * 0.08850 * 21 20 19 23 23 C 1.38233 * 120.00021 * 359.86451 * 22 21 20 24 24 C 1.38235 * 119.99486 * 271.20569 * 19 18 9 25 25 H 1.07996 * 120.00520 * 179.97438 * 1 2 3 26 26 H 1.08004 * 120.00270 * 0.02562 * 1 2 3 27 27 H 1.07999 * 119.99802 * 179.97438 * 2 1 3 28 28 H 1.08993 * 109.47186 * 4.99939 * 3 2 1 29 29 H 1.08994 * 109.47165 * 244.99660 * 3 2 1 30 30 H 1.09005 * 109.47282 * 60.00198 * 4 3 2 31 31 H 1.09000 * 109.47517 * 299.99636 * 4 3 2 32 32 H 0.96703 * 114.00198 * 299.99621 * 7 5 4 33 33 H 1.08993 * 109.47392 * 64.99907 * 8 5 4 34 34 H 1.08999 * 109.47023 * 304.99846 * 8 5 4 35 35 H 0.96998 * 119.99975 * 180.02562 * 13 12 10 36 36 H 1.08999 * 109.47612 * 328.42480 * 18 9 8 37 37 H 1.09006 * 109.47071 * 208.42641 * 18 9 8 38 38 H 1.08003 * 120.00409 * 359.69681 * 20 19 18 39 39 H 1.07999 * 120.00349 * 179.97438 * 21 20 19 40 40 H 1.08001 * 119.99833 * 179.97438 * 22 21 20 41 41 H 1.07996 * 119.99921 * 180.02562 * 23 22 21 42 42 H 1.07999 * 119.99991 * 0.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0349 1.3331 1.1817 5 6 3.8004 2.6578 1.1813 6 1 3.0924 3.4865 1.1811 7 8 4.6220 2.7328 0.0146 8 6 4.6800 2.7389 2.4306 9 7 5.3210 4.0548 2.4919 10 6 6.5403 4.2508 1.9003 11 1 6.7638 5.1937 1.4235 12 6 7.4888 3.2374 1.9132 13 7 7.4206 2.2836 2.8176 14 14 8.8623 3.2275 0.6471 15 1 10.0263 3.9847 1.1734 16 1 9.2684 1.8266 0.3682 17 1 8.3842 3.8632 -0.6069 18 6 4.6575 5.1611 3.1863 19 6 5.0465 5.1458 4.6422 20 6 6.1422 5.8703 5.0724 21 6 6.4988 5.8567 6.4080 22 6 5.7605 5.1171 7.3129 23 6 4.6641 4.3934 6.8828 24 6 4.3071 4.4078 5.5474 25 1 -0.5401 -0.9352 -0.0004 26 1 -0.5401 0.9353 -0.0004 27 1 1.8499 -0.9353 0.0004 28 1 1.3586 2.1316 0.0895 29 1 2.6213 1.4026 -0.9313 30 1 3.7399 0.5065 1.0922 31 1 2.4771 1.2357 2.1131 32 1 5.2773 2.0247 -0.0513 33 1 5.4451 1.9638 2.3872 34 1 4.0647 2.5928 3.3183 35 1 8.0837 1.5757 2.8268 36 1 3.5768 5.0498 3.0978 37 1 4.9632 6.1067 2.7385 38 1 6.7226 6.4434 4.3645 39 1 7.3552 6.4224 6.7442 40 1 6.0392 5.1061 8.3563 41 1 4.0871 3.8159 7.5898 42 1 3.4509 3.8418 5.2112 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001252603465.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:42 Heat of formation + Delta-G solvation = -12.450503 kcal Electronic energy + Delta-G solvation = -21428.542392 eV Core-core repulsion = 18373.528729 eV Total energy + Delta-G solvation = -3055.013663 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.02648 -38.98707 -36.78722 -35.72941 -33.73400 -32.35699 -31.58948 -31.42521 -28.82184 -27.23511 -25.27839 -23.35010 -23.11409 -22.16043 -21.51448 -20.55943 -18.71420 -17.60399 -17.04205 -16.60372 -16.44186 -16.06410 -15.90310 -15.79110 -15.54623 -15.11919 -14.70584 -14.19977 -14.09767 -13.99483 -13.51922 -13.34152 -13.19204 -12.93218 -12.71966 -12.57567 -12.30253 -12.14588 -11.94246 -11.81540 -11.73700 -11.71135 -11.62130 -11.48689 -10.71928 -10.46759 -10.10428 -9.62539 -9.43809 -8.47196 -7.74498 -5.30940 0.68302 0.70044 1.44171 1.45659 1.50544 1.60617 2.55894 3.06034 3.31376 3.65202 3.90417 4.05353 4.12196 4.16130 4.23024 4.32191 4.39592 4.40718 4.42814 4.59261 4.64732 4.69645 4.81106 4.86977 4.93508 4.98801 5.04190 5.07724 5.16126 5.32952 5.33928 5.35011 5.38744 5.72323 5.74007 5.75641 5.78439 5.85953 5.94853 6.01397 6.34138 6.51912 7.03136 7.24908 7.90350 8.43045 9.20681 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.012438 B = 0.006299 C = 0.004555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.593056 B = 4443.982469 C = 6145.325389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.161 4.161 3 C -0.084 4.084 4 C -0.133 4.133 5 C 0.098 3.902 6 H 0.075 0.925 7 O -0.563 6.563 8 C 0.121 3.879 9 N -0.577 5.577 10 C -0.235 4.235 11 H 0.044 0.956 12 C -0.027 4.027 13 N -0.913 5.913 14 Si 0.945 3.055 15 H -0.294 1.294 16 H -0.290 1.290 17 H -0.277 1.277 18 C 0.174 3.826 19 C -0.091 4.091 20 C -0.124 4.124 21 C -0.132 4.132 22 C -0.141 4.141 23 C -0.128 4.128 24 C -0.129 4.129 25 H 0.110 0.890 26 H 0.098 0.902 27 H 0.111 0.889 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.368 0.632 33 H 0.073 0.927 34 H 0.032 0.968 35 H 0.248 0.752 36 H 0.059 0.941 37 H 0.047 0.953 38 H 0.103 0.897 39 H 0.131 0.869 40 H 0.142 0.858 41 H 0.139 0.861 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.979 -0.991 2.261 10.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.179 4.179 3 C -0.121 4.121 4 C -0.172 4.172 5 C 0.037 3.963 6 H 0.093 0.907 7 O -0.368 6.368 8 C -0.006 4.006 9 N -0.296 5.296 10 C -0.366 4.366 11 H 0.062 0.938 12 C -0.224 4.224 13 N -0.558 5.558 14 Si 0.774 3.226 15 H -0.222 1.222 16 H -0.216 1.216 17 H -0.202 1.202 18 C 0.048 3.952 19 C -0.094 4.094 20 C -0.143 4.143 21 C -0.150 4.150 22 C -0.159 4.159 23 C -0.146 4.146 24 C -0.148 4.148 25 H 0.128 0.872 26 H 0.117 0.883 27 H 0.129 0.871 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.214 0.786 33 H 0.090 0.910 34 H 0.050 0.950 35 H 0.057 0.943 36 H 0.077 0.923 37 H 0.065 0.935 38 H 0.121 0.879 39 H 0.149 0.851 40 H 0.160 0.840 41 H 0.157 0.843 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -10.254 -0.583 2.138 10.491 hybrid contribution 1.511 -0.627 -0.455 1.698 sum -8.743 -1.210 1.684 8.986 Atomic orbital electron populations 1.23991 0.95639 1.02534 1.01108 1.23065 0.96494 0.98373 1.00017 1.20621 0.97545 0.95462 0.98452 1.22101 0.98346 0.97684 0.99029 1.22487 0.91243 0.96115 0.86444 0.90675 1.86454 1.51346 1.55156 1.43805 1.21584 0.95390 0.89516 0.94077 1.43905 1.18847 1.07388 1.59443 1.18978 0.91048 1.00276 1.26251 0.93797 1.25497 0.98604 0.99507 0.98753 1.70117 1.36544 1.15648 1.33443 0.85656 0.79948 0.76481 0.80515 1.22158 1.21580 1.20183 1.20094 0.95878 0.92169 0.87035 1.20990 0.95488 0.95405 0.97520 1.21065 0.96950 1.00337 0.95988 1.21332 1.00124 1.00246 0.93276 1.21311 0.96157 0.98205 1.00273 1.21352 0.97892 0.99621 0.95734 1.21108 1.00482 0.99441 0.93728 0.87204 0.88338 0.87138 0.91782 0.91513 0.92184 0.90992 0.78624 0.90971 0.94996 0.94297 0.92260 0.93496 0.87867 0.85097 0.84045 0.84277 0.86405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.83 14.32 67.79 0.97 -2.86 16 2 C -0.16 -3.65 9.52 25.65 0.24 -3.40 16 3 C -0.08 -2.19 5.55 29.85 0.17 -2.02 16 4 C -0.13 -3.96 4.88 30.59 0.15 -3.81 16 5 C 0.10 3.63 3.21 30.60 0.10 3.73 16 6 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 7 O -0.56 -22.95 12.35 -148.98 -1.84 -24.79 16 8 C 0.12 5.27 4.98 86.38 0.43 5.70 16 9 N -0.58 -27.41 2.40 -706.34 -1.70 -29.10 16 10 C -0.23 -12.45 8.97 84.03 0.75 -11.70 16 11 H 0.04 2.42 7.92 -2.91 -0.02 2.40 16 12 C -0.03 -1.43 4.96 84.86 0.42 -1.01 16 13 N -0.91 -51.18 11.38 21.65 0.25 -50.94 16 14 Si 0.94 44.15 29.61 68.60 2.03 46.18 16 15 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 16 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 17 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 18 C 0.17 7.24 5.79 85.63 0.50 7.74 16 19 C -0.09 -3.69 5.46 -19.87 -0.11 -3.80 16 20 C -0.12 -4.98 9.70 22.27 0.22 -4.77 16 21 C -0.13 -4.54 10.05 22.27 0.22 -4.31 16 22 C -0.14 -4.38 10.05 22.27 0.22 -4.16 16 23 C -0.13 -4.08 10.05 22.27 0.22 -3.85 16 24 C -0.13 -4.68 9.64 22.27 0.21 -4.46 16 25 H 0.11 1.76 8.06 -2.91 -0.02 1.73 16 26 H 0.10 1.83 7.84 -2.91 -0.02 1.80 16 27 H 0.11 2.35 8.06 -2.91 -0.02 2.32 16 28 H 0.06 1.63 7.79 -2.39 -0.02 1.62 16 29 H 0.07 1.88 7.82 -2.39 -0.02 1.86 16 30 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 31 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.37 14.30 9.05 -74.06 -0.67 13.63 16 33 H 0.07 3.64 5.41 -2.39 -0.01 3.63 16 34 H 0.03 1.34 7.81 -2.39 -0.02 1.32 16 35 H 0.25 13.61 8.31 -92.71 -0.77 12.84 16 36 H 0.06 2.20 8.04 -2.39 -0.02 2.19 16 37 H 0.05 1.97 7.96 -2.38 -0.02 1.95 16 38 H 0.10 4.23 8.06 -2.91 -0.02 4.20 16 39 H 0.13 3.80 8.06 -2.91 -0.02 3.78 16 40 H 0.14 3.39 8.06 -2.91 -0.02 3.37 16 41 H 0.14 3.50 8.06 -2.91 -0.02 3.48 16 42 H 0.12 3.94 7.87 -2.91 -0.02 3.92 16 Total: -1.00 -60.77 352.77 3.77 -57.00 By element: Atomic # 1 Polarization: 34.34 SS G_CDS: 0.31 Total: 34.64 kcal Atomic # 6 Polarization: -37.71 SS G_CDS: 4.72 Total: -32.98 kcal Atomic # 7 Polarization: -78.59 SS G_CDS: -1.45 Total: -80.04 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: -1.84 Total: -24.79 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -60.77 3.77 -57.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252603465.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.547 kcal (2) G-P(sol) polarization free energy of solvation -60.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds