Wall clock time and date at job start Mon Mar 30 2020 02:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.46867 * 2 1 4 4 C 1.53002 * 109.47186 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47004 * 179.97438 * 4 3 2 6 6 N 1.46503 * 109.46980 * 179.97438 * 5 4 3 7 7 C 1.34779 * 120.00328 * 180.02562 * 6 5 4 8 8 O 1.21283 * 119.99419 * 359.97438 * 7 6 5 9 9 C 1.50695 * 120.00080 * 180.02562 * 7 6 5 10 10 H 1.09001 * 109.47295 * 299.99387 * 9 7 6 11 11 C 1.50696 * 109.47530 * 59.99483 * 9 7 6 12 12 H 1.07997 * 120.00260 * 235.33651 * 11 9 7 13 13 C 1.37879 * 119.99977 * 55.33425 * 11 9 7 14 14 N 1.31516 * 119.99735 * 1.97120 * 13 11 9 15 15 Si 1.86800 * 120.00111 * 181.96775 * 13 11 9 16 16 H 1.48495 * 109.47133 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.46977 * 120.00228 * 15 13 11 18 18 H 1.48496 * 109.47065 * 239.99944 * 15 13 11 19 19 C 1.50707 * 109.46942 * 179.97438 * 9 7 6 20 20 C 1.38224 * 120.00104 * 47.22099 * 19 9 7 21 21 C 1.38237 * 120.00255 * 180.02562 * 20 19 9 22 22 C 1.38238 * 119.99745 * 359.95072 * 21 20 19 23 23 C 1.38236 * 119.99912 * 0.02562 * 22 21 20 24 24 C 1.38232 * 119.99717 * 227.19961 * 19 9 7 25 25 H 1.09001 * 109.47265 * 60.00727 * 1 2 3 26 26 H 1.09006 * 109.46818 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47572 * 300.00634 * 1 2 3 28 28 H 1.08997 * 109.47572 * 239.99366 * 2 1 3 29 29 H 1.09001 * 109.46775 * 119.99070 * 2 1 3 30 30 H 1.09003 * 109.47944 * 59.99478 * 3 2 1 31 31 H 1.09001 * 109.47183 * 299.99223 * 3 2 1 32 32 H 1.08997 * 109.47288 * 59.99345 * 4 3 2 33 33 H 1.09001 * 109.46741 * 299.99245 * 4 3 2 34 34 H 1.09000 * 109.47119 * 60.00172 * 5 4 3 35 35 H 1.09001 * 109.47533 * 299.99479 * 5 4 3 36 36 H 0.97004 * 120.00070 * 359.97438 * 6 5 4 37 37 H 0.97003 * 120.00319 * 179.97438 * 14 13 11 38 38 H 1.08000 * 120.00315 * 359.97438 * 20 19 9 39 39 H 1.07994 * 120.00683 * 179.97438 * 21 20 19 40 40 H 1.08001 * 120.00281 * 179.72897 * 22 21 20 41 41 H 1.07996 * 120.00326 * 179.97438 * 23 22 21 42 42 H 1.08001 * 120.00068 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0798 2.8851 0.0000 6 7 5.5448 2.8852 0.0012 7 6 6.2187 4.0524 0.0015 8 8 5.6122 5.1027 0.0002 9 6 7.7257 4.0524 0.0021 10 1 8.0887 3.5387 0.8924 11 6 8.2287 3.3418 -1.2279 12 1 8.9102 2.5098 -1.1302 13 6 7.8188 3.7540 -2.4782 14 7 7.0196 4.7914 -2.5993 15 14 8.3986 2.8389 -4.0000 16 1 9.2833 1.7168 -3.5957 17 1 7.2236 2.3029 -4.7330 18 1 9.1493 3.7692 -4.8809 19 6 8.2280 5.4733 0.0016 20 6 7.6914 6.3964 0.8795 21 6 8.1518 7.6998 0.8787 22 6 9.1495 8.0799 0.0006 23 6 9.6864 7.1566 -0.8770 24 6 9.2256 5.8533 -0.8765 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 1.6765 1.9565 0.8899 31 1 1.6767 1.9563 -0.8901 32 1 3.9337 0.9285 -0.8890 33 1 3.9328 0.9290 0.8910 34 1 3.7161 3.3994 0.8895 35 1 3.7169 3.3984 -0.8905 36 1 6.0299 2.0451 0.0026 37 1 6.7314 5.0816 -3.4789 38 1 6.9119 6.0995 1.5655 39 1 7.7323 8.4212 1.5643 40 1 9.5062 9.0993 -0.0031 41 1 10.4656 7.4536 -1.5634 42 1 9.6454 5.1319 -1.5619 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264070094.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:43 Heat of formation + Delta-G solvation = -55.600164 kcal Electronic energy + Delta-G solvation = -21277.443460 eV Core-core repulsion = 18220.558688 eV Total energy + Delta-G solvation = -3056.884773 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.69658 -39.16559 -37.24880 -35.46913 -34.99250 -32.65484 -31.60406 -31.34154 -29.08438 -26.84501 -25.53512 -23.05345 -22.83167 -22.16759 -21.86755 -20.79503 -18.61101 -17.51724 -17.07258 -16.78721 -16.66188 -16.54636 -15.72456 -15.39115 -15.26857 -14.74523 -14.47867 -14.22322 -13.96827 -13.88627 -13.80289 -13.62399 -13.08619 -12.97507 -12.79282 -12.54246 -12.48457 -12.27778 -11.98294 -11.90768 -11.76211 -11.65128 -11.41142 -11.38249 -11.14061 -10.64793 -10.13928 -9.62789 -9.37284 -9.09172 -8.06491 -6.26548 0.88475 0.93831 1.39905 1.45781 1.54216 2.33533 2.46875 2.81638 3.20933 3.36359 3.88793 4.01108 4.17040 4.33242 4.34959 4.36400 4.44172 4.51091 4.60344 4.67528 4.73978 4.78198 4.86847 4.95940 5.01248 5.03313 5.11531 5.14377 5.17585 5.21351 5.33404 5.44359 5.46510 5.50646 5.55499 5.71205 5.89206 5.93195 5.98570 6.02298 6.43676 6.53854 6.77345 7.12609 7.42584 7.95587 8.92688 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.017580 B = 0.005051 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.310744 B = 5542.139279 C = 6749.720832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.114 4.114 4 C -0.116 4.116 5 C 0.129 3.871 6 N -0.729 5.729 7 C 0.545 3.455 8 O -0.587 6.587 9 C 0.045 3.955 10 H 0.069 0.931 11 C -0.533 4.533 12 H 0.073 0.927 13 C 0.039 3.961 14 N -0.876 5.876 15 Si 0.941 3.059 16 H -0.257 1.257 17 H -0.290 1.290 18 H -0.287 1.287 19 C -0.036 4.036 20 C -0.119 4.119 21 C -0.147 4.147 22 C -0.142 4.142 23 C -0.152 4.152 24 C -0.087 4.087 25 H 0.050 0.950 26 H 0.062 0.938 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.082 0.918 34 H 0.049 0.951 35 H 0.025 0.975 36 H 0.405 0.595 37 H 0.254 0.746 38 H 0.098 0.902 39 H 0.130 0.870 40 H 0.139 0.861 41 H 0.126 0.874 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.688 -6.572 5.382 9.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.152 4.152 4 C -0.154 4.154 5 C 0.005 3.995 6 N -0.381 5.381 7 C 0.335 3.665 8 O -0.467 6.467 9 C 0.024 3.976 10 H 0.087 0.913 11 C -0.570 4.570 12 H 0.091 0.909 13 C -0.165 4.165 14 N -0.510 5.510 15 Si 0.767 3.233 16 H -0.180 1.180 17 H -0.216 1.216 18 H -0.214 1.214 19 C -0.037 4.037 20 C -0.137 4.137 21 C -0.165 4.165 22 C -0.160 4.160 23 C -0.170 4.170 24 C -0.106 4.106 25 H 0.069 0.931 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.101 0.899 34 H 0.068 0.932 35 H 0.044 0.956 36 H 0.240 0.760 37 H 0.064 0.936 38 H 0.117 0.883 39 H 0.148 0.852 40 H 0.156 0.844 41 H 0.144 0.856 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -5.238 -5.711 5.250 9.360 hybrid contribution 0.187 -0.484 -1.316 1.414 sum -5.050 -6.195 3.934 8.909 Atomic orbital electron populations 1.21778 0.95308 1.02077 1.01830 1.21502 0.96320 0.95639 1.02411 1.21517 0.93628 0.97973 1.02112 1.21712 0.96696 0.93818 1.03180 1.21143 0.80678 0.98173 0.99494 1.45749 1.06383 1.08952 1.77032 1.21063 0.91120 0.82538 0.71812 1.90494 1.71524 1.33081 1.51611 1.18029 0.89053 0.92174 0.98385 0.91332 1.20935 1.29755 1.16873 0.89469 0.90891 1.25598 0.94697 0.94892 1.01362 1.70264 1.32803 1.24460 1.23476 0.85756 0.78030 0.79207 0.80270 1.18042 1.21619 1.21360 1.19950 0.94061 0.96209 0.93494 1.21038 0.98442 0.94422 0.99801 1.21199 0.98605 0.95861 1.00830 1.21183 0.98092 0.99738 0.96950 1.21318 1.01607 0.93822 1.00263 1.21135 0.96605 0.95872 0.96942 0.93100 0.91876 0.92507 0.92077 0.91186 0.91505 0.92750 0.91609 0.89891 0.93235 0.95606 0.76020 0.93625 0.88347 0.85237 0.84369 0.85561 0.86977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 9.91 71.98 0.71 -1.67 16 2 C -0.12 -2.13 5.93 30.59 0.18 -1.95 16 3 C -0.11 -2.47 5.21 30.59 0.16 -2.31 16 4 C -0.12 -2.92 5.33 30.59 0.16 -2.76 16 5 C 0.13 4.56 5.67 86.38 0.49 5.05 16 6 N -0.73 -29.35 5.45 -463.05 -2.53 -31.88 16 7 C 0.55 26.70 5.45 87.66 0.48 27.17 16 8 O -0.59 -32.86 13.95 -3.04 -0.04 -32.90 16 9 C 0.04 2.16 2.78 -13.03 -0.04 2.12 16 10 H 0.07 3.01 8.14 -2.39 -0.02 2.99 16 11 C -0.53 -26.11 7.12 25.60 0.18 -25.92 16 12 H 0.07 3.42 7.81 -2.91 -0.02 3.40 16 13 C 0.04 1.97 3.99 84.65 0.34 2.31 16 14 N -0.88 -49.27 10.88 21.45 0.23 -49.04 16 15 Si 0.94 40.90 29.54 68.60 2.03 42.93 16 16 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 17 H -0.29 -12.79 7.11 99.48 0.71 -12.09 16 18 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 19 C -0.04 -1.78 4.52 -19.87 -0.09 -1.87 16 20 C -0.12 -5.53 8.21 22.27 0.18 -5.35 16 21 C -0.15 -5.94 10.05 22.27 0.22 -5.72 16 22 C -0.14 -5.38 10.05 22.27 0.22 -5.16 16 23 C -0.15 -6.27 10.05 22.27 0.22 -6.05 16 24 C -0.09 -4.17 8.20 22.27 0.18 -3.99 16 25 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.06 0.84 8.14 -2.38 -0.02 0.83 16 27 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.40 14.41 8.36 -92.70 -0.77 13.64 16 37 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 38 H 0.10 4.63 7.01 -2.91 -0.02 4.61 16 39 H 0.13 4.38 8.06 -2.91 -0.02 4.36 16 40 H 0.14 4.14 8.06 -2.91 -0.02 4.12 16 41 H 0.13 4.45 8.06 -2.91 -0.02 4.43 16 42 H 0.11 5.56 6.02 -2.91 -0.02 5.54 16 Total: -1.00 -64.29 343.01 3.52 -60.78 By element: Atomic # 1 Polarization: 35.99 SS G_CDS: 0.21 Total: 36.20 kcal Atomic # 6 Polarization: -29.70 SS G_CDS: 3.62 Total: -26.09 kcal Atomic # 7 Polarization: -78.62 SS G_CDS: -2.29 Total: -80.92 kcal Atomic # 8 Polarization: -32.86 SS G_CDS: -0.04 Total: -32.90 kcal Atomic # 14 Polarization: 40.90 SS G_CDS: 2.03 Total: 42.93 kcal Total: -64.29 3.52 -60.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264070094.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.175 kcal (2) G-P(sol) polarization free energy of solvation -64.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds