Wall clock time and date at job start Mon Mar 30 2020 03:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47161 * 2 1 4 4 C 1.52999 * 109.47084 * 119.99312 * 2 1 3 5 5 H 1.09003 * 112.91129 * 288.75041 * 4 2 1 6 6 C 1.53785 * 113.61447 * 157.49484 * 4 2 1 7 7 C 1.53784 * 87.08088 * 220.02335 * 6 4 2 8 8 C 1.53779 * 87.08254 * 25.43137 * 7 6 4 9 9 H 1.09005 * 113.61176 * 89.20122 * 8 7 6 10 10 N 1.46491 * 113.61601 * 220.01878 * 8 7 6 11 11 C 1.39782 * 120.00074 * 255.49914 * 10 8 7 12 12 C 1.38954 * 120.00738 * 180.02562 * 11 10 8 13 13 C 1.38015 * 119.99012 * 180.02562 * 12 11 10 14 14 C 1.38897 * 120.01139 * 359.97438 * 13 12 11 15 15 O 1.35792 * 119.99347 * 180.02562 * 14 13 12 16 16 C 1.34809 * 117.00438 * 5.53628 * 15 14 13 17 17 H 1.08005 * 119.99735 * 354.94500 * 16 15 14 18 18 C 1.38617 * 120.00131 * 174.94450 * 16 15 14 19 19 N 1.31583 * 119.99878 * 179.97438 * 18 16 15 20 20 Si 1.86794 * 120.00108 * 0.02562 * 18 16 15 21 21 H 1.48506 * 109.47305 * 269.99824 * 20 18 16 22 22 H 1.48505 * 109.47284 * 150.00133 * 20 18 16 23 23 H 1.48504 * 109.47279 * 29.99968 * 20 18 16 24 24 C 1.38896 * 120.00949 * 0.27528 * 14 13 12 25 25 C 1.38021 * 120.00476 * 359.49050 * 24 14 13 26 26 H 1.08997 * 109.47255 * 180.02562 * 1 2 3 27 27 H 1.09009 * 109.46907 * 300.00512 * 1 2 3 28 28 H 1.08999 * 109.46978 * 60.00181 * 1 2 3 29 29 H 1.08997 * 109.47131 * 239.99790 * 2 1 3 30 30 H 1.09004 * 109.47401 * 180.02562 * 3 2 1 31 31 H 1.09009 * 109.46984 * 299.99257 * 3 2 1 32 32 H 1.08997 * 109.47995 * 59.99709 * 3 2 1 33 33 H 1.08999 * 113.60959 * 105.47385 * 6 4 2 34 34 H 1.09001 * 113.61169 * 334.57216 * 6 4 2 35 35 H 1.08996 * 113.61070 * 270.88162 * 7 6 4 36 36 H 1.09002 * 113.61225 * 139.98223 * 7 6 4 37 37 H 0.96998 * 120.00468 * 75.49539 * 10 8 7 38 38 H 1.08000 * 120.00158 * 0.03951 * 12 11 10 39 39 H 1.08005 * 119.99218 * 180.02562 * 13 12 11 40 40 H 0.96998 * 120.00178 * 179.97438 * 19 18 16 41 41 H 1.07996 * 119.99981 * 179.74416 * 24 14 13 42 42 H 1.08006 * 119.99701 * 180.23253 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 1.8771 -0.1514 2.1643 6 6 3.4726 -1.2616 1.1069 7 6 2.9921 -2.5116 1.8629 8 6 1.5810 -2.1857 1.3457 9 1 1.3546 -2.6382 0.3802 10 7 0.5266 -2.4062 2.3385 11 6 -0.3036 -3.5263 2.2393 12 6 -1.3041 -3.7353 3.1806 13 6 -2.1233 -4.8417 3.0826 14 6 -1.9481 -5.7460 2.0430 15 8 -2.7546 -6.8342 1.9467 16 6 -3.7762 -6.9184 2.8222 17 1 -3.8756 -6.1843 3.6082 18 6 -4.6991 -7.9470 2.7137 19 7 -5.6960 -8.0293 3.5686 20 14 -4.5268 -9.2169 1.3547 21 1 -5.2679 -8.7587 0.1521 22 1 -5.0846 -10.5138 1.8154 23 1 -3.0910 -9.3878 1.0160 24 6 -0.9447 -5.5401 1.1049 25 6 -0.1283 -4.4313 1.1996 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5140 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6767 1.9565 0.8899 33 1 4.2151 -0.6797 1.6529 34 1 3.7638 -1.4602 0.0755 35 1 3.0896 -2.4314 2.9455 36 1 3.3974 -3.4433 1.4682 37 1 0.4045 -1.7749 3.0647 38 1 -1.4408 -3.0319 3.9886 39 1 -2.9013 -5.0040 3.8140 40 1 -6.3420 -8.7489 3.4924 41 1 -0.8059 -6.2455 0.2990 42 1 0.6495 -4.2693 0.4679 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324349729.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:20 Heat of formation + Delta-G solvation = -7.709871 kcal Electronic energy + Delta-G solvation = -20846.711418 eV Core-core repulsion = 17791.903324 eV Total energy + Delta-G solvation = -3054.808094 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.05886 -40.35426 -38.38693 -35.38193 -34.47748 -33.88126 -31.81028 -29.20475 -28.00941 -27.04601 -26.24865 -25.11496 -23.65960 -22.26265 -21.25673 -20.56180 -19.58662 -19.06858 -17.69823 -17.20830 -16.33081 -16.16445 -15.57303 -15.47797 -15.32603 -15.08251 -14.62012 -14.35696 -14.18442 -13.93780 -13.80950 -13.62293 -13.56363 -13.15890 -13.01404 -12.83585 -12.82083 -12.46186 -12.34325 -12.08722 -11.92120 -11.78144 -11.48092 -11.18498 -11.12132 -11.03984 -10.82588 -10.15082 -9.79044 -8.43109 -7.93153 -6.10597 0.57316 0.90189 1.33330 1.38226 1.55007 2.33201 2.70731 2.85088 3.17737 3.30699 3.60235 3.77078 3.84657 4.07058 4.13114 4.14936 4.23635 4.35590 4.54238 4.57082 4.61398 4.73115 4.77062 4.85477 4.90143 4.91927 5.02769 5.08564 5.09881 5.15634 5.22597 5.25507 5.30322 5.34940 5.46482 5.48954 5.52097 5.61138 5.67580 5.85623 5.88211 6.16822 6.67289 6.92793 7.05324 7.73712 8.69475 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.034856 B = 0.003365 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.119491 B = 8318.575620 C = 8392.499467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.083 4.083 3 C -0.142 4.142 4 C -0.101 4.101 5 H 0.093 0.907 6 C -0.124 4.124 7 C -0.161 4.161 8 C 0.133 3.867 9 H 0.097 0.903 10 N -0.731 5.731 11 C 0.165 3.835 12 C -0.154 4.154 13 C -0.187 4.187 14 C 0.064 3.936 15 O -0.255 6.255 16 C -0.391 4.391 17 H 0.077 0.923 18 C 0.004 3.996 19 N -0.932 5.932 20 Si 0.972 3.028 21 H -0.267 1.267 22 H -0.269 1.269 23 H -0.263 1.263 24 C -0.142 4.142 25 C -0.149 4.149 26 H 0.042 0.958 27 H 0.049 0.951 28 H 0.053 0.947 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.078 0.922 36 H 0.065 0.935 37 H 0.401 0.599 38 H 0.132 0.868 39 H 0.106 0.894 40 H 0.282 0.718 41 H 0.127 0.873 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.351 17.467 -7.324 27.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.101 4.101 3 C -0.200 4.200 4 C -0.120 4.120 5 H 0.111 0.889 6 C -0.162 4.162 7 C -0.200 4.200 8 C 0.028 3.972 9 H 0.115 0.885 10 N -0.362 5.362 11 C 0.064 3.936 12 C -0.176 4.176 13 C -0.206 4.206 14 C 0.016 3.984 15 O -0.164 6.164 16 C -0.467 4.467 17 H 0.094 0.906 18 C -0.193 4.193 19 N -0.575 5.575 20 Si 0.794 3.206 21 H -0.192 1.192 22 H -0.194 1.194 23 H -0.188 1.188 24 C -0.161 4.161 25 C -0.171 4.171 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.098 0.902 34 H 0.108 0.892 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.236 0.764 38 H 0.150 0.850 39 H 0.124 0.876 40 H 0.091 0.909 41 H 0.145 0.855 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 19.304 17.172 -7.558 26.919 hybrid contribution -0.846 -0.479 0.473 1.081 sum 18.458 16.693 -7.085 25.875 Atomic orbital electron populations 1.21778 0.95917 1.01149 1.01335 1.21078 0.94987 0.96744 0.97339 1.21781 1.01329 0.95152 1.01696 1.23019 0.95974 0.94116 0.98926 0.88851 1.22764 0.95760 0.96418 1.01252 1.23490 0.96899 0.98890 1.00736 1.22578 0.85596 0.96680 0.92380 0.88486 1.44414 1.35359 1.24666 1.31763 1.17581 0.91863 0.89599 0.94572 1.20459 0.97408 0.98701 1.01057 1.21061 1.02562 0.97120 0.99892 1.19443 0.93840 0.88496 0.96632 1.83496 1.38744 1.39271 1.54901 1.20673 1.03013 1.13983 1.09070 0.90563 1.25256 0.93859 0.99807 1.00398 1.69753 1.14846 1.34662 1.38205 0.85195 0.79235 0.77649 0.78474 1.19195 1.19419 1.18756 1.20287 0.96449 1.00146 0.99232 1.20501 1.02174 0.94548 0.99895 0.93904 0.93217 0.92795 0.90919 0.91926 0.92695 0.92901 0.90231 0.89173 0.90339 0.91617 0.76385 0.85039 0.87618 0.90858 0.85485 0.83654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 8.99 71.98 0.65 -1.78 16 2 C -0.08 -1.10 2.67 -10.80 -0.03 -1.13 16 3 C -0.14 -1.58 9.19 71.98 0.66 -0.92 16 4 C -0.10 -1.34 2.87 -10.26 -0.03 -1.37 16 5 H 0.09 1.22 8.11 -2.39 -0.02 1.20 16 6 C -0.12 -1.42 7.63 31.12 0.24 -1.19 16 7 C -0.16 -2.50 7.88 31.12 0.25 -2.25 16 8 C 0.13 2.33 2.56 45.52 0.12 2.45 16 9 H 0.10 1.81 6.22 -2.38 -0.01 1.79 16 10 N -0.73 -16.05 5.55 -316.32 -1.75 -17.81 16 11 C 0.17 5.06 6.66 38.21 0.25 5.32 16 12 C -0.15 -5.49 9.89 22.39 0.22 -5.27 16 13 C -0.19 -8.50 9.16 22.37 0.20 -8.30 16 14 C 0.06 3.12 6.65 22.59 0.15 3.27 16 15 O -0.26 -14.41 8.58 -22.99 -0.20 -14.61 16 16 C -0.39 -23.88 9.94 67.91 0.68 -23.20 16 17 H 0.08 4.88 5.43 -2.91 -0.02 4.87 16 18 C 0.00 0.21 5.49 84.82 0.47 0.68 16 19 N -0.93 -57.59 13.96 21.61 0.30 -57.28 16 20 Si 0.97 47.12 28.61 68.60 1.96 49.08 16 21 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 22 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 23 H -0.26 -12.72 7.11 99.48 0.71 -12.01 16 24 C -0.14 -5.60 9.98 22.38 0.22 -5.37 16 25 C -0.15 -4.76 9.25 22.39 0.21 -4.55 16 26 H 0.04 0.88 7.45 -2.39 -0.02 0.86 16 27 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 28 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.07 0.94 7.94 -2.39 -0.02 0.92 16 30 H 0.06 0.59 8.14 -2.38 -0.02 0.58 16 31 H 0.05 0.59 8.14 -2.38 -0.02 0.58 16 32 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.09 0.92 7.96 -2.39 -0.02 0.90 16 35 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.40 7.69 8.71 -92.71 -0.81 6.89 16 38 H 0.13 3.98 8.06 -2.91 -0.02 3.95 16 39 H 0.11 5.31 5.63 -2.91 -0.02 5.29 16 40 H 0.28 15.99 8.31 -92.71 -0.77 15.22 16 41 H 0.13 4.64 8.06 -2.91 -0.02 4.62 16 42 H 0.15 3.67 6.10 -2.91 -0.02 3.66 16 Total: -1.00 -67.58 339.97 4.77 -62.81 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: 0.20 Total: 21.42 kcal Atomic # 6 Polarization: -47.86 SS G_CDS: 4.25 Total: -43.61 kcal Atomic # 7 Polarization: -73.64 SS G_CDS: -1.45 Total: -75.09 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: -0.20 Total: -14.61 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 1.96 Total: 49.08 kcal Total: -67.58 4.77 -62.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324349729.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.104 kcal (2) G-P(sol) polarization free energy of solvation -67.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds