Wall clock time and date at job start Mon Mar 30 2020 02:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50706 * 109.47109 * 2 1 4 4 C 1.38386 * 119.85319 * 265.25233 * 3 2 1 5 5 C 1.37928 * 120.14668 * 180.29257 * 4 3 2 6 6 C 1.39600 * 119.85418 * 359.72756 * 5 4 3 7 7 C 1.47839 * 120.14742 * 180.02562 * 6 5 4 8 8 O 1.21556 * 120.00066 * 179.97438 * 7 6 5 9 9 N 1.34780 * 120.00238 * 359.97438 * 7 6 5 10 10 C 1.46494 * 120.00224 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.47164 * 179.97438 * 10 9 7 12 12 C 1.50695 * 109.47510 * 180.02562 * 11 10 9 13 13 H 1.08010 * 119.99852 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00677 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99538 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00638 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.47153 * 59.99284 * 16 14 12 18 18 H 1.48501 * 109.47593 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.46798 * 300.00167 * 16 14 12 20 20 C 1.39563 * 119.70871 * 359.97438 * 6 5 4 21 21 C 1.37983 * 119.85110 * 0.02562 * 20 6 5 22 22 C 1.50698 * 119.92312 * 179.97438 * 21 20 6 23 23 C 1.53006 * 109.47184 * 264.99735 * 22 21 20 24 24 H 1.08998 * 109.47213 * 300.00018 * 1 2 3 25 25 H 1.09002 * 109.47516 * 60.00432 * 1 2 3 26 26 H 1.09006 * 109.47318 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47213 * 239.99982 * 2 1 3 28 28 H 1.09002 * 109.47516 * 119.99568 * 2 1 3 29 29 H 1.08009 * 119.92624 * 0.02562 * 4 3 2 30 30 H 1.07999 * 120.07969 * 179.70905 * 5 4 3 31 31 H 0.97001 * 119.99581 * 0.02562 * 9 7 6 32 32 H 1.08997 * 109.47144 * 299.99783 * 10 9 7 33 33 H 1.08996 * 109.47163 * 60.00031 * 10 9 7 34 34 H 1.09004 * 109.47402 * 300.00094 * 11 10 9 35 35 H 1.09007 * 109.47419 * 60.00122 * 11 10 9 36 36 H 0.97007 * 119.99751 * 180.02562 * 15 14 12 37 37 H 1.07991 * 120.07337 * 180.02562 * 20 6 5 38 38 H 1.09001 * 109.46665 * 145.00124 * 22 21 20 39 39 H 1.08993 * 109.47304 * 24.99680 * 22 21 20 40 40 H 1.09000 * 109.47050 * 180.02562 * 23 22 21 41 41 H 1.09001 * 109.46801 * 300.00442 * 23 22 21 42 42 H 1.09001 * 109.46998 * 60.00038 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3555 2.0372 -1.1961 5 6 2.8216 3.3354 -1.2027 6 6 2.9615 4.0296 0.0004 7 6 3.4598 5.4214 0.0009 8 8 3.5802 6.0235 1.0499 9 7 3.7808 6.0227 -1.1619 10 6 4.2741 7.4021 -1.1614 11 6 4.5626 7.8410 -2.5984 12 6 5.0706 9.2598 -2.5980 13 1 5.1767 9.7951 -1.6660 14 6 5.3991 9.8749 -3.7875 15 7 5.2694 9.2232 -4.9224 16 14 6.0295 11.6332 -3.7869 17 1 7.2776 11.7114 -2.9859 18 1 6.3094 12.0593 -5.1816 19 1 5.0032 12.5268 -3.1923 20 6 2.6278 3.4042 1.2026 21 6 2.1627 2.1051 1.1951 22 6 1.8024 1.4281 2.4924 23 6 2.9967 0.6116 2.9904 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.2468 1.4991 -2.1262 30 1 3.0780 3.8137 -2.1364 31 1 3.6844 5.5424 -1.9990 32 1 3.5201 8.0575 -0.7254 33 1 5.1900 7.4603 -0.5734 34 1 5.3167 7.1856 -3.0341 35 1 3.6469 7.7829 -3.1870 36 1 5.5008 9.6558 -5.7593 37 1 2.7333 3.9359 2.1367 38 1 0.9512 0.7664 2.3326 39 1 1.5424 2.1818 3.2356 40 1 2.7360 0.1216 3.9285 41 1 3.2569 -0.1420 2.2472 42 1 3.8480 1.2734 3.1501 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320029720.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:34 Heat of formation + Delta-G solvation = -47.648385 kcal Electronic energy + Delta-G solvation = -20339.455925 eV Core-core repulsion = 17282.915967 eV Total energy + Delta-G solvation = -3056.539958 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.27494 -38.70309 -34.91732 -34.81099 -33.62486 -32.83019 -30.25753 -29.92127 -28.82149 -25.34332 -24.58008 -23.53864 -21.81986 -21.65511 -20.94846 -19.55531 -17.37915 -16.57318 -16.21367 -15.65780 -15.07046 -14.91333 -14.71173 -14.41717 -14.05615 -13.82413 -13.77583 -13.45425 -13.34754 -13.08385 -12.64446 -12.58031 -12.28632 -12.03308 -11.68846 -11.54128 -11.32764 -11.21413 -11.01753 -10.96152 -10.77946 -10.65652 -10.32885 -9.84626 -9.48396 -9.22795 -8.92125 -8.75897 -8.51018 -8.32961 -6.09383 -4.12282 0.86057 1.29052 3.03369 3.31462 3.35124 3.38104 3.66077 3.91571 4.41737 4.46779 4.55551 4.69474 4.75863 4.93993 5.05582 5.09459 5.13533 5.16898 5.27464 5.27614 5.38701 5.42117 5.54271 5.60195 5.68038 5.78154 5.84034 5.89695 5.97991 6.07307 6.27379 6.28348 6.34729 6.41848 6.50012 6.73309 6.82026 6.91358 7.51058 7.61060 7.88597 8.00220 8.27534 8.62933 8.93346 9.52476 11.02241 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.035967 B = 0.002951 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.314345 B = 9484.520845 C =10057.678314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.090 4.090 3 C -0.062 4.062 4 C -0.123 4.123 5 C -0.088 4.088 6 C -0.128 4.128 7 C 0.547 3.453 8 O -0.549 6.549 9 N -0.716 5.716 10 C 0.121 3.879 11 C 0.012 3.988 12 C -0.522 4.522 13 H 0.059 0.941 14 C 0.059 3.941 15 N -0.895 5.895 16 Si 0.898 3.102 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.275 1.275 20 C -0.058 4.058 21 C -0.091 4.091 22 C -0.087 4.087 23 C -0.149 4.149 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.127 0.873 30 H 0.129 0.871 31 H 0.397 0.603 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.023 0.977 35 H 0.023 0.977 36 H 0.263 0.737 37 H 0.134 0.866 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.057 0.943 41 H 0.056 0.944 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.465 -21.196 9.589 24.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.127 4.127 3 C -0.062 4.062 4 C -0.141 4.141 5 C -0.107 4.107 6 C -0.131 4.131 7 C 0.334 3.666 8 O -0.428 6.428 9 N -0.366 5.366 10 C -0.001 4.001 11 C -0.025 4.025 12 C -0.561 4.561 13 H 0.077 0.923 14 C -0.143 4.143 15 N -0.533 5.533 16 Si 0.725 3.275 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.201 1.201 20 C -0.077 4.077 21 C -0.092 4.092 22 C -0.124 4.124 23 C -0.206 4.206 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.090 0.910 28 H 0.095 0.905 29 H 0.144 0.856 30 H 0.146 0.854 31 H 0.231 0.769 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.041 0.959 35 H 0.041 0.959 36 H 0.072 0.928 37 H 0.152 0.848 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.334 -20.701 10.123 24.504 hybrid contribution 0.370 0.852 -0.702 1.165 sum -7.964 -19.849 9.421 23.370 Atomic orbital electron populations 1.21766 0.94604 1.01709 1.02458 1.20644 0.96312 0.92676 1.03103 1.19900 0.97695 0.96014 0.92623 1.20949 1.00606 0.94935 0.97637 1.21363 0.97357 0.94596 0.97334 1.20095 1.03900 0.94765 0.94334 1.18303 0.78112 0.85869 0.84329 1.90733 1.54588 1.66061 1.31436 1.46277 1.65429 1.16692 1.08188 1.21759 0.98032 0.78732 1.01570 1.19326 0.97426 0.96910 0.88828 1.21013 1.44160 0.97795 0.93130 0.92268 1.24995 0.95493 0.98300 0.95483 1.69948 1.48355 1.37307 0.97724 0.86562 0.79476 0.84454 0.76983 1.20099 1.21232 1.20095 1.21140 0.95142 0.93573 0.97853 1.19669 1.00666 0.93972 0.94847 1.20589 0.98718 0.99312 0.93781 1.21779 0.98085 0.99984 1.00728 0.92360 0.92385 0.92369 0.90962 0.90502 0.85555 0.85358 0.76852 0.92397 0.92396 0.95914 0.95917 0.92780 0.84832 0.90625 0.90901 0.92390 0.92490 0.92330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.72 37.15 0.36 -0.62 16 2 C -0.09 -0.66 5.37 -27.88 -0.15 -0.81 16 3 C -0.06 -0.62 5.14 -104.53 -0.54 -1.16 16 4 C -0.12 -1.29 9.66 -39.64 -0.38 -1.68 16 5 C -0.09 -1.09 9.54 -39.19 -0.37 -1.46 16 6 C -0.13 -1.90 5.87 -104.97 -0.62 -2.52 16 7 C 0.55 10.10 7.77 -12.33 -0.10 10.00 16 8 O -0.55 -11.93 16.35 5.32 0.09 -11.84 16 9 N -0.72 -13.18 5.51 -61.26 -0.34 -13.52 16 10 C 0.12 2.65 5.61 -4.05 -0.02 2.62 16 11 C 0.01 0.31 5.09 -27.89 -0.14 0.17 16 12 C -0.52 -14.61 9.11 -34.44 -0.31 -14.92 16 13 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 14 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 15 N -0.89 -26.23 13.29 55.43 0.74 -25.49 16 16 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 C -0.06 -0.79 9.22 -39.18 -0.36 -1.15 16 21 C -0.09 -0.99 5.13 -104.68 -0.54 -1.53 16 22 C -0.09 -0.72 5.38 -27.88 -0.15 -0.87 16 23 C -0.15 -1.12 9.72 37.16 0.36 -0.76 16 24 H 0.06 0.40 6.78 -51.93 -0.35 0.05 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.07 0.47 8.05 -51.93 -0.42 0.05 16 28 H 0.08 0.51 5.57 -51.93 -0.29 0.22 16 29 H 0.13 1.04 8.06 -52.48 -0.42 0.62 16 30 H 0.13 1.42 6.41 -52.49 -0.34 1.09 16 31 H 0.40 6.33 6.51 -40.82 -0.27 6.06 16 32 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 33 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.02 0.59 8.14 -51.92 -0.42 0.17 16 36 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 37 H 0.13 1.85 7.65 -52.49 -0.40 1.45 16 38 H 0.08 0.54 5.61 -51.93 -0.29 0.24 16 39 H 0.07 0.60 8.05 -51.93 -0.42 0.18 16 40 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.06 0.41 6.76 -51.93 -0.35 0.06 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 344.41 15.07 5.19 5.19 Total: -1.00 -31.84 344.41 -8.87 -40.71 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -6.47 Total: 1.59 kcal Atomic # 6 Polarization: -10.05 SS G_CDS: -3.06 Total: -13.11 kcal Atomic # 7 Polarization: -39.41 SS G_CDS: 0.40 Total: -39.01 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: 0.09 Total: -11.84 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.84 -8.87 -40.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320029720.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.939 kcal (2) G-P(sol) polarization free energy of solvation -31.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds