Wall clock time and date at job start Mon Mar 30 2020 03:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47440 * 2 1 4 4 C 1.53009 * 109.46663 * 119.99812 * 2 1 3 5 5 H 1.08999 * 112.90918 * 311.25192 * 4 2 1 6 6 C 1.53782 * 113.61025 * 82.50197 * 4 2 1 7 7 C 1.53786 * 87.07606 * 139.98280 * 6 4 2 8 8 C 1.53775 * 113.61217 * 179.97438 * 4 2 1 9 9 H 1.09008 * 113.69086 * 105.46279 * 8 4 2 10 10 N 1.46497 * 113.61910 * 334.56780 * 8 4 2 11 11 C 1.39782 * 120.00115 * 157.99508 * 10 8 4 12 12 C 1.38952 * 120.00271 * 180.02562 * 11 10 8 13 13 C 1.38011 * 119.98964 * 179.97438 * 12 11 10 14 14 C 1.38900 * 120.00899 * 0.02562 * 13 12 11 15 15 O 1.35800 * 119.99629 * 179.97438 * 14 13 12 16 16 C 1.34815 * 116.99494 * 354.45744 * 15 14 13 17 17 H 1.07997 * 120.00534 * 5.05824 * 16 15 14 18 18 C 1.38625 * 119.99502 * 185.05776 * 16 15 14 19 19 N 1.31586 * 120.00053 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00057 * 180.02562 * 18 16 15 21 21 H 1.48508 * 109.47276 * 59.99516 * 20 18 16 22 22 H 1.48495 * 109.47305 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47046 * 299.99857 * 20 18 16 24 24 C 1.38896 * 120.01061 * 0.23431 * 14 13 12 25 25 C 1.38011 * 120.00588 * 359.49286 * 24 14 13 26 26 H 1.09004 * 109.46551 * 59.99899 * 1 2 3 27 27 H 1.08995 * 109.47574 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47177 * 300.00319 * 1 2 3 29 29 H 1.09000 * 109.47271 * 239.99176 * 2 1 3 30 30 H 1.09004 * 109.47168 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.47331 * 299.99624 * 3 2 1 32 32 H 1.09005 * 109.47119 * 59.99918 * 3 2 1 33 33 H 1.08997 * 113.61842 * 25.43393 * 6 4 2 34 34 H 1.09004 * 113.61453 * 254.52506 * 6 4 2 35 35 H 1.09008 * 113.61069 * 220.01493 * 7 6 4 36 36 H 1.08996 * 113.61534 * 89.11787 * 7 6 4 37 37 H 0.97005 * 119.99974 * 338.00388 * 10 8 4 38 38 H 1.07997 * 120.00743 * 359.97438 * 12 11 10 39 39 H 1.08001 * 119.99495 * 179.97438 * 13 12 11 40 40 H 0.96998 * 119.99550 * 180.02562 * 19 18 16 41 41 H 1.07996 * 119.99953 * 179.74224 * 24 14 13 42 42 H 1.07999 * 120.00441 * 180.23232 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2494 5 1 1.5572 -0.3779 2.1643 6 6 2.0718 -2.2521 1.1069 7 6 3.4105 -2.2158 1.8629 8 6 3.5737 -0.7774 1.3453 9 1 3.9917 -0.0928 2.0835 10 7 4.2465 -0.6938 0.0467 11 6 5.5781 -0.2747 -0.0249 12 6 6.2161 -0.1949 -1.2567 13 6 7.5307 0.2194 -1.3271 14 6 8.2161 0.5560 -0.1669 15 8 9.5097 0.9631 -0.2364 16 6 10.1042 0.9089 -1.4452 17 1 9.5305 0.6316 -2.3172 18 6 11.4519 1.2091 -1.5689 19 7 12.1507 1.5474 -0.5065 20 14 12.2755 1.1348 -3.2438 21 1 11.6092 2.0893 -4.1659 22 1 13.7088 1.4979 -3.1072 23 1 12.1630 -0.2415 -3.7901 24 6 7.5802 0.4711 1.0650 25 6 6.2639 0.0623 1.1356 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5140 -0.8899 30 1 3.1301 1.4424 0.0005 31 1 1.6769 1.9563 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 2.1620 -2.5929 0.0755 34 1 1.2756 -2.7582 1.6529 35 1 4.1538 -2.9087 1.4683 36 1 3.3024 -2.2810 2.9456 37 1 3.7678 -0.9291 -0.7636 38 1 5.6834 -0.4570 -2.1589 39 1 8.0268 0.2811 -2.2845 40 1 13.0936 1.7578 -0.5931 41 1 8.1145 0.7289 1.9674 42 1 5.7683 -0.0001 2.0931 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324349728.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:16 Heat of formation + Delta-G solvation = 13.022052 kcal Electronic energy + Delta-G solvation = -20982.946181 eV Core-core repulsion = 17929.037091 eV Total energy + Delta-G solvation = -3053.909090 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.14261 -38.70549 -36.54919 -34.31966 -32.90559 -31.87345 -30.15746 -27.61523 -26.89756 -25.49802 -25.34730 -24.41507 -21.97624 -20.96715 -20.69235 -18.90777 -17.74147 -17.07291 -16.60113 -15.61230 -15.07567 -14.52861 -14.43645 -14.29107 -13.89142 -13.46806 -13.39553 -13.36328 -12.96934 -12.60090 -12.39134 -12.37787 -12.21120 -12.10407 -11.55834 -11.54286 -11.34229 -11.14637 -10.97132 -10.88466 -10.75127 -10.53752 -10.36045 -10.16401 -9.98528 -9.20780 -9.09820 -8.40073 -8.13988 -6.36152 -6.29902 -3.87391 2.23584 2.59935 3.20091 3.21230 3.23761 3.79602 4.07952 4.38392 4.53786 4.62338 4.70146 4.90105 4.97607 5.13575 5.22147 5.25764 5.40091 5.44399 5.53964 5.60481 5.64769 5.68688 5.71772 5.77051 5.82776 5.87318 5.95295 6.05767 6.07916 6.09622 6.24554 6.29745 6.32865 6.36823 6.59992 6.89742 6.96048 7.17596 7.34745 7.48660 7.68173 8.03224 8.14316 8.28769 9.15731 9.90661 10.88596 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.035187 B = 0.003410 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.567483 B = 8208.782520 C = 8482.805241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.081 4.081 3 C -0.150 4.150 4 C -0.114 4.114 5 H 0.094 0.906 6 C -0.134 4.134 7 C -0.165 4.165 8 C 0.148 3.852 9 H 0.085 0.915 10 N -0.735 5.735 11 C 0.126 3.874 12 C -0.142 4.142 13 C -0.190 4.190 14 C 0.113 3.887 15 O -0.189 6.189 16 C -0.387 4.387 17 H 0.087 0.913 18 C 0.036 3.964 19 N -0.870 5.870 20 Si 0.937 3.063 21 H -0.272 1.272 22 H -0.279 1.279 23 H -0.272 1.272 24 C -0.150 4.150 25 C -0.145 4.145 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.048 0.952 32 H 0.049 0.951 33 H 0.077 0.923 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.390 0.610 38 H 0.104 0.896 39 H 0.126 0.874 40 H 0.267 0.733 41 H 0.116 0.884 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.595 -4.791 1.856 21.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.099 4.099 3 C -0.207 4.207 4 C -0.133 4.133 5 H 0.112 0.888 6 C -0.171 4.171 7 C -0.205 4.205 8 C 0.040 3.960 9 H 0.103 0.897 10 N -0.370 5.370 11 C 0.029 3.971 12 C -0.165 4.165 13 C -0.210 4.210 14 C 0.061 3.939 15 O -0.094 6.094 16 C -0.464 4.464 17 H 0.105 0.895 18 C -0.167 4.167 19 N -0.506 5.506 20 Si 0.762 3.238 21 H -0.197 1.197 22 H -0.204 1.204 23 H -0.197 1.197 24 C -0.170 4.170 25 C -0.167 4.167 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.225 0.775 38 H 0.122 0.878 39 H 0.144 0.856 40 H 0.077 0.923 41 H 0.134 0.866 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -20.189 -4.608 2.251 20.830 hybrid contribution 0.157 -0.229 -1.206 1.237 sum -20.031 -4.838 1.045 20.633 Atomic orbital electron populations 1.21822 0.95610 1.01352 1.01485 1.20956 0.95058 0.96557 0.97374 1.21861 1.02695 0.95205 1.00966 1.23042 0.96056 0.95447 0.98786 0.88801 1.22919 0.97732 0.95814 1.00641 1.23487 0.97678 0.99402 0.99922 1.21551 0.91580 0.95814 0.87082 0.89731 1.43919 1.09940 1.77061 1.06061 1.17367 0.84583 1.01490 0.93678 1.20213 0.95117 1.06137 0.94984 1.20975 0.94577 1.06584 0.98877 1.19240 0.86510 0.95154 0.93015 1.83988 1.19033 1.73368 1.32994 1.21185 0.92927 1.48280 0.83991 0.89532 1.25208 0.95355 0.96991 0.99118 1.70042 1.08380 1.43586 1.28625 0.85844 0.78368 0.78914 0.80629 1.19691 1.20436 1.19691 1.20034 0.94460 1.06760 0.95778 1.20216 0.94245 1.06010 0.96184 0.92988 0.92939 0.92884 0.91544 0.91090 0.93288 0.93215 0.90484 0.91941 0.91016 0.90077 0.77479 0.87765 0.85595 0.92273 0.86607 0.87043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.19 37.16 0.34 -0.78 16 2 C -0.08 -0.72 2.14 -90.62 -0.19 -0.91 16 3 C -0.15 -1.52 8.95 37.15 0.33 -1.19 16 4 C -0.11 -1.02 3.09 -89.81 -0.28 -1.30 16 5 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 6 C -0.13 -1.17 7.52 -25.92 -0.19 -1.36 16 7 C -0.17 -1.68 7.88 -25.94 -0.20 -1.88 16 8 C 0.15 1.63 3.24 -67.14 -0.22 1.42 16 9 H 0.08 1.00 6.27 -51.92 -0.33 0.68 16 10 N -0.74 -9.52 3.93 -51.35 -0.20 -9.72 16 11 C 0.13 2.14 6.66 -83.70 -0.56 1.58 16 12 C -0.14 -2.62 9.89 -39.40 -0.39 -3.01 16 13 C -0.19 -4.19 9.16 -39.42 -0.36 -4.55 16 14 C 0.11 2.79 6.65 -39.09 -0.26 2.53 16 15 O -0.19 -5.53 9.76 -0.06 0.00 -5.53 16 16 C -0.39 -11.10 9.48 30.88 0.29 -10.81 16 17 H 0.09 2.29 5.20 -52.49 -0.27 2.02 16 18 C 0.04 1.02 5.49 -17.51 -0.10 0.93 16 19 N -0.87 -26.21 13.67 55.48 0.76 -25.45 16 20 Si 0.94 21.07 29.55 -169.99 -5.02 16.05 16 21 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 22 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 23 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 24 C -0.15 -3.23 9.98 -39.42 -0.39 -3.62 16 25 C -0.14 -2.61 9.25 -39.40 -0.36 -2.97 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.62 6.58 -51.93 -0.34 0.27 16 30 H 0.07 0.87 6.57 -51.93 -0.34 0.53 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.69 7.96 -51.93 -0.41 0.28 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.84 8.14 -51.92 -0.42 0.42 16 36 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.39 4.62 7.09 -40.82 -0.29 4.33 16 38 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 39 H 0.13 2.79 5.63 -52.49 -0.30 2.49 16 40 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 41 H 0.12 2.41 8.06 -52.49 -0.42 1.99 16 42 H 0.11 1.73 6.10 -52.49 -0.32 1.41 16 LS Contribution 335.91 15.07 5.06 5.06 Total: -1.00 -30.48 335.91 -8.33 -38.81 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -6.39 Total: 6.72 kcal Atomic # 6 Polarization: -23.39 SS G_CDS: -2.54 Total: -25.94 kcal Atomic # 7 Polarization: -35.73 SS G_CDS: 0.56 Total: -35.17 kcal Atomic # 8 Polarization: -5.53 SS G_CDS: 0.00 Total: -5.53 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.48 -8.33 -38.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324349728.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.833 kcal (2) G-P(sol) polarization free energy of solvation -30.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds