Wall clock time and date at job start Mon Mar 30 2020 02:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47102 * 2 1 4 4 C 1.53000 * 109.47271 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47290 * 180.02562 * 4 3 2 6 6 N 1.46495 * 109.47243 * 179.97438 * 5 4 3 7 7 C 1.34778 * 120.00321 * 179.97438 * 6 5 4 8 8 O 1.21279 * 119.99767 * 0.02562 * 7 6 5 9 9 C 1.50697 * 120.00150 * 179.97438 * 7 6 5 10 10 H 1.08999 * 109.47276 * 60.00374 * 9 7 6 11 11 C 1.50701 * 109.47254 * 300.00433 * 9 7 6 12 12 H 1.07998 * 119.99934 * 124.62155 * 11 9 7 13 13 C 1.37879 * 120.00066 * 304.34159 * 11 9 7 14 14 N 1.31521 * 120.00057 * 6.38614 * 13 11 9 15 15 Si 1.86795 * 120.00243 * 186.38187 * 13 11 9 16 16 H 1.48502 * 109.47294 * 60.00126 * 15 13 11 17 17 H 1.48498 * 109.47568 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47204 * 300.00545 * 15 13 11 19 19 C 1.50697 * 109.47039 * 180.02562 * 9 7 6 20 20 C 1.38237 * 120.00283 * 313.11562 * 19 9 7 21 21 C 1.38232 * 120.00497 * 179.81076 * 20 19 9 22 22 C 1.38237 * 119.99539 * 0.39808 * 21 20 19 23 23 C 1.38230 * 120.00431 * 359.85241 * 22 21 20 24 24 C 1.38237 * 120.00167 * 133.38639 * 19 9 7 25 25 H 1.08999 * 109.47259 * 299.99922 * 1 2 3 26 26 H 1.08998 * 109.46954 * 59.99854 * 1 2 3 27 27 H 1.08997 * 109.47032 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46958 * 240.00510 * 2 1 3 29 29 H 1.08998 * 109.47131 * 120.00671 * 2 1 3 30 30 H 1.08999 * 109.47000 * 59.99919 * 3 2 1 31 31 H 1.08998 * 109.47335 * 299.99913 * 3 2 1 32 32 H 1.08999 * 109.47424 * 59.99873 * 4 3 2 33 33 H 1.09008 * 109.46687 * 300.00050 * 4 3 2 34 34 H 1.08999 * 109.47438 * 59.99334 * 5 4 3 35 35 H 1.09008 * 109.46849 * 299.99403 * 5 4 3 36 36 H 0.97009 * 120.00194 * 359.97438 * 6 5 4 37 37 H 0.96991 * 120.00161 * 179.97438 * 14 13 11 38 38 H 1.08010 * 119.99544 * 359.97438 * 20 19 9 39 39 H 1.08001 * 120.00303 * 180.22770 * 21 20 19 40 40 H 1.08005 * 119.99967 * 179.83335 * 22 21 20 41 41 H 1.08006 * 120.00374 * 179.97438 * 23 22 21 42 42 H 1.08004 * 120.00196 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8850 0.0000 6 7 5.5450 2.8850 0.0000 7 6 6.2189 4.0522 0.0000 8 8 5.6125 5.1025 0.0005 9 6 7.7259 4.0522 0.0006 10 1 8.0896 3.5382 -0.8892 11 6 8.2278 3.3420 1.2313 12 1 8.9088 2.5094 1.1344 13 6 7.8220 3.7587 2.4814 14 7 6.9023 4.6917 2.5972 15 14 8.5785 2.9982 4.0107 16 1 10.0438 3.2392 4.0104 17 1 7.9755 3.6140 5.2200 18 1 8.3174 1.5364 4.0176 19 6 8.2282 5.4730 0.0011 20 6 7.6875 6.3976 -0.8728 21 6 8.1455 7.7019 -0.8697 22 6 9.1500 8.0795 0.0017 23 6 9.6943 7.1537 0.8720 24 6 9.2336 5.8504 0.8716 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9330 0.9288 -0.8908 33 1 3.9337 0.9285 0.8892 34 1 3.7170 3.3984 0.8904 35 1 3.7163 3.3993 -0.8897 36 1 6.0301 2.0449 0.0000 37 1 6.6166 4.9846 3.4766 38 1 6.9053 6.1016 -1.5562 39 1 7.7205 8.4251 -1.5499 40 1 9.5098 9.0979 0.0024 41 1 10.4794 7.4487 1.5526 42 1 9.6588 5.1271 1.5516 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264070095.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:46 Heat of formation + Delta-G solvation = -55.518253 kcal Electronic energy + Delta-G solvation = -21275.377970 eV Core-core repulsion = 18218.496750 eV Total energy + Delta-G solvation = -3056.881221 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.68206 -39.16438 -37.23687 -35.45454 -34.96940 -32.67098 -31.59258 -31.37424 -29.07555 -26.83805 -25.54411 -23.05691 -22.83422 -22.15757 -21.87034 -20.77386 -18.61156 -17.52691 -17.06248 -16.77119 -16.65738 -16.52914 -15.71493 -15.39622 -15.27948 -14.74041 -14.47351 -14.21674 -14.01255 -13.84342 -13.79497 -13.62950 -13.07394 -12.99044 -12.68945 -12.57255 -12.53136 -12.27473 -11.97778 -11.90025 -11.77301 -11.64451 -11.42704 -11.38345 -11.16976 -10.65874 -10.09509 -9.58862 -9.39880 -9.11347 -8.08400 -6.25926 0.86107 0.90387 1.42659 1.45742 1.51274 2.35643 2.49040 2.85513 3.19972 3.34565 3.89825 4.01768 4.17725 4.32716 4.34624 4.35381 4.44829 4.49470 4.61403 4.66232 4.74919 4.78720 4.87427 4.96407 5.00023 5.03239 5.11390 5.14594 5.16536 5.21843 5.34076 5.44349 5.45144 5.50949 5.53033 5.70621 5.87446 5.92164 5.97113 6.05051 6.41270 6.51459 6.76955 7.15613 7.42706 8.00031 8.92037 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.017668 B = 0.005026 C = 0.004135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.367836 B = 5569.917662 C = 6769.337085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.114 4.114 4 C -0.116 4.116 5 C 0.131 3.869 6 N -0.729 5.729 7 C 0.549 3.451 8 O -0.589 6.589 9 C 0.045 3.955 10 H 0.068 0.932 11 C -0.536 4.536 12 H 0.073 0.927 13 C 0.042 3.958 14 N -0.876 5.876 15 Si 0.939 3.061 16 H -0.267 1.267 17 H -0.298 1.298 18 H -0.267 1.267 19 C -0.038 4.038 20 C -0.118 4.118 21 C -0.145 4.145 22 C -0.142 4.142 23 C -0.150 4.150 24 C -0.097 4.097 25 H 0.050 0.950 26 H 0.056 0.944 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.060 0.940 30 H 0.054 0.946 31 H 0.066 0.934 32 H 0.082 0.918 33 H 0.064 0.936 34 H 0.025 0.975 35 H 0.048 0.952 36 H 0.404 0.596 37 H 0.255 0.745 38 H 0.099 0.901 39 H 0.131 0.869 40 H 0.140 0.860 41 H 0.129 0.871 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.358 -6.189 -5.364 9.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.152 4.152 4 C -0.154 4.154 5 C 0.006 3.994 6 N -0.380 5.380 7 C 0.339 3.661 8 O -0.469 6.469 9 C 0.024 3.976 10 H 0.086 0.914 11 C -0.573 4.573 12 H 0.091 0.909 13 C -0.162 4.162 14 N -0.511 5.511 15 Si 0.765 3.235 16 H -0.192 1.192 17 H -0.224 1.224 18 H -0.191 1.191 19 C -0.039 4.039 20 C -0.136 4.136 21 C -0.163 4.163 22 C -0.159 4.159 23 C -0.168 4.168 24 C -0.115 4.115 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.100 0.900 33 H 0.083 0.917 34 H 0.043 0.957 35 H 0.067 0.933 36 H 0.238 0.762 37 H 0.065 0.935 38 H 0.117 0.883 39 H 0.149 0.851 40 H 0.158 0.842 41 H 0.147 0.853 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -4.921 -5.331 -5.230 8.944 hybrid contribution 0.289 -0.457 1.304 1.411 sum -4.632 -5.788 -3.927 8.389 Atomic orbital electron populations 1.21777 0.95290 1.02078 1.01834 1.21503 0.96331 0.95639 1.02396 1.21513 0.93623 0.97964 1.02100 1.21707 0.96692 0.93869 1.03098 1.21118 0.80750 0.98075 0.99409 1.45710 1.06316 1.08914 1.77108 1.20981 0.91013 0.82517 0.71616 1.90480 1.71521 1.33071 1.51795 1.18016 0.89201 0.92082 0.98331 0.91381 1.20870 1.29826 1.17170 0.89468 0.90937 1.25580 0.94509 0.94788 1.01366 1.70200 1.28090 1.29040 1.23731 0.85902 0.79270 0.79039 0.79297 1.19159 1.22442 1.19140 1.19998 0.94109 0.96241 0.93583 1.21059 0.98411 0.94395 0.99755 1.21223 0.98485 0.95840 1.00770 1.21205 0.97938 0.99819 0.96980 1.21339 1.01495 0.93689 1.00287 1.21197 0.96886 0.96042 0.97407 0.93089 0.92507 0.91870 0.91206 0.92089 0.92750 0.91518 0.89966 0.91682 0.95656 0.93332 0.76169 0.93539 0.88267 0.85141 0.84227 0.85349 0.86847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 9.91 71.98 0.71 -1.69 16 2 C -0.12 -2.16 5.93 30.59 0.18 -1.98 16 3 C -0.11 -2.50 5.21 30.59 0.16 -2.34 16 4 C -0.12 -2.97 5.33 30.59 0.16 -2.80 16 5 C 0.13 4.68 5.67 86.38 0.49 5.17 16 6 N -0.73 -29.71 5.45 -463.07 -2.53 -32.24 16 7 C 0.55 27.05 5.28 87.66 0.46 27.52 16 8 O -0.59 -33.06 13.86 -3.02 -0.04 -33.10 16 9 C 0.04 2.17 2.78 -13.03 -0.04 2.13 16 10 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 11 C -0.54 -26.33 7.11 25.60 0.18 -26.15 16 12 H 0.07 3.39 7.82 -2.91 -0.02 3.37 16 13 C 0.04 2.14 3.90 84.65 0.33 2.47 16 14 N -0.88 -49.44 11.11 21.45 0.24 -49.21 16 15 Si 0.94 40.90 29.54 68.60 2.03 42.93 16 16 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 17 H -0.30 -13.45 7.11 99.48 0.71 -12.74 16 18 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 19 C -0.04 -1.88 4.63 -19.87 -0.09 -1.97 16 20 C -0.12 -5.47 8.21 22.27 0.18 -5.29 16 21 C -0.15 -5.81 10.05 22.27 0.22 -5.59 16 22 C -0.14 -5.29 10.05 22.27 0.22 -5.07 16 23 C -0.15 -6.10 10.05 22.27 0.22 -5.87 16 24 C -0.10 -4.59 8.46 22.27 0.19 -4.41 16 25 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 34 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 36 H 0.40 14.65 8.36 -92.70 -0.77 13.87 16 37 H 0.26 14.40 8.31 -92.72 -0.77 13.63 16 38 H 0.10 4.66 6.99 -2.91 -0.02 4.64 16 39 H 0.13 4.36 8.06 -2.91 -0.02 4.34 16 40 H 0.14 4.10 8.06 -2.91 -0.02 4.08 16 41 H 0.13 4.42 8.06 -2.91 -0.02 4.40 16 42 H 0.11 5.56 6.05 -2.91 -0.02 5.54 16 Total: -1.00 -64.26 343.26 3.51 -60.75 By element: Atomic # 1 Polarization: 36.54 SS G_CDS: 0.21 Total: 36.75 kcal Atomic # 6 Polarization: -29.48 SS G_CDS: 3.60 Total: -25.88 kcal Atomic # 7 Polarization: -79.16 SS G_CDS: -2.29 Total: -81.44 kcal Atomic # 8 Polarization: -33.06 SS G_CDS: -0.04 Total: -33.10 kcal Atomic # 14 Polarization: 40.90 SS G_CDS: 2.03 Total: 42.93 kcal Total: -64.26 3.51 -60.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264070095.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.232 kcal (2) G-P(sol) polarization free energy of solvation -64.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds