Wall clock time and date at job start Mon Mar 30 2020 02:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50699 * 120.00181 * 2 1 4 4 C 1.52999 * 109.47430 * 125.00134 * 3 2 1 5 5 C 1.52999 * 109.47417 * 180.02562 * 4 3 2 6 6 H 1.09004 * 109.46485 * 303.55662 * 5 4 3 7 7 O 1.42894 * 109.47526 * 63.55660 * 5 4 3 8 8 C 1.53001 * 109.47062 * 183.56096 * 5 4 3 9 9 N 1.46499 * 109.46803 * 174.66521 * 8 5 4 10 10 C 1.36939 * 120.00067 * 95.24707 * 9 8 5 11 11 H 1.07998 * 120.00293 * 212.97100 * 10 9 8 12 12 C 1.38807 * 119.99794 * 33.24751 * 10 9 8 13 13 N 1.31624 * 120.00098 * 214.57980 * 12 10 9 14 14 Si 1.86801 * 120.00387 * 34.58539 * 12 10 9 15 15 H 1.48494 * 109.47259 * 89.70245 * 14 12 10 16 16 H 1.48492 * 109.47316 * 209.70803 * 14 12 10 17 17 H 1.48503 * 109.46551 * 329.70420 * 14 12 10 18 18 C 1.46504 * 120.00102 * 275.24688 * 9 8 5 19 19 C 1.50701 * 109.46860 * 270.00303 * 18 9 8 20 20 C 1.38238 * 119.99790 * 269.72644 * 19 18 9 21 21 C 1.38239 * 120.00022 * 179.77247 * 20 19 18 22 22 C 1.38232 * 119.99476 * 0.47712 * 21 20 19 23 23 C 1.38237 * 120.00471 * 359.79411 * 22 21 20 24 24 C 1.38228 * 119.99853 * 359.95778 * 23 22 21 25 25 H 1.08003 * 119.99930 * 0.02562 * 1 2 3 26 26 H 1.07999 * 119.99962 * 179.97438 * 1 2 3 27 27 H 1.08003 * 119.99930 * 179.97438 * 2 1 3 28 28 H 1.08994 * 109.47390 * 4.99447 * 3 2 1 29 29 H 1.09000 * 109.47146 * 244.99638 * 3 2 1 30 30 H 1.08994 * 109.47395 * 59.99316 * 4 3 2 31 31 H 1.09000 * 109.46551 * 299.99868 * 4 3 2 32 32 H 0.96708 * 113.99847 * 64.61980 * 7 5 4 33 33 H 1.08999 * 109.47393 * 54.66965 * 8 5 4 34 34 H 1.09002 * 109.47188 * 294.66355 * 8 5 4 35 35 H 0.96998 * 120.00055 * 179.97438 * 13 12 10 36 36 H 1.08994 * 109.46992 * 29.99991 * 18 9 8 37 37 H 1.08999 * 109.47320 * 150.00396 * 18 9 8 38 38 H 1.08001 * 120.00331 * 359.97438 * 20 19 18 39 39 H 1.07998 * 120.00003 * 180.25205 * 21 20 19 40 40 H 1.08005 * 119.99516 * 179.77674 * 22 21 20 41 41 H 1.07996 * 120.00102 * 179.97438 * 23 22 21 42 42 H 1.07995 * 120.00252 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 6 3.7996 2.6583 1.1819 6 1 4.3066 2.7855 0.2254 7 8 2.8838 3.7367 1.3827 8 6 4.8334 2.6504 2.3099 9 7 5.6507 3.8637 2.2317 10 6 5.3246 4.9588 2.9865 11 1 5.5159 5.9520 2.6080 12 6 4.7534 4.7921 4.2405 13 7 3.8583 5.6534 4.6758 14 14 5.2550 3.3455 5.3107 15 1 6.4123 3.7332 6.1564 16 1 4.1161 2.9541 6.1795 17 1 5.6352 2.1991 4.4467 18 6 6.8169 3.9055 1.3459 19 6 8.0357 3.4361 2.0977 20 6 8.8189 4.3468 2.7820 21 6 9.9343 3.9157 3.4756 22 6 10.2720 2.5752 3.4766 23 6 9.4919 1.6653 2.7877 24 6 8.3737 2.0958 2.0985 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8499 -0.9353 0.0004 28 1 1.3586 2.1316 0.0895 29 1 2.6213 1.4025 -0.9314 30 1 3.7399 0.5065 1.0921 31 1 2.4772 1.2356 2.1129 32 1 2.4480 3.7270 2.2460 33 1 5.4737 1.7740 2.2098 34 1 4.3215 2.6185 3.2717 35 1 3.4589 5.5368 5.5520 36 1 6.6456 3.2544 0.4888 37 1 6.9743 4.9273 1.0004 38 1 8.5576 5.3947 2.7775 39 1 10.5439 4.6266 4.0135 40 1 11.1454 2.2389 4.0155 41 1 9.7560 0.6181 2.7882 42 1 7.7646 1.3850 1.5599 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001252603466.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:46 Heat of formation + Delta-G solvation = 10.368826 kcal Electronic energy + Delta-G solvation = -21527.941637 eV Core-core repulsion = 18473.917495 eV Total energy + Delta-G solvation = -3054.024143 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -38.79648 -37.66853 -35.45881 -34.44741 -32.04907 -31.15247 -30.38189 -30.31110 -27.49744 -25.80519 -23.77964 -22.02147 -21.83949 -20.90865 -20.07596 -19.61760 -16.97484 -16.32963 -15.80576 -15.31789 -15.05609 -14.67038 -14.53449 -14.38992 -14.30189 -13.75757 -13.16957 -12.94366 -12.80780 -12.47130 -12.39168 -12.20602 -12.10474 -11.73362 -11.19882 -10.98633 -10.91927 -10.73379 -10.62152 -10.55967 -10.36790 -10.32072 -9.99734 -9.41351 -9.37595 -9.09268 -8.46097 -8.40967 -8.18297 -6.90438 -6.07276 -3.28251 1.88468 1.91704 2.32270 3.34356 3.46878 3.55817 4.27349 4.53145 4.79190 5.04512 5.16060 5.23192 5.32215 5.35417 5.38235 5.41021 5.50369 5.57830 5.67054 5.72629 5.90869 5.94449 5.94563 6.04050 6.06262 6.15418 6.19295 6.30872 6.43158 6.46372 6.55994 6.57430 6.65093 6.68389 6.83256 6.90446 6.94808 7.00248 7.28046 7.54401 7.97178 8.32693 8.57570 8.95770 9.69863 10.09675 11.07596 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.016020 B = 0.005879 C = 0.004949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.395798 B = 4761.830090 C = 5656.367905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.148 4.148 3 C -0.090 4.090 4 C -0.148 4.148 5 C 0.090 3.910 6 H 0.084 0.916 7 O -0.543 6.543 8 C 0.119 3.881 9 N -0.583 5.583 10 C -0.253 4.253 11 H 0.078 0.922 12 C 0.044 3.956 13 N -0.877 5.877 14 Si 0.835 3.165 15 H -0.291 1.291 16 H -0.297 1.297 17 H -0.261 1.261 18 C 0.177 3.823 19 C -0.083 4.083 20 C -0.101 4.101 21 C -0.125 4.125 22 C -0.141 4.141 23 C -0.129 4.129 24 C -0.121 4.121 25 H 0.096 0.904 26 H 0.092 0.908 27 H 0.103 0.897 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.372 0.628 33 H 0.040 0.960 34 H 0.060 0.940 35 H 0.261 0.739 36 H 0.048 0.952 37 H 0.062 0.938 38 H 0.122 0.878 39 H 0.113 0.887 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.136 -9.682 -6.811 12.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.166 4.166 3 C -0.127 4.127 4 C -0.187 4.187 5 C 0.028 3.972 6 H 0.102 0.898 7 O -0.348 6.348 8 C -0.007 4.007 9 N -0.302 5.302 10 C -0.381 4.381 11 H 0.096 0.904 12 C -0.157 4.157 13 N -0.516 5.516 14 Si 0.662 3.338 15 H -0.219 1.219 16 H -0.224 1.224 17 H -0.186 1.186 18 C 0.052 3.948 19 C -0.086 4.086 20 C -0.119 4.119 21 C -0.143 4.143 22 C -0.160 4.160 23 C -0.147 4.147 24 C -0.140 4.140 25 H 0.114 0.886 26 H 0.110 0.890 27 H 0.121 0.879 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.218 0.782 33 H 0.058 0.942 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.080 0.920 38 H 0.140 0.860 39 H 0.131 0.869 40 H 0.128 0.872 41 H 0.129 0.871 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 3.168 -9.416 -7.293 12.324 hybrid contribution 0.225 -1.217 1.725 2.123 sum 3.393 -10.633 -5.569 12.473 Atomic orbital electron populations 1.23821 0.96064 1.01551 1.02666 1.23093 0.96077 0.98819 0.98618 1.20704 0.98520 0.94870 0.98592 1.22289 0.98537 0.99503 0.98356 1.22547 0.89997 0.84685 1.00020 0.89807 1.86495 1.59356 1.49339 1.39569 1.21924 0.92743 0.88941 0.97096 1.44104 1.23662 1.12991 1.49420 1.18626 1.37421 0.86221 0.95846 0.90445 1.25315 0.97404 0.95965 0.97023 1.70086 1.23573 1.38460 1.19492 0.87678 0.78705 0.85398 0.82018 1.21864 1.22427 1.18616 1.20045 0.83691 0.99570 0.91522 1.21088 0.95805 0.93234 0.98470 1.21088 0.94040 1.00072 0.96740 1.21104 0.97861 0.95662 0.99708 1.20942 1.00210 0.93712 1.01099 1.20995 0.96166 0.98762 0.98755 1.20972 0.96926 0.95603 1.00461 0.88560 0.89003 0.87876 0.90731 0.91361 0.91793 0.92006 0.78153 0.94185 0.92174 0.92869 0.93321 0.91967 0.86049 0.86903 0.87166 0.87147 0.87072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.27 14.32 29.02 0.42 -1.85 16 2 C -0.15 -1.75 9.52 -36.02 -0.34 -2.09 16 3 C -0.09 -1.19 5.54 -27.88 -0.15 -1.34 16 4 C -0.15 -2.15 4.91 -26.73 -0.13 -2.28 16 5 C 0.09 1.58 3.22 -26.73 -0.09 1.50 16 6 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 7 O -0.54 -11.07 12.56 -35.23 -0.44 -11.51 16 8 C 0.12 2.41 3.47 -4.04 -0.01 2.40 16 9 N -0.58 -12.92 2.07 -174.61 -0.36 -13.28 16 10 C -0.25 -6.65 9.60 -15.06 -0.14 -6.79 16 11 H 0.08 2.23 8.06 -52.49 -0.42 1.81 16 12 C 0.04 1.21 5.02 -17.43 -0.09 1.12 16 13 N -0.88 -25.39 13.97 55.49 0.78 -24.61 16 14 Si 0.83 21.09 26.35 -169.99 -4.48 16.61 16 15 H -0.29 -7.75 7.11 56.52 0.40 -7.35 16 16 H -0.30 -7.58 7.11 56.52 0.40 -7.18 16 17 H -0.26 -6.32 5.59 56.52 0.32 -6.00 16 18 C 0.18 3.39 5.82 -5.19 -0.03 3.36 16 19 C -0.08 -1.54 5.46 -104.62 -0.57 -2.11 16 20 C -0.10 -1.85 9.70 -39.58 -0.38 -2.24 16 21 C -0.13 -2.08 10.05 -39.58 -0.40 -2.47 16 22 C -0.14 -2.19 10.05 -39.58 -0.40 -2.59 16 23 C -0.13 -2.02 10.05 -39.59 -0.40 -2.41 16 24 C -0.12 -2.05 9.70 -39.59 -0.38 -2.44 16 25 H 0.10 1.07 7.84 -52.48 -0.41 0.65 16 26 H 0.09 0.87 8.06 -52.49 -0.42 0.45 16 27 H 0.10 1.10 8.06 -52.48 -0.42 0.67 16 28 H 0.07 1.07 7.43 -51.93 -0.39 0.68 16 29 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.37 7.45 9.03 45.56 0.41 7.86 16 33 H 0.04 0.76 8.11 -51.93 -0.42 0.34 16 34 H 0.06 1.34 4.15 -51.93 -0.22 1.12 16 35 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 36 H 0.05 0.82 8.01 -51.93 -0.42 0.41 16 37 H 0.06 1.19 7.98 -51.93 -0.41 0.78 16 38 H 0.12 2.23 8.06 -52.49 -0.42 1.81 16 39 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 40 H 0.11 1.41 8.06 -52.48 -0.42 0.99 16 41 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 42 H 0.11 1.71 8.06 -52.49 -0.42 1.28 16 LS Contribution 349.07 15.07 5.26 5.26 Total: -1.00 -29.42 349.07 -8.50 -37.92 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -6.15 Total: 9.86 kcal Atomic # 6 Polarization: -17.14 SS G_CDS: -3.11 Total: -20.25 kcal Atomic # 7 Polarization: -38.31 SS G_CDS: 0.41 Total: -37.89 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: -0.44 Total: -11.51 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.48 Total: 16.61 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.42 -8.50 -37.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252603466.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.293 kcal (2) G-P(sol) polarization free energy of solvation -29.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds