Wall clock time and date at job start Mon Mar 30 2020 02:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50706 * 109.47109 * 2 1 4 4 C 1.38386 * 119.85319 * 265.25233 * 3 2 1 5 5 C 1.37928 * 120.14668 * 180.29257 * 4 3 2 6 6 C 1.39600 * 119.85418 * 359.72756 * 5 4 3 7 7 C 1.47839 * 120.14742 * 180.02562 * 6 5 4 8 8 O 1.21556 * 120.00066 * 179.97438 * 7 6 5 9 9 N 1.34780 * 120.00238 * 359.97438 * 7 6 5 10 10 C 1.46494 * 120.00224 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.47164 * 179.97438 * 10 9 7 12 12 C 1.50695 * 109.47510 * 180.02562 * 11 10 9 13 13 H 1.08010 * 119.99852 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00677 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99538 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00638 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.47153 * 59.99284 * 16 14 12 18 18 H 1.48501 * 109.47593 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.46798 * 300.00167 * 16 14 12 20 20 C 1.39563 * 119.70871 * 359.97438 * 6 5 4 21 21 C 1.37983 * 119.85110 * 0.02562 * 20 6 5 22 22 C 1.50698 * 119.92312 * 179.97438 * 21 20 6 23 23 C 1.53006 * 109.47184 * 264.99735 * 22 21 20 24 24 H 1.08998 * 109.47213 * 300.00018 * 1 2 3 25 25 H 1.09002 * 109.47516 * 60.00432 * 1 2 3 26 26 H 1.09006 * 109.47318 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47213 * 239.99982 * 2 1 3 28 28 H 1.09002 * 109.47516 * 119.99568 * 2 1 3 29 29 H 1.08009 * 119.92624 * 0.02562 * 4 3 2 30 30 H 1.07999 * 120.07969 * 179.70905 * 5 4 3 31 31 H 0.97001 * 119.99581 * 0.02562 * 9 7 6 32 32 H 1.08997 * 109.47144 * 299.99783 * 10 9 7 33 33 H 1.08996 * 109.47163 * 60.00031 * 10 9 7 34 34 H 1.09004 * 109.47402 * 300.00094 * 11 10 9 35 35 H 1.09007 * 109.47419 * 60.00122 * 11 10 9 36 36 H 0.97007 * 119.99751 * 180.02562 * 15 14 12 37 37 H 1.07991 * 120.07337 * 180.02562 * 20 6 5 38 38 H 1.09001 * 109.46665 * 145.00124 * 22 21 20 39 39 H 1.08993 * 109.47304 * 24.99680 * 22 21 20 40 40 H 1.09000 * 109.47050 * 180.02562 * 23 22 21 41 41 H 1.09001 * 109.46801 * 300.00442 * 23 22 21 42 42 H 1.09001 * 109.46998 * 60.00038 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3555 2.0372 -1.1961 5 6 2.8216 3.3354 -1.2027 6 6 2.9615 4.0296 0.0004 7 6 3.4598 5.4214 0.0009 8 8 3.5802 6.0235 1.0499 9 7 3.7808 6.0227 -1.1619 10 6 4.2741 7.4021 -1.1614 11 6 4.5626 7.8410 -2.5984 12 6 5.0706 9.2598 -2.5980 13 1 5.1767 9.7951 -1.6660 14 6 5.3991 9.8749 -3.7875 15 7 5.2694 9.2232 -4.9224 16 14 6.0295 11.6332 -3.7869 17 1 7.2776 11.7114 -2.9859 18 1 6.3094 12.0593 -5.1816 19 1 5.0032 12.5268 -3.1923 20 6 2.6278 3.4042 1.2026 21 6 2.1627 2.1051 1.1951 22 6 1.8024 1.4281 2.4924 23 6 2.9967 0.6116 2.9904 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.2468 1.4991 -2.1262 30 1 3.0780 3.8137 -2.1364 31 1 3.6844 5.5424 -1.9990 32 1 3.5201 8.0575 -0.7254 33 1 5.1900 7.4603 -0.5734 34 1 5.3167 7.1856 -3.0341 35 1 3.6469 7.7829 -3.1870 36 1 5.5008 9.6558 -5.7593 37 1 2.7333 3.9359 2.1367 38 1 0.9512 0.7664 2.3326 39 1 1.5424 2.1818 3.2356 40 1 2.7360 0.1216 3.9285 41 1 3.2569 -0.1420 2.2472 42 1 3.8480 1.2734 3.1501 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320029720.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:33 Heat of formation + Delta-G solvation = -65.660522 kcal Electronic energy + Delta-G solvation = -20340.236990 eV Core-core repulsion = 17282.915967 eV Total energy + Delta-G solvation = -3057.321022 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.39442 -39.97082 -36.68801 -35.71336 -34.81480 -34.32497 -31.84351 -30.84454 -29.95515 -26.98848 -25.57615 -24.57569 -23.03200 -22.64158 -22.46669 -20.78048 -18.69399 -18.46519 -17.38064 -16.60738 -16.53559 -16.42420 -16.34555 -15.66294 -15.04749 -14.76650 -14.66649 -14.60271 -14.43122 -14.28832 -14.12626 -13.46812 -13.29748 -13.17963 -12.95919 -12.77527 -12.56351 -12.51794 -12.25950 -12.11453 -12.04013 -11.73853 -11.68768 -11.48991 -11.44645 -10.95448 -10.62064 -10.17066 -9.83388 -9.57496 -8.25695 -6.36531 -0.17470 0.37328 1.40844 1.43343 1.51364 1.79785 2.16977 2.43009 2.81576 3.08915 3.63756 3.71979 3.85742 3.95476 4.13260 4.21168 4.35197 4.43943 4.48515 4.48946 4.54700 4.55335 4.60328 4.78063 4.79796 4.88145 5.01746 5.07260 5.09192 5.12349 5.20665 5.23306 5.33335 5.35918 5.43829 5.47776 5.51027 5.53979 5.65578 5.75482 5.95457 6.13278 6.53233 6.75852 7.15178 7.32724 8.86090 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.035967 B = 0.002951 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.314345 B = 9484.520845 C =10057.678314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.089 4.089 3 C -0.053 4.053 4 C -0.122 4.122 5 C -0.090 4.090 6 C -0.154 4.154 7 C 0.547 3.453 8 O -0.590 6.590 9 N -0.711 5.711 10 C 0.140 3.860 11 C 0.024 3.976 12 C -0.550 4.550 13 H 0.059 0.941 14 C 0.008 3.992 15 N -0.926 5.926 16 Si 0.966 3.034 17 H -0.269 1.269 18 H -0.279 1.279 19 H -0.268 1.268 20 C -0.072 4.072 21 C -0.091 4.091 22 C -0.086 4.086 23 C -0.147 4.147 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.075 0.925 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.156 0.844 30 H 0.137 0.863 31 H 0.409 0.591 32 H 0.048 0.952 33 H 0.048 0.952 34 H 0.010 0.990 35 H 0.010 0.990 36 H 0.267 0.733 37 H 0.119 0.881 38 H 0.095 0.905 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.063 0.937 42 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.126 -23.132 9.472 26.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.126 4.126 3 C -0.053 4.053 4 C -0.140 4.140 5 C -0.109 4.109 6 C -0.157 4.157 7 C 0.336 3.664 8 O -0.472 6.472 9 N -0.362 5.362 10 C 0.016 3.984 11 C -0.014 4.014 12 C -0.588 4.588 13 H 0.077 0.923 14 C -0.191 4.191 15 N -0.565 5.565 16 Si 0.790 3.210 17 H -0.193 1.193 18 H -0.204 1.204 19 H -0.193 1.193 20 C -0.092 4.092 21 C -0.091 4.091 22 C -0.123 4.123 23 C -0.204 4.204 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.094 0.906 27 H 0.105 0.895 28 H 0.107 0.893 29 H 0.173 0.827 30 H 0.155 0.845 31 H 0.246 0.754 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.028 0.972 35 H 0.028 0.972 36 H 0.075 0.925 37 H 0.137 0.863 38 H 0.113 0.887 39 H 0.088 0.912 40 H 0.093 0.907 41 H 0.082 0.918 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -9.005 -22.664 9.997 26.357 hybrid contribution 0.527 1.330 -0.657 1.574 sum -8.478 -21.334 9.340 24.784 Atomic orbital electron populations 1.21767 0.93891 1.02769 1.02052 1.20741 0.96743 0.90615 1.04496 1.20329 0.95709 0.97346 0.91930 1.21304 0.99394 0.94102 0.99162 1.21505 0.97325 0.95470 0.96615 1.19848 1.06758 0.92977 0.96072 1.18888 0.76994 0.87178 0.83326 1.90695 1.56391 1.67417 1.32705 1.46075 1.65471 1.15477 1.09184 1.21286 0.97378 0.80539 0.99177 1.19129 0.96129 0.95836 0.90266 1.21429 1.44709 0.99215 0.93449 0.92304 1.25876 0.95485 1.02738 0.95008 1.70052 1.48988 1.39147 0.98333 0.85486 0.79075 0.79063 0.77354 1.19348 1.20432 1.19336 1.21168 0.96219 0.94877 0.96887 1.19941 0.99668 0.92908 0.96616 1.20660 0.99724 0.99526 0.92412 1.21771 0.97066 0.99716 1.01820 0.92713 0.92922 0.90615 0.89456 0.89329 0.82672 0.84507 0.75386 0.93392 0.93398 0.97213 0.97212 0.92455 0.86260 0.88696 0.91167 0.90662 0.91771 0.93914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.72 71.98 0.70 -0.75 16 2 C -0.09 -0.97 5.37 29.85 0.16 -0.81 16 3 C -0.05 -0.92 5.14 -19.80 -0.10 -1.02 16 4 C -0.12 -2.27 9.66 22.23 0.21 -2.05 16 5 C -0.09 -2.17 9.54 22.53 0.21 -1.95 16 6 C -0.15 -4.65 5.87 -20.09 -0.12 -4.77 16 7 C 0.55 20.99 7.77 86.78 0.67 21.66 16 8 O -0.59 -26.93 16.35 -3.89 -0.06 -26.99 16 9 N -0.71 -27.05 5.51 -465.99 -2.57 -29.62 16 10 C 0.14 6.32 5.61 86.38 0.48 6.81 16 11 C 0.02 1.23 5.09 29.85 0.15 1.38 16 12 C -0.55 -31.25 9.11 25.60 0.23 -31.02 16 13 H 0.06 3.27 7.74 -2.91 -0.02 3.24 16 14 C 0.01 0.45 5.46 84.65 0.46 0.91 16 15 N -0.93 -54.66 13.29 21.45 0.28 -54.37 16 16 Si 0.97 44.01 29.54 68.60 2.03 46.04 16 17 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 18 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 19 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 20 C -0.07 -1.99 9.22 22.53 0.21 -1.79 16 21 C -0.09 -1.87 5.13 -19.90 -0.10 -1.97 16 22 C -0.09 -1.28 5.38 29.85 0.16 -1.12 16 23 C -0.15 -1.92 9.72 71.98 0.70 -1.22 16 24 H 0.05 0.58 6.78 -2.39 -0.02 0.57 16 25 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.07 0.51 8.14 -2.38 -0.02 0.49 16 27 H 0.09 0.75 8.05 -2.39 -0.02 0.73 16 28 H 0.09 0.80 5.57 -2.39 -0.01 0.79 16 29 H 0.16 1.99 8.06 -2.91 -0.02 1.96 16 30 H 0.14 2.93 6.41 -2.91 -0.02 2.91 16 31 H 0.41 13.34 6.51 -92.71 -0.60 12.74 16 32 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 35 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 36 H 0.27 14.78 8.31 -92.70 -0.77 14.01 16 37 H 0.12 3.53 7.65 -2.92 -0.02 3.50 16 38 H 0.09 1.06 5.61 -2.39 -0.01 1.05 16 39 H 0.07 1.09 8.05 -2.39 -0.02 1.07 16 40 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.06 0.75 6.76 -2.39 -0.02 0.73 16 42 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -69.47 344.41 4.13 -65.34 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: 0.41 Total: 17.31 kcal Atomic # 6 Polarization: -21.75 SS G_CDS: 4.04 Total: -17.71 kcal Atomic # 7 Polarization: -81.71 SS G_CDS: -2.28 Total: -83.99 kcal Atomic # 8 Polarization: -26.93 SS G_CDS: -0.06 Total: -26.99 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -69.47 4.13 -65.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320029720.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.320 kcal (2) G-P(sol) polarization free energy of solvation -69.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds