Wall clock time and date at job start Mon Mar 30 2020 03:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53010 * 109.46827 * 2 1 4 4 C 1.53000 * 109.47531 * 119.99701 * 2 1 3 5 5 H 1.08998 * 112.84930 * 290.33991 * 4 2 1 6 6 C 1.53779 * 113.61291 * 159.13611 * 4 2 1 7 7 C 1.53784 * 87.08119 * 220.02000 * 6 4 2 8 8 C 1.53788 * 113.61025 * 61.53386 * 4 2 1 9 9 H 1.08996 * 113.61182 * 254.53146 * 8 4 2 10 10 N 1.46499 * 113.61152 * 25.42968 * 8 4 2 11 11 C 1.39787 * 119.99948 * 204.99641 * 10 8 4 12 12 C 1.38953 * 120.00155 * 359.73542 * 11 10 8 13 13 C 1.38011 * 119.98912 * 179.71901 * 12 11 10 14 14 C 1.38903 * 120.00561 * 0.55299 * 13 12 11 15 15 O 1.35795 * 119.99375 * 179.70556 * 14 13 12 16 16 C 1.34809 * 117.00088 * 174.47767 * 15 14 13 17 17 H 1.08000 * 119.99958 * 5.05641 * 16 15 14 18 18 C 1.38629 * 120.00053 * 185.05243 * 16 15 14 19 19 N 1.31576 * 119.99566 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99794 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46989 * 60.00317 * 20 18 16 22 22 H 1.48504 * 109.46702 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47135 * 299.99856 * 20 18 16 24 24 C 1.38899 * 120.01123 * 359.71703 * 14 13 12 25 25 C 1.38005 * 120.00720 * 0.02562 * 24 14 13 26 26 H 1.08993 * 109.47501 * 299.99661 * 1 2 3 27 27 H 1.08999 * 109.47164 * 60.00013 * 1 2 3 28 28 H 1.08999 * 109.46665 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47246 * 240.00795 * 2 1 3 30 30 H 1.08999 * 109.46971 * 300.00422 * 3 2 1 31 31 H 1.09005 * 109.46856 * 60.00376 * 3 2 1 32 32 H 1.08996 * 109.47013 * 179.97438 * 3 2 1 33 33 H 1.08991 * 113.61883 * 334.57555 * 6 4 2 34 34 H 1.09006 * 113.61094 * 105.47570 * 6 4 2 35 35 H 1.09003 * 113.60952 * 139.97957 * 7 6 4 36 36 H 1.08993 * 113.61767 * 270.80248 * 7 6 4 37 37 H 0.97001 * 120.00231 * 25.01177 * 10 8 4 38 38 H 1.07993 * 120.00349 * 359.97438 * 12 11 10 39 39 H 1.07995 * 119.99875 * 180.24939 * 13 12 11 40 40 H 0.97008 * 119.99940 * 180.02562 * 19 18 16 41 41 H 1.07999 * 119.99548 * 179.97438 * 24 14 13 42 42 H 1.08003 * 120.00532 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.8521 -0.1632 2.1665 6 6 3.4868 -1.2266 1.1211 7 6 3.0257 -2.4948 1.8588 8 6 1.6122 -2.1963 1.3268 9 1 0.8223 -2.3841 2.0540 10 7 1.3382 -2.7973 0.0191 11 6 0.4745 -3.8919 -0.0798 12 6 -0.1199 -4.4135 1.0628 13 6 -0.9771 -5.4906 0.9641 14 6 -1.2368 -6.0604 -0.2757 15 8 -2.0756 -7.1239 -0.3718 16 6 -2.3749 -7.5573 -1.6128 17 1 -1.8896 -7.1157 -2.4706 18 6 -3.3055 -8.5698 -1.7878 19 7 -3.8969 -9.1075 -0.7426 20 14 -3.7206 -9.1697 -3.5074 21 1 -2.4933 -9.6941 -4.1585 22 1 -4.7367 -10.2495 -3.4230 23 1 -4.2625 -8.0423 -4.3076 24 6 -0.6384 -5.5427 -1.4173 25 6 0.2148 -4.4623 -1.3199 26 1 -0.3634 0.5137 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 1.8933 -0.5137 -0.8900 30 1 1.6765 1.9564 -0.8899 31 1 1.6766 1.9564 0.8901 32 1 3.1299 1.4427 0.0005 33 1 3.7964 -1.4082 0.0920 34 1 4.2081 -0.6328 1.6827 35 1 3.4581 -3.4129 1.4608 36 1 3.1082 -2.4235 2.9432 37 1 1.7562 -2.4357 -0.7780 38 1 0.0858 -3.9735 2.0273 39 1 -1.4423 -5.8935 1.8516 40 1 -4.5478 -9.8163 -0.8650 41 1 -0.8401 -5.9862 -2.3811 42 1 0.6804 -4.0600 -2.2075 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324349727.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:12 Heat of formation + Delta-G solvation = -4.030551 kcal Electronic energy + Delta-G solvation = -20990.128481 eV Core-core repulsion = 17935.479934 eV Total energy + Delta-G solvation = -3054.648546 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.15617 -40.30841 -38.21494 -35.18051 -34.43330 -33.66927 -31.78173 -28.90694 -27.92938 -27.14924 -26.24136 -25.56492 -23.52779 -22.53354 -21.45080 -20.14326 -19.37197 -18.72221 -18.04142 -16.73978 -16.22984 -16.13426 -15.82222 -15.41297 -15.19000 -15.06533 -14.73455 -14.48986 -14.19354 -14.05186 -13.69900 -13.47658 -13.42600 -13.02132 -12.93584 -12.83553 -12.72805 -12.45701 -12.30755 -12.11869 -11.95271 -11.73740 -11.41645 -11.09370 -11.07250 -10.82810 -10.75199 -10.07505 -9.75892 -8.38542 -7.88942 -6.02108 0.60470 0.95291 1.36655 1.48097 1.52891 2.23359 2.63816 2.92193 3.26358 3.60378 3.68256 3.81074 3.88030 4.08511 4.14977 4.18039 4.24593 4.42677 4.54222 4.58150 4.63477 4.73626 4.82217 4.86954 4.91581 4.96995 5.04109 5.10098 5.11208 5.13859 5.18867 5.29983 5.32969 5.36525 5.37224 5.52291 5.53285 5.57351 5.64998 5.80507 6.03011 6.12434 6.68627 7.05616 7.08570 7.94712 8.85906 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.033861 B = 0.003449 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.722670 B = 8115.468073 C = 8440.862279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.079 4.079 3 C -0.142 4.142 4 C -0.103 4.103 5 H 0.106 0.894 6 C -0.125 4.125 7 C -0.162 4.162 8 C 0.130 3.870 9 H 0.081 0.919 10 N -0.720 5.720 11 C 0.159 3.841 12 C -0.145 4.145 13 C -0.156 4.156 14 C 0.061 3.939 15 O -0.243 6.243 16 C -0.407 4.407 17 H 0.098 0.902 18 C -0.028 4.028 19 N -0.927 5.927 20 Si 1.016 2.984 21 H -0.258 1.258 22 H -0.273 1.273 23 H -0.259 1.259 24 C -0.193 4.193 25 C -0.147 4.147 26 H 0.053 0.947 27 H 0.049 0.951 28 H 0.045 0.955 29 H 0.064 0.936 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.056 0.944 36 H 0.095 0.905 37 H 0.401 0.599 38 H 0.142 0.858 39 H 0.111 0.889 40 H 0.270 0.730 41 H 0.118 0.882 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.350 20.059 1.648 24.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.097 4.097 3 C -0.199 4.199 4 C -0.122 4.122 5 H 0.124 0.876 6 C -0.163 4.163 7 C -0.201 4.201 8 C 0.023 3.977 9 H 0.099 0.901 10 N -0.353 5.353 11 C 0.059 3.941 12 C -0.167 4.167 13 C -0.175 4.175 14 C 0.012 3.988 15 O -0.151 6.151 16 C -0.484 4.484 17 H 0.115 0.885 18 C -0.224 4.224 19 N -0.567 5.567 20 Si 0.836 3.164 21 H -0.182 1.182 22 H -0.198 1.198 23 H -0.183 1.183 24 C -0.213 4.213 25 C -0.169 4.169 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.075 0.925 36 H 0.113 0.887 37 H 0.237 0.763 38 H 0.160 0.840 39 H 0.129 0.871 40 H 0.078 0.922 41 H 0.135 0.865 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 14.100 19.827 2.046 24.415 hybrid contribution -0.421 -0.673 -0.872 1.179 sum 13.679 19.153 1.174 23.566 Atomic orbital electron populations 1.21809 0.95872 1.01465 1.01295 1.20936 0.95085 0.96418 0.97282 1.21785 1.01194 0.95178 1.01785 1.23006 0.95915 0.93884 0.99385 0.87574 1.22880 0.96156 0.96533 1.00711 1.23501 0.97218 0.98406 1.00997 1.21879 0.96411 0.93797 0.85581 0.90074 1.43950 1.50638 1.32544 1.08129 1.17466 0.93644 0.90263 0.92756 1.20471 1.00256 0.97705 0.98255 1.20236 1.03319 0.99155 0.94822 1.19729 0.93908 0.89942 0.95251 1.83931 1.58602 1.41571 1.31032 1.21719 1.24182 1.19599 0.82875 0.88493 1.26526 0.95320 0.96331 1.04267 1.70201 1.27838 1.26455 1.32228 0.84684 0.78718 0.78288 0.74734 1.18237 1.19781 1.18295 1.21032 1.02024 1.00256 0.97960 1.20459 1.01818 0.97806 0.96823 0.92772 0.93214 0.93550 0.91752 0.92906 0.92474 0.92127 0.90494 0.90388 0.92548 0.88669 0.76280 0.84043 0.87079 0.92156 0.86462 0.84548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 8.97 71.98 0.65 -2.02 16 2 C -0.08 -1.15 2.15 -10.79 -0.02 -1.17 16 3 C -0.14 -1.71 9.17 71.99 0.66 -1.05 16 4 C -0.10 -1.45 3.07 -10.27 -0.03 -1.48 16 5 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 6 C -0.13 -1.66 7.50 31.12 0.23 -1.43 16 7 C -0.16 -2.68 7.89 31.18 0.25 -2.43 16 8 C 0.13 2.45 3.34 45.58 0.15 2.60 16 9 H 0.08 1.66 6.14 -2.39 -0.01 1.64 16 10 N -0.72 -16.39 4.01 -316.02 -1.27 -17.65 16 11 C 0.16 5.05 6.66 38.21 0.25 5.31 16 12 C -0.14 -5.04 9.26 22.39 0.21 -4.83 16 13 C -0.16 -6.87 9.98 22.38 0.22 -6.65 16 14 C 0.06 3.16 6.65 22.59 0.15 3.31 16 15 O -0.24 -15.20 9.76 -23.03 -0.22 -15.42 16 16 C -0.41 -24.55 9.48 67.91 0.64 -23.91 16 17 H 0.10 5.36 5.20 -2.91 -0.02 5.34 16 18 C -0.03 -1.67 5.49 84.82 0.47 -1.20 16 19 N -0.93 -58.86 13.67 21.61 0.30 -58.56 16 20 Si 1.02 44.29 29.55 68.60 2.03 46.32 16 21 H -0.26 -10.53 7.11 99.48 0.71 -9.83 16 22 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 23 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 24 C -0.19 -8.66 9.16 22.37 0.20 -8.45 16 25 C -0.15 -5.17 9.89 22.38 0.22 -4.95 16 26 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.05 1.05 6.71 -2.39 -0.02 1.04 16 29 H 0.06 0.98 6.59 -2.39 -0.02 0.96 16 30 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 32 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.08 1.05 7.99 -2.39 -0.02 1.03 16 34 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 35 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.40 7.99 7.15 -92.71 -0.66 7.33 16 38 H 0.14 4.05 6.05 -2.91 -0.02 4.03 16 39 H 0.11 4.87 8.06 -2.91 -0.02 4.85 16 40 H 0.27 15.71 8.31 -92.70 -0.77 14.94 16 41 H 0.12 5.35 5.63 -2.91 -0.02 5.34 16 42 H 0.14 3.90 8.06 -2.91 -0.02 3.88 16 Total: -1.00 -70.96 336.13 5.44 -65.53 By element: Atomic # 1 Polarization: 27.80 SS G_CDS: 0.35 Total: 28.16 kcal Atomic # 6 Polarization: -52.62 SS G_CDS: 4.25 Total: -48.36 kcal Atomic # 7 Polarization: -75.24 SS G_CDS: -0.97 Total: -76.21 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: -0.22 Total: -15.42 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -70.96 5.44 -65.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324349727.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.496 kcal (2) G-P(sol) polarization free energy of solvation -70.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds