Wall clock time and date at job start Mon Mar 30 2020 02:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.46867 * 2 1 4 4 C 1.53002 * 109.47186 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47004 * 179.97438 * 4 3 2 6 6 N 1.46503 * 109.46980 * 179.97438 * 5 4 3 7 7 C 1.34779 * 120.00328 * 180.02562 * 6 5 4 8 8 O 1.21283 * 119.99419 * 359.97438 * 7 6 5 9 9 C 1.50695 * 120.00080 * 180.02562 * 7 6 5 10 10 H 1.09001 * 109.47295 * 299.99387 * 9 7 6 11 11 C 1.50696 * 109.47530 * 59.99483 * 9 7 6 12 12 H 1.07997 * 120.00260 * 235.33651 * 11 9 7 13 13 C 1.37879 * 119.99977 * 55.33425 * 11 9 7 14 14 N 1.31516 * 119.99735 * 1.97120 * 13 11 9 15 15 Si 1.86800 * 120.00111 * 181.96775 * 13 11 9 16 16 H 1.48495 * 109.47133 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.46977 * 120.00228 * 15 13 11 18 18 H 1.48496 * 109.47065 * 239.99944 * 15 13 11 19 19 C 1.50707 * 109.46942 * 179.97438 * 9 7 6 20 20 C 1.38224 * 120.00104 * 47.22099 * 19 9 7 21 21 C 1.38237 * 120.00255 * 180.02562 * 20 19 9 22 22 C 1.38238 * 119.99745 * 359.95072 * 21 20 19 23 23 C 1.38236 * 119.99912 * 0.02562 * 22 21 20 24 24 C 1.38232 * 119.99717 * 227.19961 * 19 9 7 25 25 H 1.09001 * 109.47265 * 60.00727 * 1 2 3 26 26 H 1.09006 * 109.46818 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47572 * 300.00634 * 1 2 3 28 28 H 1.08997 * 109.47572 * 239.99366 * 2 1 3 29 29 H 1.09001 * 109.46775 * 119.99070 * 2 1 3 30 30 H 1.09003 * 109.47944 * 59.99478 * 3 2 1 31 31 H 1.09001 * 109.47183 * 299.99223 * 3 2 1 32 32 H 1.08997 * 109.47288 * 59.99345 * 4 3 2 33 33 H 1.09001 * 109.46741 * 299.99245 * 4 3 2 34 34 H 1.09000 * 109.47119 * 60.00172 * 5 4 3 35 35 H 1.09001 * 109.47533 * 299.99479 * 5 4 3 36 36 H 0.97004 * 120.00070 * 359.97438 * 6 5 4 37 37 H 0.97003 * 120.00319 * 179.97438 * 14 13 11 38 38 H 1.08000 * 120.00315 * 359.97438 * 20 19 9 39 39 H 1.07994 * 120.00683 * 179.97438 * 21 20 19 40 40 H 1.08001 * 120.00281 * 179.72897 * 22 21 20 41 41 H 1.07996 * 120.00326 * 179.97438 * 23 22 21 42 42 H 1.08001 * 120.00068 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0798 2.8851 0.0000 6 7 5.5448 2.8852 0.0012 7 6 6.2187 4.0524 0.0015 8 8 5.6122 5.1027 0.0002 9 6 7.7257 4.0524 0.0021 10 1 8.0887 3.5387 0.8924 11 6 8.2287 3.3418 -1.2279 12 1 8.9102 2.5098 -1.1302 13 6 7.8188 3.7540 -2.4782 14 7 7.0196 4.7914 -2.5993 15 14 8.3986 2.8389 -4.0000 16 1 9.2833 1.7168 -3.5957 17 1 7.2236 2.3029 -4.7330 18 1 9.1493 3.7692 -4.8809 19 6 8.2280 5.4733 0.0016 20 6 7.6914 6.3964 0.8795 21 6 8.1518 7.6998 0.8787 22 6 9.1495 8.0799 0.0006 23 6 9.6864 7.1566 -0.8770 24 6 9.2256 5.8533 -0.8765 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 1.6765 1.9565 0.8899 31 1 1.6767 1.9563 -0.8901 32 1 3.9337 0.9285 -0.8890 33 1 3.9328 0.9290 0.8910 34 1 3.7161 3.3994 0.8895 35 1 3.7169 3.3984 -0.8905 36 1 6.0299 2.0451 0.0026 37 1 6.7314 5.0816 -3.4789 38 1 6.9119 6.0995 1.5655 39 1 7.7323 8.4212 1.5643 40 1 9.5062 9.0993 -0.0031 41 1 10.4656 7.4536 -1.5634 42 1 9.6454 5.1319 -1.5619 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264070094.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:43 Heat of formation + Delta-G solvation = -39.756483 kcal Electronic energy + Delta-G solvation = -21276.756427 eV Core-core repulsion = 18220.558688 eV Total energy + Delta-G solvation = -3056.197739 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -38.90762 -37.48878 -36.08548 -33.64814 -33.51970 -30.81421 -30.38331 -29.63035 -27.39263 -25.51995 -23.77052 -21.78072 -21.21010 -21.01604 -20.35993 -19.02886 -16.74234 -15.86561 -15.81061 -15.15512 -14.96423 -14.79096 -14.28334 -13.91796 -13.61870 -13.51207 -13.16620 -12.89727 -12.46423 -12.33365 -12.13064 -11.97404 -11.68195 -11.50619 -11.26496 -11.05621 -10.98541 -10.89847 -10.71476 -10.64006 -10.47129 -10.38451 -10.01271 -9.62931 -9.32259 -8.68671 -8.24492 -7.90374 -7.64694 -7.35385 -6.10772 -4.27081 2.59027 2.65539 3.19899 3.30392 3.31580 4.17602 4.28692 4.45030 4.88972 4.90793 5.04809 5.10558 5.17524 5.30683 5.42424 5.65580 5.73695 5.74551 5.89084 5.89899 6.00084 6.01967 6.04221 6.09519 6.14284 6.26026 6.39767 6.48123 6.51363 6.66808 6.72210 6.86015 6.95921 7.17776 7.25866 7.57910 7.63100 7.69133 7.71816 7.83954 8.20839 8.31670 8.66593 8.87245 9.39392 9.77224 10.89643 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.017580 B = 0.005051 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.310744 B = 5542.139279 C = 6749.720832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.117 4.117 4 C -0.130 4.130 5 C 0.128 3.872 6 N -0.738 5.738 7 C 0.549 3.451 8 O -0.549 6.549 9 C 0.055 3.945 10 H 0.056 0.944 11 C -0.540 4.540 12 H 0.067 0.933 13 C 0.074 3.926 14 N -0.841 5.841 15 Si 0.885 3.115 16 H -0.271 1.271 17 H -0.284 1.284 18 H -0.282 1.282 19 C -0.014 4.014 20 C -0.100 4.100 21 C -0.145 4.145 22 C -0.145 4.145 23 C -0.148 4.148 24 C -0.065 4.065 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.051 0.949 35 H 0.055 0.945 36 H 0.395 0.605 37 H 0.264 0.736 38 H 0.107 0.893 39 H 0.101 0.899 40 H 0.099 0.901 41 H 0.101 0.899 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.998 -5.957 5.026 9.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.155 4.155 4 C -0.167 4.167 5 C 0.003 3.997 6 N -0.391 5.391 7 C 0.338 3.662 8 O -0.426 6.426 9 C 0.034 3.966 10 H 0.074 0.926 11 C -0.577 4.577 12 H 0.085 0.915 13 C -0.134 4.134 14 N -0.474 5.474 15 Si 0.712 3.288 16 H -0.195 1.195 17 H -0.210 1.210 18 H -0.208 1.208 19 C -0.015 4.015 20 C -0.118 4.118 21 C -0.163 4.163 22 C -0.164 4.164 23 C -0.166 4.166 24 C -0.083 4.083 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.228 0.772 37 H 0.074 0.926 38 H 0.125 0.875 39 H 0.119 0.881 40 H 0.118 0.882 41 H 0.119 0.881 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -5.560 -5.038 4.880 8.950 hybrid contribution 0.263 -0.705 -1.267 1.474 sum -5.297 -5.743 3.612 8.608 Atomic orbital electron populations 1.21781 0.96138 1.01290 1.01798 1.21529 0.95594 0.97106 1.01958 1.21530 0.95089 0.96560 1.02299 1.21791 0.95515 0.97061 1.02380 1.21048 0.82278 0.95349 1.01038 1.45806 1.05186 1.09544 1.78529 1.20988 0.90879 0.82137 0.72181 1.90530 1.70869 1.31561 1.49635 1.17898 0.88949 0.91719 0.98070 0.92603 1.20731 1.30523 1.17292 0.89188 0.91501 1.25057 0.94720 0.94526 0.99068 1.70093 1.30900 1.22587 1.23812 0.86633 0.78695 0.80079 0.83353 1.19495 1.21010 1.20809 1.19824 0.93314 0.95753 0.92567 1.20970 0.98091 0.93243 0.99529 1.20819 0.98770 0.96294 1.00419 1.20768 0.99095 0.98192 0.98311 1.20985 1.01268 0.94604 0.99779 1.21144 0.95787 0.94754 0.96624 0.92781 0.93027 0.92823 0.92055 0.92117 0.91927 0.91830 0.91492 0.91740 0.93092 0.92656 0.77205 0.92617 0.87526 0.88131 0.88240 0.88080 0.85471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.91 37.16 0.37 -0.96 16 2 C -0.12 -1.21 5.93 -26.73 -0.16 -1.37 16 3 C -0.12 -1.33 5.21 -26.73 -0.14 -1.47 16 4 C -0.13 -1.70 5.33 -26.73 -0.14 -1.84 16 5 C 0.13 2.22 5.67 -4.04 -0.02 2.20 16 6 N -0.74 -14.75 5.45 -60.29 -0.33 -15.08 16 7 C 0.55 13.18 5.45 -10.99 -0.06 13.12 16 8 O -0.55 -14.92 13.95 5.55 0.08 -14.84 16 9 C 0.05 1.31 2.78 -94.08 -0.26 1.04 16 10 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 11 C -0.54 -13.23 7.12 -34.44 -0.25 -13.47 16 12 H 0.07 1.59 7.81 -52.49 -0.41 1.18 16 13 C 0.07 1.88 3.99 -17.82 -0.07 1.81 16 14 N -0.84 -23.21 10.88 55.43 0.60 -22.61 16 15 Si 0.89 19.90 29.54 -169.99 -5.02 14.88 16 16 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 19 C -0.01 -0.33 4.52 -104.63 -0.47 -0.80 16 20 C -0.10 -2.32 8.21 -39.59 -0.33 -2.64 16 21 C -0.14 -3.04 10.05 -39.58 -0.40 -3.43 16 22 C -0.15 -2.94 10.05 -39.58 -0.40 -3.34 16 23 C -0.15 -3.16 10.05 -39.58 -0.40 -3.56 16 24 C -0.07 -1.55 8.20 -39.58 -0.32 -1.87 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.39 7.12 8.36 -40.82 -0.34 6.78 16 37 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 38 H 0.11 2.45 7.01 -52.49 -0.37 2.08 16 39 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 40 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 41 H 0.10 1.89 8.06 -52.49 -0.42 1.47 16 42 H 0.13 3.11 6.02 -52.49 -0.32 2.79 16 LS Contribution 343.01 15.07 5.17 5.17 Total: -1.00 -29.70 343.01 -9.46 -39.16 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: -6.91 Total: 9.91 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: -3.05 Total: -16.58 kcal Atomic # 7 Polarization: -37.96 SS G_CDS: 0.27 Total: -37.69 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: 0.08 Total: -14.84 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.70 -9.46 -39.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264070094.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.596 kcal (2) G-P(sol) polarization free energy of solvation -29.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds