Wall clock time and date at job start Mon Mar 30 2020 03:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47440 * 2 1 4 4 C 1.53009 * 109.46663 * 119.99812 * 2 1 3 5 5 H 1.08999 * 112.90918 * 311.25192 * 4 2 1 6 6 C 1.53782 * 113.61025 * 82.50197 * 4 2 1 7 7 C 1.53786 * 87.07606 * 139.98280 * 6 4 2 8 8 C 1.53775 * 113.61217 * 179.97438 * 4 2 1 9 9 H 1.09008 * 113.69086 * 105.46279 * 8 4 2 10 10 N 1.46497 * 113.61910 * 334.56780 * 8 4 2 11 11 C 1.39782 * 120.00115 * 157.99508 * 10 8 4 12 12 C 1.38952 * 120.00271 * 180.02562 * 11 10 8 13 13 C 1.38011 * 119.98964 * 179.97438 * 12 11 10 14 14 C 1.38900 * 120.00899 * 0.02562 * 13 12 11 15 15 O 1.35800 * 119.99629 * 179.97438 * 14 13 12 16 16 C 1.34815 * 116.99494 * 354.45744 * 15 14 13 17 17 H 1.07997 * 120.00534 * 5.05824 * 16 15 14 18 18 C 1.38625 * 119.99502 * 185.05776 * 16 15 14 19 19 N 1.31586 * 120.00053 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00057 * 180.02562 * 18 16 15 21 21 H 1.48508 * 109.47276 * 59.99516 * 20 18 16 22 22 H 1.48495 * 109.47305 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47046 * 299.99857 * 20 18 16 24 24 C 1.38896 * 120.01061 * 0.23431 * 14 13 12 25 25 C 1.38011 * 120.00588 * 359.49286 * 24 14 13 26 26 H 1.09004 * 109.46551 * 59.99899 * 1 2 3 27 27 H 1.08995 * 109.47574 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47177 * 300.00319 * 1 2 3 29 29 H 1.09000 * 109.47271 * 239.99176 * 2 1 3 30 30 H 1.09004 * 109.47168 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.47331 * 299.99624 * 3 2 1 32 32 H 1.09005 * 109.47119 * 59.99918 * 3 2 1 33 33 H 1.08997 * 113.61842 * 25.43393 * 6 4 2 34 34 H 1.09004 * 113.61453 * 254.52506 * 6 4 2 35 35 H 1.09008 * 113.61069 * 220.01493 * 7 6 4 36 36 H 1.08996 * 113.61534 * 89.11787 * 7 6 4 37 37 H 0.97005 * 119.99974 * 338.00388 * 10 8 4 38 38 H 1.07997 * 120.00743 * 359.97438 * 12 11 10 39 39 H 1.08001 * 119.99495 * 179.97438 * 13 12 11 40 40 H 0.96998 * 119.99550 * 180.02562 * 19 18 16 41 41 H 1.07996 * 119.99953 * 179.74224 * 24 14 13 42 42 H 1.07999 * 120.00441 * 180.23232 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2494 5 1 1.5572 -0.3779 2.1643 6 6 2.0718 -2.2521 1.1069 7 6 3.4105 -2.2158 1.8629 8 6 3.5737 -0.7774 1.3453 9 1 3.9917 -0.0928 2.0835 10 7 4.2465 -0.6938 0.0467 11 6 5.5781 -0.2747 -0.0249 12 6 6.2161 -0.1949 -1.2567 13 6 7.5307 0.2194 -1.3271 14 6 8.2161 0.5560 -0.1669 15 8 9.5097 0.9631 -0.2364 16 6 10.1042 0.9089 -1.4452 17 1 9.5305 0.6316 -2.3172 18 6 11.4519 1.2091 -1.5689 19 7 12.1507 1.5474 -0.5065 20 14 12.2755 1.1348 -3.2438 21 1 11.6092 2.0893 -4.1659 22 1 13.7088 1.4979 -3.1072 23 1 12.1630 -0.2415 -3.7901 24 6 7.5802 0.4711 1.0650 25 6 6.2639 0.0623 1.1356 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5140 -0.8899 30 1 3.1301 1.4424 0.0005 31 1 1.6769 1.9563 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 2.1620 -2.5929 0.0755 34 1 1.2756 -2.7582 1.6529 35 1 4.1538 -2.9087 1.4683 36 1 3.3024 -2.2810 2.9456 37 1 3.7678 -0.9291 -0.7636 38 1 5.6834 -0.4570 -2.1589 39 1 8.0268 0.2811 -2.2845 40 1 13.0936 1.7578 -0.5931 41 1 8.1145 0.7289 1.9674 42 1 5.7683 -0.0001 2.0931 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324349728.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:16 Heat of formation + Delta-G solvation = -3.796517 kcal Electronic energy + Delta-G solvation = -20983.675489 eV Core-core repulsion = 17929.037091 eV Total energy + Delta-G solvation = -3054.638398 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.17188 -40.31461 -38.21352 -35.17728 -34.43779 -33.67392 -31.77904 -28.91952 -27.91396 -27.14694 -26.25299 -25.56265 -23.52464 -22.53346 -21.45194 -20.14388 -19.37448 -18.71935 -18.03901 -16.74018 -16.23032 -16.14908 -15.83408 -15.41680 -15.19568 -15.05631 -14.73523 -14.50360 -14.16970 -14.04651 -13.69937 -13.47571 -13.42022 -13.01829 -12.93734 -12.83499 -12.73196 -12.44743 -12.31292 -12.12509 -11.95504 -11.73442 -11.42021 -11.09639 -11.07887 -10.83043 -10.75299 -10.07414 -9.75858 -8.38557 -7.89024 -6.02166 0.60466 0.95293 1.36676 1.48066 1.52923 2.23364 2.63746 2.92236 3.26135 3.59498 3.68769 3.80418 3.87948 4.08438 4.14947 4.18327 4.24348 4.42493 4.54016 4.58193 4.63451 4.73357 4.82049 4.87147 4.91537 4.97142 5.04269 5.10134 5.11244 5.13890 5.19016 5.29796 5.32683 5.36362 5.37275 5.52611 5.53168 5.57348 5.64753 5.80482 6.02992 6.12453 6.68500 7.05556 7.08503 7.94669 8.85915 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.035187 B = 0.003410 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.567483 B = 8208.782520 C = 8482.805241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.079 4.079 3 C -0.148 4.148 4 C -0.101 4.101 5 H 0.107 0.893 6 C -0.125 4.125 7 C -0.163 4.163 8 C 0.131 3.869 9 H 0.080 0.920 10 N -0.720 5.720 11 C 0.159 3.841 12 C -0.147 4.147 13 C -0.193 4.193 14 C 0.061 3.939 15 O -0.243 6.243 16 C -0.407 4.407 17 H 0.098 0.902 18 C -0.028 4.028 19 N -0.928 5.928 20 Si 1.016 2.984 21 H -0.258 1.258 22 H -0.273 1.273 23 H -0.259 1.259 24 C -0.156 4.156 25 C -0.144 4.144 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.047 0.953 31 H 0.049 0.951 32 H 0.053 0.947 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.055 0.945 36 H 0.095 0.905 37 H 0.401 0.599 38 H 0.137 0.863 39 H 0.118 0.882 40 H 0.270 0.730 41 H 0.111 0.889 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.024 -6.035 1.130 24.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.098 4.098 3 C -0.205 4.205 4 C -0.120 4.120 5 H 0.125 0.875 6 C -0.163 4.163 7 C -0.202 4.202 8 C 0.024 3.976 9 H 0.098 0.902 10 N -0.353 5.353 11 C 0.058 3.942 12 C -0.169 4.169 13 C -0.213 4.213 14 C 0.012 3.988 15 O -0.151 6.151 16 C -0.484 4.484 17 H 0.115 0.885 18 C -0.225 4.225 19 N -0.567 5.567 20 Si 0.836 3.164 21 H -0.182 1.182 22 H -0.198 1.198 23 H -0.183 1.183 24 C -0.175 4.175 25 C -0.167 4.167 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.073 0.927 36 H 0.113 0.887 37 H 0.237 0.763 38 H 0.155 0.845 39 H 0.135 0.865 40 H 0.078 0.922 41 H 0.129 0.871 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -23.727 -5.884 1.534 24.494 hybrid contribution 0.824 0.072 -0.843 1.181 sum -22.903 -5.812 0.691 23.639 Atomic orbital electron populations 1.21783 0.94365 1.01975 1.01815 1.20944 0.96072 0.95536 0.97227 1.21829 1.01073 0.96311 1.01322 1.22991 0.93820 0.95785 0.99440 0.87475 1.22888 0.97240 0.95550 1.00608 1.23473 0.98119 0.97672 1.00974 1.21829 0.93189 0.96752 0.85821 0.90201 1.43967 1.08235 1.75339 1.07764 1.17466 0.85914 0.97997 0.92773 1.20462 0.93881 1.05636 0.96928 1.21034 0.95983 1.06560 0.97687 1.19728 0.85809 0.98182 0.95110 1.83935 1.21417 1.76271 1.33515 1.21720 0.93740 1.48325 0.84584 0.88489 1.26528 0.95722 0.96370 1.03835 1.70203 1.08813 1.46156 1.31565 0.84682 0.77099 0.79673 0.74958 1.18241 1.19780 1.18296 1.20236 0.95831 1.06710 0.94759 1.20463 0.92919 1.05203 0.98068 0.92871 0.92158 0.92452 0.91723 0.93383 0.93149 0.92799 0.90532 0.90392 0.92660 0.88659 0.76265 0.84546 0.86457 0.92157 0.87083 0.84074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.19 71.98 0.66 -1.02 16 2 C -0.08 -1.13 2.14 -10.79 -0.02 -1.16 16 3 C -0.15 -2.61 8.95 71.98 0.64 -1.97 16 4 C -0.10 -1.42 3.09 -10.27 -0.03 -1.45 16 5 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 6 C -0.13 -1.68 7.52 31.12 0.23 -1.45 16 7 C -0.16 -2.75 7.88 31.11 0.25 -2.51 16 8 C 0.13 2.47 3.24 45.50 0.15 2.61 16 9 H 0.08 1.63 6.27 -2.38 -0.01 1.62 16 10 N -0.72 -16.41 3.93 -316.38 -1.24 -17.66 16 11 C 0.16 5.05 6.66 38.21 0.25 5.31 16 12 C -0.15 -5.18 9.89 22.39 0.22 -4.95 16 13 C -0.19 -8.66 9.16 22.37 0.20 -8.45 16 14 C 0.06 3.16 6.65 22.59 0.15 3.31 16 15 O -0.24 -15.20 9.76 -23.14 -0.23 -15.43 16 16 C -0.41 -24.55 9.48 67.91 0.64 -23.91 16 17 H 0.10 5.36 5.20 -2.91 -0.02 5.35 16 18 C -0.03 -1.67 5.49 84.82 0.47 -1.21 16 19 N -0.93 -58.88 13.67 21.61 0.30 -58.58 16 20 Si 1.02 44.30 29.55 68.60 2.03 46.33 16 21 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 22 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 23 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 24 C -0.16 -6.88 9.98 22.37 0.22 -6.65 16 25 C -0.14 -5.04 9.25 22.39 0.21 -4.83 16 26 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.06 0.96 6.58 -2.39 -0.02 0.95 16 30 H 0.05 1.06 6.57 -2.38 -0.02 1.05 16 31 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 33 H 0.08 1.07 7.96 -2.39 -0.02 1.05 16 34 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 35 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 36 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.40 8.01 7.09 -92.70 -0.66 7.35 16 38 H 0.14 3.91 8.06 -2.91 -0.02 3.88 16 39 H 0.12 5.36 5.63 -2.91 -0.02 5.34 16 40 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 41 H 0.11 4.87 8.06 -2.91 -0.02 4.85 16 42 H 0.14 4.05 6.10 -2.91 -0.02 4.04 16 Total: -1.00 -70.98 335.91 5.46 -65.52 By element: Atomic # 1 Polarization: 27.78 SS G_CDS: 0.36 Total: 28.13 kcal Atomic # 6 Polarization: -52.57 SS G_CDS: 4.25 Total: -48.32 kcal Atomic # 7 Polarization: -75.29 SS G_CDS: -0.95 Total: -76.24 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: -0.23 Total: -15.43 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -70.98 5.46 -65.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324349728.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.726 kcal (2) G-P(sol) polarization free energy of solvation -70.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds