Wall clock time and date at job start Mon Mar 30 2020 03:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47161 * 2 1 4 4 C 1.52999 * 109.47084 * 119.99312 * 2 1 3 5 5 H 1.09003 * 112.91129 * 288.75041 * 4 2 1 6 6 C 1.53785 * 113.61447 * 157.49484 * 4 2 1 7 7 C 1.53784 * 87.08088 * 220.02335 * 6 4 2 8 8 C 1.53779 * 87.08254 * 25.43137 * 7 6 4 9 9 H 1.09005 * 113.61176 * 89.20122 * 8 7 6 10 10 N 1.46491 * 113.61601 * 220.01878 * 8 7 6 11 11 C 1.39782 * 120.00074 * 255.49914 * 10 8 7 12 12 C 1.38954 * 120.00738 * 180.02562 * 11 10 8 13 13 C 1.38015 * 119.99012 * 180.02562 * 12 11 10 14 14 C 1.38897 * 120.01139 * 359.97438 * 13 12 11 15 15 O 1.35792 * 119.99347 * 180.02562 * 14 13 12 16 16 C 1.34809 * 117.00438 * 5.53628 * 15 14 13 17 17 H 1.08005 * 119.99735 * 354.94500 * 16 15 14 18 18 C 1.38617 * 120.00131 * 174.94450 * 16 15 14 19 19 N 1.31583 * 119.99878 * 179.97438 * 18 16 15 20 20 Si 1.86794 * 120.00108 * 0.02562 * 18 16 15 21 21 H 1.48506 * 109.47305 * 269.99824 * 20 18 16 22 22 H 1.48505 * 109.47284 * 150.00133 * 20 18 16 23 23 H 1.48504 * 109.47279 * 29.99968 * 20 18 16 24 24 C 1.38896 * 120.00949 * 0.27528 * 14 13 12 25 25 C 1.38021 * 120.00476 * 359.49050 * 24 14 13 26 26 H 1.08997 * 109.47255 * 180.02562 * 1 2 3 27 27 H 1.09009 * 109.46907 * 300.00512 * 1 2 3 28 28 H 1.08999 * 109.46978 * 60.00181 * 1 2 3 29 29 H 1.08997 * 109.47131 * 239.99790 * 2 1 3 30 30 H 1.09004 * 109.47401 * 180.02562 * 3 2 1 31 31 H 1.09009 * 109.46984 * 299.99257 * 3 2 1 32 32 H 1.08997 * 109.47995 * 59.99709 * 3 2 1 33 33 H 1.08999 * 113.60959 * 105.47385 * 6 4 2 34 34 H 1.09001 * 113.61169 * 334.57216 * 6 4 2 35 35 H 1.08996 * 113.61070 * 270.88162 * 7 6 4 36 36 H 1.09002 * 113.61225 * 139.98223 * 7 6 4 37 37 H 0.96998 * 120.00468 * 75.49539 * 10 8 7 38 38 H 1.08000 * 120.00158 * 0.03951 * 12 11 10 39 39 H 1.08005 * 119.99218 * 180.02562 * 13 12 11 40 40 H 0.96998 * 120.00178 * 179.97438 * 19 18 16 41 41 H 1.07996 * 119.99981 * 179.74416 * 24 14 13 42 42 H 1.08006 * 119.99701 * 180.23253 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 1.8771 -0.1514 2.1643 6 6 3.4726 -1.2616 1.1069 7 6 2.9921 -2.5116 1.8629 8 6 1.5810 -2.1857 1.3457 9 1 1.3546 -2.6382 0.3802 10 7 0.5266 -2.4062 2.3385 11 6 -0.3036 -3.5263 2.2393 12 6 -1.3041 -3.7353 3.1806 13 6 -2.1233 -4.8417 3.0826 14 6 -1.9481 -5.7460 2.0430 15 8 -2.7546 -6.8342 1.9467 16 6 -3.7762 -6.9184 2.8222 17 1 -3.8756 -6.1843 3.6082 18 6 -4.6991 -7.9470 2.7137 19 7 -5.6960 -8.0293 3.5686 20 14 -4.5268 -9.2169 1.3547 21 1 -5.2679 -8.7587 0.1521 22 1 -5.0846 -10.5138 1.8154 23 1 -3.0910 -9.3878 1.0160 24 6 -0.9447 -5.5401 1.1049 25 6 -0.1283 -4.4313 1.1996 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5140 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6767 1.9565 0.8899 33 1 4.2151 -0.6797 1.6529 34 1 3.7638 -1.4602 0.0755 35 1 3.0896 -2.4314 2.9455 36 1 3.3974 -3.4433 1.4682 37 1 0.4045 -1.7749 3.0647 38 1 -1.4408 -3.0319 3.9886 39 1 -2.9013 -5.0040 3.8140 40 1 -6.3420 -8.7489 3.4924 41 1 -0.8059 -6.2455 0.2990 42 1 0.6495 -4.2693 0.4679 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324349729.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:20 Heat of formation + Delta-G solvation = 8.709363 kcal Electronic energy + Delta-G solvation = -20845.999427 eV Core-core repulsion = 17791.903324 eV Total energy + Delta-G solvation = -3054.096102 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.00451 -38.87311 -36.79633 -34.48631 -32.99624 -32.09228 -30.24287 -27.81490 -27.17786 -25.53472 -25.26283 -23.93487 -22.17530 -20.94216 -20.29215 -19.70058 -17.70585 -17.31745 -16.40171 -15.98501 -15.32790 -14.60480 -14.39537 -13.90611 -13.84528 -13.71754 -13.55678 -13.07016 -12.95914 -12.63954 -12.49220 -12.31368 -12.22754 -12.14607 -12.03067 -11.71212 -11.53162 -11.23613 -11.06855 -10.82368 -10.80956 -10.53885 -10.31902 -10.19872 -10.06456 -9.26345 -9.13832 -8.50716 -8.22366 -6.45725 -6.28767 -3.93034 2.14508 2.49791 3.29412 3.32867 3.48345 3.83466 4.33293 4.34264 4.45645 4.54840 4.63445 4.83444 4.92735 5.00023 5.06767 5.19917 5.22903 5.39120 5.46213 5.50192 5.59079 5.61736 5.64565 5.71388 5.72605 5.77450 5.86122 5.96952 5.98477 6.13369 6.16319 6.19020 6.23434 6.34664 6.48003 6.81222 6.87461 7.03916 7.37682 7.52225 7.82982 7.96768 8.13382 8.25508 9.08010 9.74590 10.79944 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.034856 B = 0.003365 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.119491 B = 8318.575620 C = 8392.499467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 C -0.145 4.145 4 C -0.111 4.111 5 H 0.089 0.911 6 C -0.136 4.136 7 C -0.161 4.161 8 C 0.147 3.853 9 H 0.100 0.900 10 N -0.744 5.744 11 C 0.135 3.865 12 C -0.145 4.145 13 C -0.175 4.175 14 C 0.116 3.884 15 O -0.229 6.229 16 C -0.383 4.383 17 H 0.103 0.897 18 C 0.059 3.941 19 N -0.889 5.889 20 Si 0.905 3.095 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.260 1.260 24 C -0.149 4.149 25 C -0.150 4.150 26 H 0.062 0.938 27 H 0.052 0.948 28 H 0.049 0.951 29 H 0.069 0.931 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.067 0.933 37 H 0.391 0.609 38 H 0.107 0.893 39 H 0.133 0.867 40 H 0.277 0.723 41 H 0.115 0.885 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.362 15.675 -5.723 23.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.104 4.104 3 C -0.202 4.202 4 C -0.130 4.130 5 H 0.107 0.893 6 C -0.174 4.174 7 C -0.201 4.201 8 C 0.040 3.960 9 H 0.117 0.883 10 N -0.377 5.377 11 C 0.036 3.964 12 C -0.167 4.167 13 C -0.195 4.195 14 C 0.065 3.935 15 O -0.135 6.135 16 C -0.459 4.459 17 H 0.120 0.880 18 C -0.142 4.142 19 N -0.528 5.528 20 Si 0.731 3.269 21 H -0.201 1.201 22 H -0.210 1.210 23 H -0.185 1.185 24 C -0.169 4.169 25 C -0.173 4.173 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.087 0.913 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.085 0.915 37 H 0.225 0.775 38 H 0.126 0.874 39 H 0.150 0.850 40 H 0.087 0.913 41 H 0.133 0.867 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 16.252 15.307 -5.958 23.107 hybrid contribution -0.174 -0.257 -0.033 0.312 sum 16.077 15.051 -5.991 22.823 Atomic orbital electron populations 1.21798 0.94777 1.02518 1.01227 1.21090 0.96089 0.95890 0.97336 1.21811 1.00769 0.96095 1.01541 1.23079 0.95704 0.95640 0.98594 0.89261 1.22797 0.96106 0.97688 1.00794 1.23521 0.97947 0.97944 1.00651 1.22266 0.85954 0.94664 0.93104 0.88256 1.44266 1.36087 1.26179 1.31168 1.17472 0.93194 0.89367 0.96343 1.20291 0.97439 0.99362 0.99653 1.21105 1.02213 0.95724 1.00474 1.18955 0.92297 0.87923 0.94324 1.83570 1.38213 1.37015 1.54724 1.20703 1.01940 1.14250 1.09053 0.87981 1.24420 0.94183 0.97749 0.97891 1.69664 1.13659 1.33306 1.36211 0.86187 0.79534 0.79822 0.81345 1.20086 1.21036 1.18458 1.20012 0.97589 0.99231 1.00053 1.20173 1.02158 0.95730 0.99191 0.91936 0.92921 0.93174 0.91290 0.92853 0.92933 0.92874 0.91468 0.90127 0.90083 0.91469 0.77536 0.87447 0.84973 0.91337 0.86650 0.87045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 8.99 37.16 0.33 -1.06 16 2 C -0.09 -0.71 2.67 -90.62 -0.24 -0.95 16 3 C -0.14 -1.05 9.19 37.16 0.34 -0.71 16 4 C -0.11 -0.94 2.87 -89.80 -0.26 -1.20 16 5 H 0.09 0.76 8.11 -51.93 -0.42 0.34 16 6 C -0.14 -1.07 7.63 -25.91 -0.20 -1.26 16 7 C -0.16 -1.55 7.88 -25.92 -0.20 -1.75 16 8 C 0.15 1.55 2.56 -67.12 -0.17 1.38 16 9 H 0.10 1.12 6.22 -51.93 -0.32 0.80 16 10 N -0.74 -9.36 5.55 -51.33 -0.28 -9.65 16 11 C 0.13 2.21 6.66 -83.71 -0.56 1.66 16 12 C -0.15 -2.64 9.89 -39.40 -0.39 -3.03 16 13 C -0.18 -3.84 9.16 -39.42 -0.36 -4.20 16 14 C 0.12 2.73 6.65 -39.09 -0.26 2.47 16 15 O -0.23 -6.19 8.58 -0.02 0.00 -6.19 16 16 C -0.38 -11.08 9.94 30.87 0.31 -10.77 16 17 H 0.10 3.00 5.43 -52.48 -0.28 2.72 16 18 C 0.06 1.70 5.49 -17.52 -0.10 1.61 16 19 N -0.89 -26.36 13.96 55.48 0.77 -25.59 16 20 Si 0.91 22.29 28.61 -169.99 -4.86 17.43 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.26 -6.43 7.11 56.52 0.40 -6.03 16 24 C -0.15 -3.00 9.98 -39.42 -0.39 -3.39 16 25 C -0.15 -2.58 9.25 -39.40 -0.36 -2.95 16 26 H 0.06 0.71 7.45 -51.93 -0.39 0.33 16 27 H 0.05 0.51 8.14 -51.92 -0.42 0.09 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.57 7.94 -51.93 -0.41 0.16 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.05 0.36 8.14 -51.92 -0.42 -0.06 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.59 7.96 -51.93 -0.41 0.18 16 35 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.39 4.42 8.71 -40.82 -0.36 4.06 16 38 H 0.11 1.70 8.06 -52.49 -0.42 1.27 16 39 H 0.13 3.05 5.63 -52.48 -0.30 2.75 16 40 H 0.28 7.60 8.31 -40.82 -0.34 7.26 16 41 H 0.12 2.17 8.06 -52.49 -0.42 1.75 16 42 H 0.11 1.63 6.10 -52.48 -0.32 1.31 16 LS Contribution 339.97 15.07 5.12 5.12 Total: -1.00 -29.77 339.97 -8.34 -38.11 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -6.58 Total: 4.93 kcal Atomic # 6 Polarization: -21.65 SS G_CDS: -2.51 Total: -24.17 kcal Atomic # 7 Polarization: -35.72 SS G_CDS: 0.49 Total: -35.23 kcal Atomic # 8 Polarization: -6.19 SS G_CDS: 0.00 Total: -6.19 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.86 Total: 17.43 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.77 -8.34 -38.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324349729.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.818 kcal (2) G-P(sol) polarization free energy of solvation -29.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds