Wall clock time and date at job start Mon Mar 30 2020 02:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47102 * 2 1 4 4 C 1.53000 * 109.47271 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47290 * 180.02562 * 4 3 2 6 6 N 1.46495 * 109.47243 * 179.97438 * 5 4 3 7 7 C 1.34778 * 120.00321 * 179.97438 * 6 5 4 8 8 O 1.21279 * 119.99767 * 0.02562 * 7 6 5 9 9 C 1.50697 * 120.00150 * 179.97438 * 7 6 5 10 10 H 1.08999 * 109.47276 * 60.00374 * 9 7 6 11 11 C 1.50701 * 109.47254 * 300.00433 * 9 7 6 12 12 H 1.07998 * 119.99934 * 124.62155 * 11 9 7 13 13 C 1.37879 * 120.00066 * 304.34159 * 11 9 7 14 14 N 1.31521 * 120.00057 * 6.38614 * 13 11 9 15 15 Si 1.86795 * 120.00243 * 186.38187 * 13 11 9 16 16 H 1.48502 * 109.47294 * 60.00126 * 15 13 11 17 17 H 1.48498 * 109.47568 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47204 * 300.00545 * 15 13 11 19 19 C 1.50697 * 109.47039 * 180.02562 * 9 7 6 20 20 C 1.38237 * 120.00283 * 313.11562 * 19 9 7 21 21 C 1.38232 * 120.00497 * 179.81076 * 20 19 9 22 22 C 1.38237 * 119.99539 * 0.39808 * 21 20 19 23 23 C 1.38230 * 120.00431 * 359.85241 * 22 21 20 24 24 C 1.38237 * 120.00167 * 133.38639 * 19 9 7 25 25 H 1.08999 * 109.47259 * 299.99922 * 1 2 3 26 26 H 1.08998 * 109.46954 * 59.99854 * 1 2 3 27 27 H 1.08997 * 109.47032 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46958 * 240.00510 * 2 1 3 29 29 H 1.08998 * 109.47131 * 120.00671 * 2 1 3 30 30 H 1.08999 * 109.47000 * 59.99919 * 3 2 1 31 31 H 1.08998 * 109.47335 * 299.99913 * 3 2 1 32 32 H 1.08999 * 109.47424 * 59.99873 * 4 3 2 33 33 H 1.09008 * 109.46687 * 300.00050 * 4 3 2 34 34 H 1.08999 * 109.47438 * 59.99334 * 5 4 3 35 35 H 1.09008 * 109.46849 * 299.99403 * 5 4 3 36 36 H 0.97009 * 120.00194 * 359.97438 * 6 5 4 37 37 H 0.96991 * 120.00161 * 179.97438 * 14 13 11 38 38 H 1.08010 * 119.99544 * 359.97438 * 20 19 9 39 39 H 1.08001 * 120.00303 * 180.22770 * 21 20 19 40 40 H 1.08005 * 119.99967 * 179.83335 * 22 21 20 41 41 H 1.08006 * 120.00374 * 179.97438 * 23 22 21 42 42 H 1.08004 * 120.00196 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8850 0.0000 6 7 5.5450 2.8850 0.0000 7 6 6.2189 4.0522 0.0000 8 8 5.6125 5.1025 0.0005 9 6 7.7259 4.0522 0.0006 10 1 8.0896 3.5382 -0.8892 11 6 8.2278 3.3420 1.2313 12 1 8.9088 2.5094 1.1344 13 6 7.8220 3.7587 2.4814 14 7 6.9023 4.6917 2.5972 15 14 8.5785 2.9982 4.0107 16 1 10.0438 3.2392 4.0104 17 1 7.9755 3.6140 5.2200 18 1 8.3174 1.5364 4.0176 19 6 8.2282 5.4730 0.0011 20 6 7.6875 6.3976 -0.8728 21 6 8.1455 7.7019 -0.8697 22 6 9.1500 8.0795 0.0017 23 6 9.6943 7.1537 0.8720 24 6 9.2336 5.8504 0.8716 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9330 0.9288 -0.8908 33 1 3.9337 0.9285 0.8892 34 1 3.7170 3.3984 0.8904 35 1 3.7163 3.3993 -0.8897 36 1 6.0301 2.0449 0.0000 37 1 6.6166 4.9846 3.4766 38 1 6.9053 6.1016 -1.5562 39 1 7.7205 8.4251 -1.5499 40 1 9.5098 9.0979 0.0024 41 1 10.4794 7.4487 1.5526 42 1 9.6588 5.1271 1.5516 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264070095.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:47 Heat of formation + Delta-G solvation = -39.717099 kcal Electronic energy + Delta-G solvation = -21274.692781 eV Core-core repulsion = 18218.496750 eV Total energy + Delta-G solvation = -3056.196031 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -38.89518 -37.48950 -36.06556 -33.63017 -33.48802 -30.82655 -30.36677 -29.67758 -27.38582 -25.50199 -23.78240 -21.76534 -21.23330 -20.99444 -20.36790 -19.00101 -16.74219 -15.87268 -15.79436 -15.14324 -14.95492 -14.77073 -14.25675 -13.92405 -13.63998 -13.51064 -13.15471 -12.88292 -12.45052 -12.34148 -12.16932 -11.97816 -11.63626 -11.48570 -11.29680 -11.03474 -10.92660 -10.88674 -10.75947 -10.61910 -10.46116 -10.37709 -10.01995 -9.64705 -9.35531 -8.70754 -8.19795 -7.85091 -7.68185 -7.38773 -6.12148 -4.26136 2.55310 2.60726 3.21830 3.29851 3.30459 4.20626 4.30120 4.50112 4.90362 4.92227 5.02876 5.10764 5.17763 5.32543 5.44558 5.67439 5.75242 5.76223 5.86159 5.91587 5.98602 6.02641 6.05613 6.06456 6.16140 6.28076 6.39321 6.48444 6.54595 6.66763 6.69928 6.83994 6.95751 7.14609 7.22194 7.55177 7.63505 7.69110 7.71766 7.82191 8.17132 8.29057 8.68079 8.90323 9.39807 9.82602 10.89684 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.017668 B = 0.005026 C = 0.004135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.367836 B = 5569.917662 C = 6769.337085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.117 4.117 4 C -0.129 4.129 5 C 0.129 3.871 6 N -0.737 5.737 7 C 0.553 3.447 8 O -0.551 6.551 9 C 0.055 3.945 10 H 0.056 0.944 11 C -0.542 4.542 12 H 0.066 0.934 13 C 0.077 3.923 14 N -0.842 5.842 15 Si 0.885 3.115 16 H -0.273 1.273 17 H -0.287 1.287 18 H -0.276 1.276 19 C -0.015 4.015 20 C -0.099 4.099 21 C -0.143 4.143 22 C -0.146 4.146 23 C -0.147 4.147 24 C -0.074 4.074 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.055 0.945 35 H 0.050 0.950 36 H 0.394 0.606 37 H 0.265 0.735 38 H 0.108 0.892 39 H 0.102 0.898 40 H 0.100 0.900 41 H 0.102 0.898 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.784 -5.671 -5.034 8.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.155 4.155 4 C -0.167 4.167 5 C 0.004 3.996 6 N -0.389 5.389 7 C 0.342 3.658 8 O -0.428 6.428 9 C 0.034 3.966 10 H 0.074 0.926 11 C -0.580 4.580 12 H 0.084 0.916 13 C -0.131 4.131 14 N -0.474 5.474 15 Si 0.712 3.288 16 H -0.199 1.199 17 H -0.213 1.213 18 H -0.201 1.201 19 C -0.016 4.016 20 C -0.117 4.117 21 C -0.161 4.161 22 C -0.164 4.164 23 C -0.165 4.165 24 C -0.092 4.092 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.227 0.773 37 H 0.076 0.924 38 H 0.126 0.874 39 H 0.120 0.880 40 H 0.118 0.882 41 H 0.120 0.880 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.360 -4.756 -4.886 8.673 hybrid contribution 0.401 -0.646 1.266 1.477 sum -4.959 -5.402 -3.621 8.178 Atomic orbital electron populations 1.21781 0.96152 1.01277 1.01793 1.21531 0.95578 0.97132 1.01947 1.21527 0.95126 0.96527 1.02284 1.21790 0.95473 0.97129 1.02337 1.21030 0.82330 0.95255 1.00995 1.45760 1.05127 1.09495 1.78555 1.20888 0.90739 0.82140 0.72006 1.90516 1.70856 1.31574 1.49851 1.17885 0.89162 0.91542 0.98042 0.92603 1.20650 1.30610 1.17518 0.89173 0.91617 1.25042 0.94416 0.94625 0.99054 1.70025 1.26195 1.27056 1.24154 0.86761 0.79864 0.79489 0.82650 1.19878 1.21295 1.20145 1.19881 0.93301 0.95850 0.92583 1.20999 0.98059 0.93186 0.99470 1.20843 0.98621 0.96308 1.00375 1.20781 0.98971 0.98248 0.98384 1.20998 1.01147 0.94525 0.99847 1.21195 0.96108 0.94872 0.97059 0.92779 0.92831 0.93039 0.92134 0.92060 0.91827 0.91953 0.91801 0.91506 0.92627 0.93191 0.77293 0.92439 0.87372 0.88034 0.88153 0.87986 0.85412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.91 37.16 0.37 -0.97 16 2 C -0.12 -1.22 5.93 -26.73 -0.16 -1.38 16 3 C -0.12 -1.34 5.21 -26.73 -0.14 -1.48 16 4 C -0.13 -1.72 5.33 -26.73 -0.14 -1.86 16 5 C 0.13 2.27 5.67 -4.04 -0.02 2.24 16 6 N -0.74 -14.87 5.45 -60.30 -0.33 -15.20 16 7 C 0.55 13.33 5.28 -10.99 -0.06 13.28 16 8 O -0.55 -15.00 13.86 5.56 0.08 -14.92 16 9 C 0.05 1.31 2.78 -94.08 -0.26 1.05 16 10 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 11 C -0.54 -13.31 7.11 -34.44 -0.24 -13.55 16 12 H 0.07 1.56 7.82 -52.49 -0.41 1.15 16 13 C 0.08 1.95 3.90 -17.82 -0.07 1.88 16 14 N -0.84 -23.26 11.11 55.43 0.62 -22.65 16 15 Si 0.89 19.94 29.54 -169.99 -5.02 14.92 16 16 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 17 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 19 C -0.02 -0.37 4.63 -104.62 -0.48 -0.85 16 20 C -0.10 -2.28 8.21 -39.58 -0.32 -2.60 16 21 C -0.14 -2.98 10.05 -39.58 -0.40 -3.38 16 22 C -0.15 -2.91 10.05 -39.58 -0.40 -3.31 16 23 C -0.15 -3.10 10.05 -39.58 -0.40 -3.50 16 24 C -0.07 -1.76 8.46 -39.58 -0.33 -2.09 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.07 0.91 8.14 -51.92 -0.42 0.49 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 35 H 0.05 0.88 8.14 -51.92 -0.42 0.46 16 36 H 0.39 7.21 8.36 -40.82 -0.34 6.87 16 37 H 0.27 7.27 8.31 -40.82 -0.34 6.94 16 38 H 0.11 2.47 6.99 -52.48 -0.37 2.11 16 39 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 40 H 0.10 1.69 8.06 -52.48 -0.42 1.27 16 41 H 0.10 1.88 8.06 -52.48 -0.42 1.46 16 42 H 0.13 3.10 6.05 -52.48 -0.32 2.78 16 LS Contribution 343.26 15.07 5.17 5.17 Total: -1.00 -29.62 343.26 -9.46 -39.08 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: -6.91 Total: 10.13 kcal Atomic # 6 Polarization: -13.47 SS G_CDS: -3.07 Total: -16.54 kcal Atomic # 7 Polarization: -38.13 SS G_CDS: 0.29 Total: -37.85 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: 0.08 Total: -14.92 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.62 -9.46 -39.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264070095.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.634 kcal (2) G-P(sol) polarization free energy of solvation -29.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds