Wall clock time and date at job start Mon Mar 30 2020 03:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53007 * 109.46768 * 2 1 4 4 C 1.52995 * 109.47086 * 119.99806 * 2 1 3 5 5 H 1.08996 * 112.85480 * 311.19703 * 4 2 1 6 6 C 1.53786 * 113.68796 * 82.46657 * 4 2 1 7 7 C 1.53784 * 87.08029 * 139.98984 * 6 4 2 8 8 C 1.53783 * 113.61075 * 179.97438 * 4 2 1 9 9 H 1.08992 * 113.61670 * 334.48214 * 8 4 2 10 10 N 1.46503 * 113.61382 * 105.39455 * 8 4 2 11 11 C 1.39781 * 119.99963 * 205.00320 * 10 8 4 12 12 C 1.38948 * 120.00760 * 359.71152 * 11 10 8 13 13 C 1.38010 * 119.99539 * 179.77388 * 12 11 10 14 14 C 1.38897 * 120.00244 * 0.50719 * 13 12 11 15 15 O 1.35802 * 119.99008 * 179.76323 * 14 13 12 16 16 C 1.34808 * 116.99792 * 174.43228 * 15 14 13 17 17 H 1.08001 * 120.00211 * 5.06982 * 16 15 14 18 18 C 1.38624 * 120.00059 * 185.05504 * 16 15 14 19 19 N 1.31584 * 119.99974 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00054 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47104 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47349 * 120.00309 * 20 18 16 23 23 H 1.48499 * 109.47221 * 240.00613 * 20 18 16 24 24 C 1.38891 * 120.01367 * 359.75183 * 14 13 12 25 25 C 1.38012 * 120.00963 * 359.97438 * 24 14 13 26 26 H 1.09000 * 109.46873 * 300.00062 * 1 2 3 27 27 H 1.09002 * 109.47088 * 60.00093 * 1 2 3 28 28 H 1.08999 * 109.46784 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46934 * 240.00487 * 2 1 3 30 30 H 1.08995 * 109.46869 * 299.99795 * 3 2 1 31 31 H 1.08999 * 109.46995 * 60.00524 * 3 2 1 32 32 H 1.09000 * 109.46533 * 179.97438 * 3 2 1 33 33 H 1.09000 * 113.61571 * 254.53885 * 6 4 2 34 34 H 1.09003 * 113.61522 * 25.44215 * 6 4 2 35 35 H 1.08996 * 113.61348 * 220.02152 * 7 6 4 36 36 H 1.09001 * 113.61261 * 89.11411 * 7 6 4 37 37 H 0.97004 * 120.00058 * 24.98793 * 10 8 4 38 38 H 1.08007 * 119.99797 * 0.02735 * 12 11 10 39 39 H 1.07999 * 119.99719 * 180.23336 * 13 12 11 40 40 H 0.96996 * 119.99720 * 179.97438 * 19 18 16 41 41 H 1.08004 * 119.99759 * 179.97438 * 24 14 13 42 42 H 1.07991 * 120.00655 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.5574 -0.3765 2.1637 6 6 2.0719 -2.2523 1.1090 7 6 3.4107 -2.2150 1.8648 8 6 3.5738 -0.7772 1.3451 9 1 4.0742 -0.7165 0.3787 10 7 4.1340 0.1447 2.3364 11 6 5.4477 0.6025 2.2011 12 6 6.2245 0.1788 1.1298 13 6 7.5200 0.6347 0.9939 14 6 8.0508 1.5088 1.9338 15 8 9.3273 1.9535 1.8024 16 6 9.7435 2.8872 2.6812 17 1 9.1001 3.1880 3.4948 18 6 10.9975 3.4610 2.5408 19 7 11.7814 3.0947 1.5495 20 14 11.5746 4.7543 3.7589 21 1 10.5149 4.9870 4.7729 22 1 12.8100 4.2822 4.4341 23 1 11.8576 6.0216 3.0384 24 6 7.2764 1.9284 3.0077 25 6 5.9789 1.4772 3.1410 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 3.1300 1.4426 0.0005 33 1 1.2757 -2.7575 1.6558 34 1 2.1619 -2.5946 0.0780 35 1 4.1538 -2.9083 1.4709 36 1 3.3027 -2.2786 2.9475 37 1 3.5931 0.4375 3.0865 38 1 5.8130 -0.5042 0.4012 39 1 8.1225 0.3082 0.1592 40 1 12.6588 3.4965 1.4510 41 1 7.6896 2.6078 3.7385 42 1 5.3767 1.8038 3.9758 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324349726.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:09 Heat of formation + Delta-G solvation = 7.413654 kcal Electronic energy + Delta-G solvation = -20825.549299 eV Core-core repulsion = 17771.397011 eV Total energy + Delta-G solvation = -3054.152288 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.94540 -38.71748 -36.62320 -34.43388 -32.94789 -31.89547 -30.15463 -27.64512 -27.05594 -25.49273 -25.31525 -23.99947 -22.03470 -20.94757 -20.30829 -19.64628 -17.77370 -17.09098 -16.32946 -15.81122 -15.25186 -14.47285 -14.38623 -14.11771 -13.83628 -13.55803 -13.39067 -13.02039 -12.98494 -12.53809 -12.43175 -12.38499 -12.24213 -12.09865 -11.67991 -11.50545 -11.43722 -11.17480 -11.00730 -10.92981 -10.75619 -10.49880 -10.33746 -10.23933 -10.14738 -9.19250 -9.09576 -8.39505 -8.13699 -6.34800 -6.29809 -3.87126 2.23769 2.60632 3.19469 3.20788 3.25988 3.90249 4.08059 4.38129 4.50772 4.59662 4.70965 4.87975 4.97585 5.06075 5.22535 5.24914 5.39676 5.43365 5.53847 5.57662 5.63294 5.68366 5.69362 5.75276 5.81129 5.82786 5.90078 6.01107 6.02692 6.18819 6.22992 6.26571 6.28345 6.40559 6.59895 6.90088 6.96383 7.17772 7.35834 7.49346 7.68866 8.04103 8.14644 8.30514 9.16042 9.91197 10.88807 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.035593 B = 0.003286 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.478960 B = 8517.851838 C = 8670.690617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.085 4.085 3 C -0.146 4.146 4 C -0.112 4.112 5 H 0.088 0.912 6 C -0.136 4.136 7 C -0.161 4.161 8 C 0.148 3.852 9 H 0.101 0.899 10 N -0.745 5.745 11 C 0.126 3.874 12 C -0.147 4.147 13 C -0.150 4.150 14 C 0.113 3.887 15 O -0.190 6.190 16 C -0.385 4.385 17 H 0.088 0.912 18 C 0.035 3.965 19 N -0.869 5.869 20 Si 0.937 3.063 21 H -0.268 1.268 22 H -0.278 1.278 23 H -0.278 1.278 24 C -0.190 4.190 25 C -0.144 4.144 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.069 0.931 30 H 0.049 0.951 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.080 0.920 37 H 0.390 0.610 38 H 0.110 0.890 39 H 0.116 0.884 40 H 0.266 0.734 41 H 0.126 0.874 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.223 -7.145 -0.686 21.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.104 4.104 3 C -0.203 4.203 4 C -0.131 4.131 5 H 0.106 0.894 6 C -0.174 4.174 7 C -0.201 4.201 8 C 0.041 3.959 9 H 0.119 0.881 10 N -0.378 5.378 11 C 0.028 3.972 12 C -0.169 4.169 13 C -0.170 4.170 14 C 0.060 3.940 15 O -0.095 6.095 16 C -0.462 4.462 17 H 0.106 0.894 18 C -0.167 4.167 19 N -0.506 5.506 20 Si 0.763 3.237 21 H -0.193 1.193 22 H -0.203 1.203 23 H -0.203 1.203 24 C -0.210 4.210 25 C -0.166 4.166 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.099 0.901 35 H 0.085 0.915 36 H 0.098 0.902 37 H 0.223 0.777 38 H 0.128 0.872 39 H 0.134 0.866 40 H 0.076 0.924 41 H 0.144 0.856 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -19.792 -7.226 -1.075 21.097 hybrid contribution 0.040 0.776 1.010 1.274 sum -19.752 -6.450 -0.064 20.779 Atomic orbital electron populations 1.21811 0.95496 1.01387 1.01500 1.21089 0.95388 0.96555 0.97366 1.21794 1.01966 0.95378 1.01153 1.23098 0.96291 0.95208 0.98535 0.89351 1.22795 0.97972 0.95834 1.00788 1.23518 0.97144 0.98851 1.00577 1.22251 0.92192 0.88224 0.93260 0.88132 1.44228 1.11501 1.52967 1.29078 1.17419 0.85286 0.98057 0.96411 1.20189 0.94062 1.04032 0.98588 1.20028 0.95198 1.01791 0.99963 1.19230 0.86090 0.94947 0.93710 1.83986 1.21259 1.51875 1.52357 1.21279 1.00997 1.16675 1.07282 0.89437 1.25212 0.95415 0.98369 0.97745 1.70060 1.09309 1.41693 1.29567 0.85703 0.78921 0.79700 0.79406 1.19276 1.20343 1.20329 1.20986 0.94448 1.05061 1.00461 1.20231 0.95897 1.01104 0.99351 0.92914 0.92951 0.92875 0.91295 0.93205 0.92974 0.91876 0.91524 0.90135 0.91469 0.90153 0.77676 0.87192 0.86611 0.92390 0.85598 0.87747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 9.19 37.16 0.34 -0.76 16 2 C -0.09 -0.75 2.67 -90.62 -0.24 -0.99 16 3 C -0.15 -1.47 9.00 37.16 0.33 -1.14 16 4 C -0.11 -1.00 2.87 -89.81 -0.26 -1.26 16 5 H 0.09 0.79 8.12 -51.93 -0.42 0.37 16 6 C -0.14 -1.12 7.63 -25.91 -0.20 -1.32 16 7 C -0.16 -1.62 7.88 -25.93 -0.20 -1.83 16 8 C 0.15 1.64 2.63 -67.13 -0.18 1.46 16 9 H 0.10 1.20 6.10 -51.93 -0.32 0.89 16 10 N -0.74 -9.77 5.53 -51.35 -0.28 -10.05 16 11 C 0.13 2.16 6.66 -83.71 -0.56 1.60 16 12 C -0.15 -2.67 9.26 -39.40 -0.36 -3.03 16 13 C -0.15 -3.24 9.98 -39.42 -0.39 -3.63 16 14 C 0.11 2.78 6.65 -39.10 -0.26 2.52 16 15 O -0.19 -5.56 9.76 -0.05 0.00 -5.57 16 16 C -0.39 -11.08 9.48 30.87 0.29 -10.78 16 17 H 0.09 2.34 5.20 -52.49 -0.27 2.06 16 18 C 0.04 1.00 5.49 -17.52 -0.10 0.90 16 19 N -0.87 -26.23 13.67 55.48 0.76 -25.48 16 20 Si 0.94 21.13 29.55 -169.99 -5.02 16.10 16 21 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 22 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 23 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 24 C -0.19 -4.21 9.16 -39.42 -0.36 -4.57 16 25 C -0.14 -2.67 9.89 -39.40 -0.39 -3.06 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.60 7.95 -51.93 -0.41 0.19 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.76 7.45 -51.93 -0.39 0.38 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.62 7.97 -51.93 -0.41 0.21 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.39 4.57 8.74 -40.82 -0.36 4.22 16 38 H 0.11 1.72 6.05 -52.48 -0.32 1.40 16 39 H 0.12 2.42 8.06 -52.49 -0.42 1.99 16 40 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 41 H 0.13 2.81 5.63 -52.48 -0.30 2.52 16 42 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 341.04 15.07 5.14 5.14 Total: -1.00 -30.78 341.04 -8.50 -39.28 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -6.56 Total: 6.44 kcal Atomic # 6 Polarization: -23.34 SS G_CDS: -2.53 Total: -25.87 kcal Atomic # 7 Polarization: -36.00 SS G_CDS: 0.47 Total: -35.52 kcal Atomic # 8 Polarization: -5.56 SS G_CDS: 0.00 Total: -5.57 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.78 -8.50 -39.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324349726.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.692 kcal (2) G-P(sol) polarization free energy of solvation -30.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds