Wall clock time and date at job start Mon Mar 30 2020 03:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53007 * 109.46768 * 2 1 4 4 C 1.52995 * 109.47086 * 119.99806 * 2 1 3 5 5 H 1.08996 * 112.85480 * 311.19703 * 4 2 1 6 6 C 1.53786 * 113.68796 * 82.46657 * 4 2 1 7 7 C 1.53784 * 87.08029 * 139.98984 * 6 4 2 8 8 C 1.53783 * 113.61075 * 179.97438 * 4 2 1 9 9 H 1.08992 * 113.61670 * 334.48214 * 8 4 2 10 10 N 1.46503 * 113.61382 * 105.39455 * 8 4 2 11 11 C 1.39781 * 119.99963 * 205.00320 * 10 8 4 12 12 C 1.38948 * 120.00760 * 359.71152 * 11 10 8 13 13 C 1.38010 * 119.99539 * 179.77388 * 12 11 10 14 14 C 1.38897 * 120.00244 * 0.50719 * 13 12 11 15 15 O 1.35802 * 119.99008 * 179.76323 * 14 13 12 16 16 C 1.34808 * 116.99792 * 174.43228 * 15 14 13 17 17 H 1.08001 * 120.00211 * 5.06982 * 16 15 14 18 18 C 1.38624 * 120.00059 * 185.05504 * 16 15 14 19 19 N 1.31584 * 119.99974 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00054 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47104 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47349 * 120.00309 * 20 18 16 23 23 H 1.48499 * 109.47221 * 240.00613 * 20 18 16 24 24 C 1.38891 * 120.01367 * 359.75183 * 14 13 12 25 25 C 1.38012 * 120.00963 * 359.97438 * 24 14 13 26 26 H 1.09000 * 109.46873 * 300.00062 * 1 2 3 27 27 H 1.09002 * 109.47088 * 60.00093 * 1 2 3 28 28 H 1.08999 * 109.46784 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46934 * 240.00487 * 2 1 3 30 30 H 1.08995 * 109.46869 * 299.99795 * 3 2 1 31 31 H 1.08999 * 109.46995 * 60.00524 * 3 2 1 32 32 H 1.09000 * 109.46533 * 179.97438 * 3 2 1 33 33 H 1.09000 * 113.61571 * 254.53885 * 6 4 2 34 34 H 1.09003 * 113.61522 * 25.44215 * 6 4 2 35 35 H 1.08996 * 113.61348 * 220.02152 * 7 6 4 36 36 H 1.09001 * 113.61261 * 89.11411 * 7 6 4 37 37 H 0.97004 * 120.00058 * 24.98793 * 10 8 4 38 38 H 1.08007 * 119.99797 * 0.02735 * 12 11 10 39 39 H 1.07999 * 119.99719 * 180.23336 * 13 12 11 40 40 H 0.96996 * 119.99720 * 179.97438 * 19 18 16 41 41 H 1.08004 * 119.99759 * 179.97438 * 24 14 13 42 42 H 1.07991 * 120.00655 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.5574 -0.3765 2.1637 6 6 2.0719 -2.2523 1.1090 7 6 3.4107 -2.2150 1.8648 8 6 3.5738 -0.7772 1.3451 9 1 4.0742 -0.7165 0.3787 10 7 4.1340 0.1447 2.3364 11 6 5.4477 0.6025 2.2011 12 6 6.2245 0.1788 1.1298 13 6 7.5200 0.6347 0.9939 14 6 8.0508 1.5088 1.9338 15 8 9.3273 1.9535 1.8024 16 6 9.7435 2.8872 2.6812 17 1 9.1001 3.1880 3.4948 18 6 10.9975 3.4610 2.5408 19 7 11.7814 3.0947 1.5495 20 14 11.5746 4.7543 3.7589 21 1 10.5149 4.9870 4.7729 22 1 12.8100 4.2822 4.4341 23 1 11.8576 6.0216 3.0384 24 6 7.2764 1.9284 3.0077 25 6 5.9789 1.4772 3.1410 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 3.1300 1.4426 0.0005 33 1 1.2757 -2.7575 1.6558 34 1 2.1619 -2.5946 0.0780 35 1 4.1538 -2.9083 1.4709 36 1 3.3027 -2.2786 2.9475 37 1 3.5931 0.4375 3.0865 38 1 5.8130 -0.5042 0.4012 39 1 8.1225 0.3082 0.1592 40 1 12.6588 3.4965 1.4510 41 1 7.6896 2.6078 3.7385 42 1 5.3767 1.8038 3.9758 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324349726.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:08 Heat of formation + Delta-G solvation = -10.187778 kcal Electronic energy + Delta-G solvation = -20826.312554 eV Core-core repulsion = 17771.397011 eV Total energy + Delta-G solvation = -3054.915544 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.01263 -40.27052 -38.28085 -35.37106 -34.40713 -33.70379 -31.78402 -29.00120 -27.98909 -27.19223 -26.24410 -25.17699 -23.56433 -22.35617 -21.27105 -20.55408 -19.59021 -18.85625 -17.64927 -17.11871 -16.26170 -16.12957 -15.78068 -15.38907 -15.17741 -15.06509 -14.59896 -14.45844 -14.07357 -13.80447 -13.70416 -13.56721 -13.37665 -13.09208 -12.98193 -12.83077 -12.80617 -12.46699 -12.22161 -12.09256 -12.04791 -11.77490 -11.47726 -11.10509 -11.07230 -11.04021 -10.76329 -10.06260 -9.76361 -8.38982 -7.87935 -6.02321 0.59929 0.95204 1.36637 1.45661 1.54873 2.22815 2.73666 2.91932 3.26032 3.60584 3.67584 3.77777 3.85713 4.07707 4.14951 4.17066 4.23915 4.35686 4.54467 4.58209 4.63344 4.73213 4.79279 4.85553 4.90010 4.96487 5.02702 5.08855 5.09308 5.13627 5.15983 5.27946 5.31344 5.34217 5.43989 5.49308 5.50463 5.57707 5.66943 5.80424 6.02868 6.12447 6.68945 7.06219 7.10379 7.94599 8.85937 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.035593 B = 0.003286 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.478960 B = 8517.851838 C = 8670.690617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.084 4.084 3 C -0.144 4.144 4 C -0.101 4.101 5 H 0.095 0.905 6 C -0.124 4.124 7 C -0.161 4.161 8 C 0.133 3.867 9 H 0.094 0.906 10 N -0.730 5.730 11 C 0.158 3.842 12 C -0.147 4.147 13 C -0.155 4.155 14 C 0.061 3.939 15 O -0.244 6.244 16 C -0.405 4.405 17 H 0.098 0.902 18 C -0.029 4.029 19 N -0.927 5.927 20 Si 1.017 2.983 21 H -0.252 1.252 22 H -0.270 1.270 23 H -0.270 1.270 24 C -0.193 4.193 25 C -0.148 4.148 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.040 0.960 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.062 0.938 36 H 0.081 0.919 37 H 0.402 0.598 38 H 0.140 0.860 39 H 0.111 0.889 40 H 0.269 0.731 41 H 0.117 0.883 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.707 -7.795 0.409 24.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.102 4.102 3 C -0.201 4.201 4 C -0.120 4.120 5 H 0.113 0.887 6 C -0.162 4.162 7 C -0.200 4.200 8 C 0.027 3.973 9 H 0.112 0.888 10 N -0.362 5.362 11 C 0.057 3.943 12 C -0.169 4.169 13 C -0.175 4.175 14 C 0.011 3.989 15 O -0.152 6.152 16 C -0.481 4.481 17 H 0.115 0.885 18 C -0.225 4.225 19 N -0.567 5.567 20 Si 0.837 3.163 21 H -0.175 1.175 22 H -0.195 1.195 23 H -0.195 1.195 24 C -0.212 4.212 25 C -0.170 4.170 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.099 0.901 34 H 0.106 0.894 35 H 0.081 0.919 36 H 0.099 0.901 37 H 0.237 0.763 38 H 0.157 0.843 39 H 0.129 0.871 40 H 0.078 0.922 41 H 0.135 0.865 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -23.382 -7.921 0.028 24.688 hybrid contribution 0.758 0.785 0.610 1.250 sum -22.625 -7.136 0.638 23.732 Atomic orbital electron populations 1.21775 0.94266 1.02103 1.01732 1.21081 0.96349 0.95451 0.97330 1.21771 1.00403 0.96592 1.01358 1.23031 0.94061 0.95975 0.98933 0.88662 1.22760 0.97165 0.95094 1.01175 1.23489 0.98255 0.97420 1.00836 1.22550 0.93760 0.88575 0.92439 0.88836 1.44346 1.09770 1.52308 1.29771 1.17536 0.86585 0.95589 0.94622 1.20436 0.92707 1.04161 0.99590 1.20229 0.96591 1.01315 0.99362 1.19714 0.85724 0.97322 0.96126 1.83933 1.23907 1.53561 1.53798 1.21789 1.01695 1.16950 1.07708 0.88498 1.26529 0.95203 1.00793 1.00003 1.70214 1.10071 1.44093 1.32369 0.84549 0.78673 0.76258 0.76839 1.17539 1.19488 1.19499 1.21043 0.95744 1.04945 0.99506 1.20490 0.94761 1.01080 1.00706 0.92768 0.92729 0.91910 0.91164 0.92844 0.93047 0.94113 0.90061 0.89375 0.91874 0.90081 0.76281 0.84262 0.87087 0.92172 0.86506 0.84454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.19 71.98 0.66 -1.00 16 2 C -0.08 -1.20 2.67 -10.79 -0.03 -1.23 16 3 C -0.14 -2.59 9.00 71.98 0.65 -1.94 16 4 C -0.10 -1.43 2.87 -10.27 -0.03 -1.45 16 5 H 0.10 1.29 8.12 -2.39 -0.02 1.27 16 6 C -0.12 -1.55 7.63 31.12 0.24 -1.31 16 7 C -0.16 -2.67 7.88 31.11 0.25 -2.43 16 8 C 0.13 2.51 2.63 45.51 0.12 2.63 16 9 H 0.09 1.96 6.10 -2.39 -0.01 1.95 16 10 N -0.73 -16.72 5.53 -316.37 -1.75 -18.47 16 11 C 0.16 5.05 6.66 38.21 0.25 5.30 16 12 C -0.15 -5.16 9.26 22.39 0.21 -4.96 16 13 C -0.16 -6.90 9.98 22.37 0.22 -6.67 16 14 C 0.06 3.14 6.65 22.58 0.15 3.29 16 15 O -0.24 -15.27 9.76 -23.10 -0.23 -15.49 16 16 C -0.40 -24.45 9.48 67.91 0.64 -23.81 16 17 H 0.10 5.39 5.20 -2.91 -0.02 5.38 16 18 C -0.03 -1.73 5.49 84.82 0.47 -1.26 16 19 N -0.93 -58.90 13.67 21.61 0.30 -58.61 16 20 Si 1.02 44.44 29.55 68.60 2.03 46.47 16 21 H -0.25 -10.16 7.11 99.48 0.71 -9.45 16 22 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 23 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 24 C -0.19 -8.69 9.16 22.37 0.20 -8.49 16 25 C -0.15 -5.25 9.89 22.39 0.22 -5.03 16 26 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.06 0.63 8.14 -2.39 -0.02 0.62 16 29 H 0.07 1.02 7.95 -2.39 -0.02 1.00 16 30 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.04 0.91 7.45 -2.39 -0.02 0.89 16 33 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.09 1.01 7.97 -2.39 -0.02 0.99 16 35 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.40 7.79 8.74 -92.71 -0.81 6.98 16 38 H 0.14 4.05 6.05 -2.91 -0.02 4.03 16 39 H 0.11 4.89 8.06 -2.91 -0.02 4.87 16 40 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 41 H 0.12 5.37 5.63 -2.91 -0.02 5.36 16 42 H 0.14 3.94 8.06 -2.91 -0.02 3.92 16 Total: -1.00 -71.49 341.04 4.77 -66.72 By element: Atomic # 1 Polarization: 27.55 SS G_CDS: 0.20 Total: 27.75 kcal Atomic # 6 Polarization: -52.59 SS G_CDS: 4.22 Total: -48.36 kcal Atomic # 7 Polarization: -75.62 SS G_CDS: -1.46 Total: -77.08 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: -0.23 Total: -15.49 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -71.49 4.77 -66.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324349726.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.528 kcal (2) G-P(sol) polarization free energy of solvation -71.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds