Wall clock time and date at job start Mon Mar 30 2020 02:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50703 * 109.47284 * 2 1 4 4 C 1.38377 * 119.85534 * 265.23457 * 3 2 1 5 5 C 1.37932 * 120.14673 * 180.27297 * 4 3 2 6 6 C 1.39595 * 119.85253 * 359.74594 * 5 4 3 7 7 C 1.47852 * 120.14627 * 180.02562 * 6 5 4 8 8 O 1.21545 * 119.99946 * 140.79148 * 7 6 5 9 9 N 1.34780 * 119.99477 * 320.78995 * 7 6 5 10 10 C 1.46498 * 120.00510 * 4.84665 * 9 7 6 11 11 C 1.46501 * 119.99501 * 184.84605 * 9 7 6 12 12 C 1.50700 * 109.47064 * 90.00036 * 11 9 7 13 13 H 1.07998 * 120.00207 * 0.02562 * 12 11 9 14 14 C 1.37875 * 119.99808 * 179.97438 * 12 11 9 15 15 N 1.31514 * 120.00191 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 120.00010 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46943 * 90.00263 * 16 14 12 18 18 H 1.48492 * 109.47446 * 210.00200 * 16 14 12 19 19 H 1.48502 * 109.47084 * 330.00810 * 16 14 12 20 20 C 1.39559 * 119.71215 * 359.97438 * 6 5 4 21 21 C 1.37976 * 119.84921 * 0.02562 * 20 6 5 22 22 C 1.50706 * 119.92654 * 179.97438 * 21 20 6 23 23 C 1.53001 * 109.46837 * 264.99800 * 22 21 20 24 24 H 1.09004 * 109.46777 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47202 * 300.00262 * 1 2 3 26 26 H 1.09001 * 109.46957 * 59.99753 * 1 2 3 27 27 H 1.08996 * 109.47202 * 239.99738 * 2 1 3 28 28 H 1.08998 * 109.47259 * 119.99826 * 2 1 3 29 29 H 1.08004 * 119.92849 * 359.97438 * 4 3 2 30 30 H 1.08005 * 120.07687 * 179.71960 * 5 4 3 31 31 H 1.08993 * 109.47137 * 85.63241 * 10 9 7 32 32 H 1.08996 * 109.47291 * 205.63866 * 10 9 7 33 33 H 1.09002 * 109.47126 * 325.63558 * 10 9 7 34 34 H 1.08996 * 109.47092 * 210.00071 * 11 9 7 35 35 H 1.09000 * 109.47196 * 329.99893 * 11 9 7 36 36 H 0.97006 * 119.99719 * 180.02562 * 15 14 12 37 37 H 1.08000 * 120.07710 * 180.02562 * 20 6 5 38 38 H 1.08997 * 109.47066 * 144.99512 * 22 21 20 39 39 H 1.08998 * 109.47017 * 24.99226 * 22 21 20 40 40 H 1.08999 * 109.47384 * 180.02562 * 23 22 21 41 41 H 1.09007 * 109.46696 * 299.99792 * 23 22 21 42 42 H 1.08996 * 109.47536 * 59.99437 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3560 2.0370 -1.1960 5 6 2.8217 3.3354 -1.2025 6 6 2.9612 4.0296 0.0005 7 6 3.4593 5.4217 0.0010 8 8 2.9744 6.2403 0.7574 9 7 4.4509 5.7828 -0.8373 10 6 4.9627 4.8263 -1.8218 11 6 5.0171 7.1320 -0.7638 12 6 6.1730 7.1398 0.2031 13 1 6.4577 6.2306 0.7117 14 6 6.8677 8.3074 0.4376 15 7 6.5213 9.4145 -0.1821 16 14 8.3000 8.3173 1.6367 17 1 9.5569 8.0080 0.9089 18 1 8.4096 9.6578 2.2660 19 1 8.0723 7.2938 2.6883 20 6 2.6275 3.4043 1.2027 21 6 2.1628 2.1051 1.1952 22 6 1.8025 1.4280 2.4924 23 6 2.9970 0.6119 2.9906 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 2.2483 1.4986 -2.1260 30 1 3.0783 3.8137 -2.1362 31 1 4.3453 4.8634 -2.7193 32 1 5.9908 5.0827 -2.0772 33 1 4.9326 3.8211 -1.4015 34 1 5.3672 7.4334 -1.7511 35 1 4.2521 7.8289 -0.4213 36 1 7.0103 10.2359 -0.0173 37 1 2.7328 3.9360 2.1368 38 1 0.9514 0.7661 2.3326 39 1 1.5422 2.1816 3.2356 40 1 2.7363 0.1217 3.9286 41 1 3.2573 -0.1418 2.2473 42 1 3.8481 1.2738 3.1503 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320623436.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:37 Heat of formation + Delta-G solvation = -43.906070 kcal Electronic energy + Delta-G solvation = -21214.654445 eV Core-core repulsion = 18158.276766 eV Total energy + Delta-G solvation = -3056.377679 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.44107 -39.89195 -36.76989 -35.72448 -34.63549 -34.31150 -30.95780 -30.70964 -29.25335 -27.61470 -25.89709 -25.06148 -24.05772 -22.46940 -21.95165 -20.22965 -18.74429 -17.91615 -17.55600 -16.88322 -16.73068 -16.25929 -16.01798 -15.39624 -14.81521 -14.66551 -14.62569 -14.46153 -14.23886 -14.12828 -13.82240 -13.54322 -13.38146 -13.24207 -13.05513 -12.90613 -12.75983 -12.61902 -12.28895 -12.23829 -12.10444 -12.01084 -11.76777 -11.65045 -11.41036 -10.74268 -10.68105 -9.82408 -9.54727 -9.45128 -8.26723 -6.42504 0.00259 0.41055 1.33698 1.37153 1.47590 1.80869 2.25584 2.39595 2.80035 3.02499 3.59162 3.76556 3.87788 3.95400 4.15002 4.22461 4.33848 4.44839 4.48966 4.57358 4.58088 4.60743 4.63819 4.78903 4.82989 4.88999 4.97627 5.03313 5.07177 5.13372 5.13905 5.16418 5.26304 5.36193 5.41268 5.48955 5.51662 5.53131 5.69622 5.77404 6.00231 6.01397 6.61743 6.67697 7.20082 7.35591 8.80671 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.025379 B = 0.004222 C = 0.003906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.002353 B = 6630.951583 C = 7166.878842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.086 4.086 3 C -0.059 4.059 4 C -0.116 4.116 5 C -0.096 4.096 6 C -0.143 4.143 7 C 0.537 3.463 8 O -0.600 6.600 9 N -0.601 5.601 10 C 0.075 3.925 11 C 0.258 3.742 12 C -0.549 4.549 13 H 0.051 0.949 14 C 0.009 3.991 15 N -0.927 5.927 16 Si 0.971 3.029 17 H -0.260 1.260 18 H -0.278 1.278 19 H -0.275 1.275 20 C -0.086 4.086 21 C -0.088 4.088 22 C -0.086 4.086 23 C -0.145 4.145 24 H 0.076 0.924 25 H 0.050 0.950 26 H 0.053 0.947 27 H 0.091 0.909 28 H 0.086 0.914 29 H 0.162 0.838 30 H 0.147 0.853 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.030 0.970 35 H -0.001 1.001 36 H 0.269 0.731 37 H 0.103 0.897 38 H 0.097 0.903 39 H 0.063 0.937 40 H 0.075 0.925 41 H 0.067 0.933 42 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.855 -24.227 -2.165 25.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.123 4.123 3 C -0.060 4.060 4 C -0.133 4.133 5 C -0.115 4.115 6 C -0.146 4.146 7 C 0.327 3.673 8 O -0.483 6.483 9 N -0.331 5.331 10 C -0.067 4.067 11 C 0.137 3.863 12 C -0.587 4.587 13 H 0.069 0.931 14 C -0.190 4.190 15 N -0.566 5.566 16 Si 0.794 3.206 17 H -0.185 1.185 18 H -0.203 1.203 19 H -0.200 1.200 20 C -0.105 4.105 21 C -0.088 4.088 22 C -0.123 4.123 23 C -0.202 4.202 24 H 0.095 0.905 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.109 0.891 28 H 0.104 0.896 29 H 0.180 0.820 30 H 0.165 0.835 31 H 0.099 0.901 32 H 0.089 0.911 33 H 0.104 0.896 34 H 0.048 0.952 35 H 0.017 0.983 36 H 0.078 0.922 37 H 0.121 0.879 38 H 0.116 0.884 39 H 0.082 0.918 40 H 0.094 0.906 41 H 0.086 0.914 42 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -9.023 -23.601 -1.839 25.334 hybrid contribution 0.851 1.309 0.703 1.712 sum -8.172 -22.292 -1.136 23.770 Atomic orbital electron populations 1.21770 0.94045 1.02707 1.01960 1.20716 0.96608 0.90473 1.04529 1.20295 0.96409 0.97440 0.91812 1.21326 0.98973 0.93900 0.99120 1.21764 0.97680 0.95272 0.96751 1.19852 1.05566 0.92702 0.96485 1.19103 0.79695 0.88691 0.79827 1.90681 1.60281 1.54567 1.42751 1.48080 1.34732 1.15281 1.34959 1.22255 1.00346 0.92726 0.91326 1.18837 0.92222 0.78783 0.96467 1.21677 1.15148 0.95810 1.26092 0.93119 1.25883 1.00590 0.94649 0.97903 1.70053 1.42053 1.00632 1.43851 0.85375 0.78987 0.77557 0.78652 1.18467 1.20298 1.19977 1.21045 0.97764 0.95349 0.96376 1.19875 0.99524 0.92535 0.96836 1.20654 0.99822 0.99385 0.92465 1.21761 0.96904 0.99677 1.01907 0.90540 0.93081 0.92802 0.89073 0.89569 0.82005 0.83518 0.90118 0.91075 0.89565 0.95208 0.98307 0.92213 0.87902 0.88440 0.91834 0.90646 0.91371 0.94319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.72 71.98 0.70 -0.95 16 2 C -0.09 -1.05 5.38 29.85 0.16 -0.89 16 3 C -0.06 -1.16 5.14 -19.81 -0.10 -1.27 16 4 C -0.12 -2.29 9.66 22.23 0.21 -2.07 16 5 C -0.10 -2.56 7.57 22.53 0.17 -2.39 16 6 C -0.14 -5.19 5.24 -20.09 -0.11 -5.29 16 7 C 0.54 25.73 7.35 86.79 0.64 26.37 16 8 O -0.60 -34.94 16.47 -3.86 -0.06 -35.01 16 9 N -0.60 -27.97 2.86 -854.59 -2.44 -30.41 16 10 C 0.08 2.47 8.88 127.77 1.13 3.60 16 11 C 0.26 14.70 5.18 85.63 0.44 15.15 16 12 C -0.55 -33.07 9.39 25.60 0.24 -32.83 16 13 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 14 C 0.01 0.53 5.46 84.65 0.46 1.00 16 15 N -0.93 -57.27 13.29 21.45 0.28 -56.99 16 16 Si 0.97 46.00 29.54 68.60 2.03 48.02 16 17 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 18 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 19 H -0.27 -12.97 7.11 99.48 0.71 -12.26 16 20 C -0.09 -2.91 9.26 22.53 0.21 -2.70 16 21 C -0.09 -2.15 5.13 -19.90 -0.10 -2.25 16 22 C -0.09 -1.62 5.38 29.85 0.16 -1.46 16 23 C -0.15 -2.41 9.72 71.98 0.70 -1.71 16 24 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 25 H 0.05 0.65 6.78 -2.39 -0.02 0.63 16 26 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.09 0.81 8.05 -2.39 -0.02 0.79 16 28 H 0.09 0.92 5.57 -2.39 -0.01 0.91 16 29 H 0.16 2.00 8.06 -2.91 -0.02 1.98 16 30 H 0.15 3.43 5.30 -2.91 -0.02 3.41 16 31 H 0.08 2.09 6.90 -2.39 -0.02 2.08 16 32 H 0.07 2.38 8.04 -2.39 -0.02 2.36 16 33 H 0.09 2.46 5.81 -2.39 -0.01 2.44 16 34 H 0.03 1.69 8.07 -2.39 -0.02 1.67 16 35 H 0.00 -0.08 7.36 -2.39 -0.02 -0.10 16 36 H 0.27 15.48 8.31 -92.70 -0.77 14.71 16 37 H 0.10 3.86 8.05 -2.91 -0.02 3.84 16 38 H 0.10 1.40 5.61 -2.39 -0.01 1.38 16 39 H 0.06 1.30 8.05 -2.39 -0.02 1.28 16 40 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.07 0.97 6.76 -2.38 -0.02 0.95 16 42 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -78.60 338.99 5.73 -72.87 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: 1.00 Total: 9.21 kcal Atomic # 6 Polarization: -12.62 SS G_CDS: 4.92 Total: -7.70 kcal Atomic # 7 Polarization: -85.24 SS G_CDS: -2.16 Total: -87.40 kcal Atomic # 8 Polarization: -34.94 SS G_CDS: -0.06 Total: -35.01 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.02 kcal Total: -78.60 5.73 -72.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320623436.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.964 kcal (2) G-P(sol) polarization free energy of solvation -78.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds