Wall clock time and date at job start Mon Mar 30 2020 03:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53010 * 109.46827 * 2 1 4 4 C 1.53000 * 109.47531 * 119.99701 * 2 1 3 5 5 H 1.08998 * 112.84930 * 290.33991 * 4 2 1 6 6 C 1.53779 * 113.61291 * 159.13611 * 4 2 1 7 7 C 1.53784 * 87.08119 * 220.02000 * 6 4 2 8 8 C 1.53788 * 113.61025 * 61.53386 * 4 2 1 9 9 H 1.08996 * 113.61182 * 254.53146 * 8 4 2 10 10 N 1.46499 * 113.61152 * 25.42968 * 8 4 2 11 11 C 1.39787 * 119.99948 * 204.99641 * 10 8 4 12 12 C 1.38953 * 120.00155 * 359.73542 * 11 10 8 13 13 C 1.38011 * 119.98912 * 179.71901 * 12 11 10 14 14 C 1.38903 * 120.00561 * 0.55299 * 13 12 11 15 15 O 1.35795 * 119.99375 * 179.70556 * 14 13 12 16 16 C 1.34809 * 117.00088 * 174.47767 * 15 14 13 17 17 H 1.08000 * 119.99958 * 5.05641 * 16 15 14 18 18 C 1.38629 * 120.00053 * 185.05243 * 16 15 14 19 19 N 1.31576 * 119.99566 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99794 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46989 * 60.00317 * 20 18 16 22 22 H 1.48504 * 109.46702 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47135 * 299.99856 * 20 18 16 24 24 C 1.38899 * 120.01123 * 359.71703 * 14 13 12 25 25 C 1.38005 * 120.00720 * 0.02562 * 24 14 13 26 26 H 1.08993 * 109.47501 * 299.99661 * 1 2 3 27 27 H 1.08999 * 109.47164 * 60.00013 * 1 2 3 28 28 H 1.08999 * 109.46665 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47246 * 240.00795 * 2 1 3 30 30 H 1.08999 * 109.46971 * 300.00422 * 3 2 1 31 31 H 1.09005 * 109.46856 * 60.00376 * 3 2 1 32 32 H 1.08996 * 109.47013 * 179.97438 * 3 2 1 33 33 H 1.08991 * 113.61883 * 334.57555 * 6 4 2 34 34 H 1.09006 * 113.61094 * 105.47570 * 6 4 2 35 35 H 1.09003 * 113.60952 * 139.97957 * 7 6 4 36 36 H 1.08993 * 113.61767 * 270.80248 * 7 6 4 37 37 H 0.97001 * 120.00231 * 25.01177 * 10 8 4 38 38 H 1.07993 * 120.00349 * 359.97438 * 12 11 10 39 39 H 1.07995 * 119.99875 * 180.24939 * 13 12 11 40 40 H 0.97008 * 119.99940 * 180.02562 * 19 18 16 41 41 H 1.07999 * 119.99548 * 179.97438 * 24 14 13 42 42 H 1.08003 * 120.00532 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.8521 -0.1632 2.1665 6 6 3.4868 -1.2266 1.1211 7 6 3.0257 -2.4948 1.8588 8 6 1.6122 -2.1963 1.3268 9 1 0.8223 -2.3841 2.0540 10 7 1.3382 -2.7973 0.0191 11 6 0.4745 -3.8919 -0.0798 12 6 -0.1199 -4.4135 1.0628 13 6 -0.9771 -5.4906 0.9641 14 6 -1.2368 -6.0604 -0.2757 15 8 -2.0756 -7.1239 -0.3718 16 6 -2.3749 -7.5573 -1.6128 17 1 -1.8896 -7.1157 -2.4706 18 6 -3.3055 -8.5698 -1.7878 19 7 -3.8969 -9.1075 -0.7426 20 14 -3.7206 -9.1697 -3.5074 21 1 -2.4933 -9.6941 -4.1585 22 1 -4.7367 -10.2495 -3.4230 23 1 -4.2625 -8.0423 -4.3076 24 6 -0.6384 -5.5427 -1.4173 25 6 0.2148 -4.4623 -1.3199 26 1 -0.3634 0.5137 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 1.8933 -0.5137 -0.8900 30 1 1.6765 1.9564 -0.8899 31 1 1.6766 1.9564 0.8901 32 1 3.1299 1.4427 0.0005 33 1 3.7964 -1.4082 0.0920 34 1 4.2081 -0.6328 1.6827 35 1 3.4581 -3.4129 1.4608 36 1 3.1082 -2.4235 2.9432 37 1 1.7562 -2.4357 -0.7780 38 1 0.0858 -3.9735 2.0273 39 1 -1.4423 -5.8935 1.8516 40 1 -4.5478 -9.8163 -0.8650 41 1 -0.8401 -5.9862 -2.3811 42 1 0.6804 -4.0600 -2.2075 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324349727.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:13 Heat of formation + Delta-G solvation = 12.790944 kcal Electronic energy + Delta-G solvation = -20989.399046 eV Core-core repulsion = 17935.479934 eV Total energy + Delta-G solvation = -3053.919112 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.12172 -38.70558 -36.55211 -34.31170 -32.90107 -31.87382 -30.16152 -27.59626 -26.91054 -25.48554 -25.35123 -24.41588 -21.98453 -20.96814 -20.68223 -18.90606 -17.74338 -17.07872 -16.60098 -15.60605 -15.04851 -14.53192 -14.42820 -14.29109 -13.87247 -13.51734 -13.40888 -13.32712 -12.96704 -12.60474 -12.40888 -12.35652 -12.22892 -12.08380 -11.55582 -11.53728 -11.34800 -11.13652 -10.97038 -10.88297 -10.74308 -10.53569 -10.36069 -10.15833 -9.98146 -9.20223 -9.10319 -8.40377 -8.14142 -6.36134 -6.30059 -3.87430 2.23467 2.59776 3.19996 3.21254 3.23683 3.79600 4.07891 4.39348 4.54148 4.62963 4.70078 4.90084 4.98490 5.13661 5.22144 5.27248 5.39663 5.44829 5.54887 5.60329 5.65151 5.68636 5.72022 5.77745 5.83366 5.87636 5.95096 6.06529 6.07632 6.09757 6.24557 6.30315 6.33675 6.37130 6.59847 6.89680 6.96000 7.17476 7.34687 7.48580 7.68072 8.03140 8.14203 8.28722 9.15636 9.90605 10.88495 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.033861 B = 0.003449 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.722670 B = 8115.468073 C = 8440.862279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.080 4.080 3 C -0.145 4.145 4 C -0.115 4.115 5 H 0.093 0.907 6 C -0.134 4.134 7 C -0.165 4.165 8 C 0.147 3.853 9 H 0.087 0.913 10 N -0.735 5.735 11 C 0.126 3.874 12 C -0.145 4.145 13 C -0.150 4.150 14 C 0.113 3.887 15 O -0.189 6.189 16 C -0.387 4.387 17 H 0.087 0.913 18 C 0.036 3.964 19 N -0.870 5.870 20 Si 0.937 3.063 21 H -0.272 1.272 22 H -0.279 1.279 23 H -0.272 1.272 24 C -0.190 4.190 25 C -0.142 4.142 26 H 0.049 0.951 27 H 0.048 0.952 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.076 0.924 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.390 0.610 38 H 0.112 0.888 39 H 0.116 0.884 40 H 0.267 0.733 41 H 0.126 0.874 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.038 17.207 2.310 21.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.099 4.099 3 C -0.203 4.203 4 C -0.134 4.134 5 H 0.111 0.889 6 C -0.171 4.171 7 C -0.205 4.205 8 C 0.039 3.961 9 H 0.104 0.896 10 N -0.369 5.369 11 C 0.029 3.971 12 C -0.167 4.167 13 C -0.170 4.170 14 C 0.061 3.939 15 O -0.094 6.094 16 C -0.464 4.464 17 H 0.105 0.895 18 C -0.167 4.167 19 N -0.506 5.506 20 Si 0.762 3.238 21 H -0.197 1.197 22 H -0.204 1.204 23 H -0.197 1.197 24 C -0.210 4.210 25 C -0.164 4.164 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.099 0.901 37 H 0.225 0.775 38 H 0.130 0.870 39 H 0.134 0.866 40 H 0.077 0.923 41 H 0.144 0.856 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 11.713 16.888 2.694 20.728 hybrid contribution 0.063 -0.115 -1.225 1.232 sum 11.776 16.773 1.470 20.547 Atomic orbital electron populations 1.21839 0.94810 1.03025 1.00949 1.20948 0.96140 0.95403 0.97396 1.21825 1.00707 0.96280 1.01471 1.23058 0.95988 0.95587 0.98793 0.88854 1.22911 0.96133 0.97416 1.00665 1.23520 0.98624 0.98330 0.99980 1.21600 0.95714 0.91895 0.86864 0.89556 1.43902 1.52321 1.34255 1.06443 1.17368 0.95385 0.90689 0.93672 1.20220 1.01254 0.98846 0.96364 1.20034 1.02786 0.98344 0.95870 1.19241 0.92418 0.89101 0.93154 1.83984 1.55953 1.38855 1.30583 1.21185 1.23756 1.19167 0.82283 0.89533 1.25207 0.95751 0.96414 0.99291 1.70040 1.26238 1.25032 1.29311 0.85845 0.78543 0.78607 0.80768 1.19689 1.20433 1.19688 1.20973 1.01582 0.99339 0.99126 1.20210 1.02482 0.98828 0.94918 0.93232 0.93290 0.91187 0.91537 0.92990 0.92907 0.92953 0.90506 0.91936 0.91060 0.90079 0.77499 0.87028 0.86605 0.92271 0.85594 0.87765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 8.97 37.16 0.33 -1.20 16 2 C -0.08 -0.72 2.15 -90.61 -0.19 -0.92 16 3 C -0.15 -1.14 9.17 37.16 0.34 -0.80 16 4 C -0.11 -1.03 3.07 -89.80 -0.28 -1.31 16 5 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 6 C -0.13 -1.16 7.50 -25.92 -0.19 -1.36 16 7 C -0.17 -1.66 7.89 -25.83 -0.20 -1.86 16 8 C 0.15 1.63 3.34 -67.02 -0.22 1.41 16 9 H 0.09 1.02 6.14 -51.93 -0.32 0.70 16 10 N -0.74 -9.51 4.01 -51.24 -0.21 -9.71 16 11 C 0.13 2.14 6.66 -83.70 -0.56 1.58 16 12 C -0.14 -2.61 9.26 -39.40 -0.36 -2.97 16 13 C -0.15 -3.23 9.98 -39.42 -0.39 -3.62 16 14 C 0.11 2.79 6.65 -39.09 -0.26 2.53 16 15 O -0.19 -5.52 9.76 -0.03 0.00 -5.52 16 16 C -0.39 -11.10 9.48 30.88 0.29 -10.80 16 17 H 0.09 2.29 5.20 -52.49 -0.27 2.02 16 18 C 0.04 1.02 5.49 -17.52 -0.10 0.93 16 19 N -0.87 -26.20 13.67 55.48 0.76 -25.44 16 20 Si 0.94 21.06 29.55 -169.99 -5.02 16.04 16 21 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 22 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 23 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 24 C -0.19 -4.19 9.16 -39.42 -0.36 -4.55 16 25 C -0.14 -2.62 9.89 -39.40 -0.39 -3.01 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.88 6.71 -51.93 -0.35 0.53 16 29 H 0.07 0.63 6.59 -51.93 -0.34 0.29 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 0.68 7.99 -51.93 -0.41 0.27 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.39 4.61 7.15 -40.82 -0.29 4.32 16 38 H 0.11 1.73 6.05 -52.49 -0.32 1.41 16 39 H 0.12 2.41 8.06 -52.49 -0.42 1.99 16 40 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 41 H 0.13 2.79 5.63 -52.49 -0.30 2.49 16 42 H 0.10 1.65 8.06 -52.48 -0.42 1.23 16 LS Contribution 336.13 15.07 5.07 5.07 Total: -1.00 -30.46 336.13 -8.34 -38.80 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -6.39 Total: 6.74 kcal Atomic # 6 Polarization: -23.42 SS G_CDS: -2.55 Total: -25.96 kcal Atomic # 7 Polarization: -35.71 SS G_CDS: 0.55 Total: -35.15 kcal Atomic # 8 Polarization: -5.52 SS G_CDS: 0.00 Total: -5.52 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.46 -8.34 -38.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324349727.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.588 kcal (2) G-P(sol) polarization free energy of solvation -30.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds