Wall clock time and date at job start Mon Mar 30 2020 02:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47166 * 2 1 4 4 C 1.50708 * 109.47108 * 120.00024 * 2 1 3 5 5 C 1.38257 * 119.99575 * 300.02395 * 4 2 1 6 6 C 1.38223 * 119.99672 * 180.02562 * 5 4 2 7 7 C 1.38252 * 119.99766 * 359.95468 * 6 5 4 8 8 C 1.38213 * 120.00022 * 359.78984 * 7 6 5 9 9 C 1.38203 * 120.00062 * 120.00032 * 4 2 1 10 10 C 1.50704 * 120.00097 * 0.02562 * 9 4 2 11 11 N 1.46903 * 109.47018 * 80.00243 * 10 9 4 12 12 C 1.47957 * 111.00079 * 170.00106 * 11 10 9 13 13 C 1.53937 * 86.18208 * 222.41605 * 12 11 10 14 14 O 1.42896 * 113.73148 * 269.25755 * 13 12 11 15 15 C 1.50694 * 113.73443 * 138.07827 * 13 12 11 16 16 H 1.08000 * 120.00563 * 0.02562 * 15 13 12 17 17 C 1.37885 * 119.99902 * 180.02562 * 15 13 12 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 13 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.46985 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47276 * 299.99832 * 19 17 15 22 22 H 1.48498 * 109.47150 * 60.00043 * 19 17 15 23 23 C 1.47958 * 111.00224 * 70.63784 * 11 10 9 24 24 H 1.08997 * 109.46963 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47219 * 300.00245 * 1 2 3 26 26 H 1.09001 * 109.46698 * 59.99913 * 1 2 3 27 27 H 1.08998 * 109.47219 * 239.99755 * 2 1 3 28 28 H 1.09002 * 109.47030 * 179.97438 * 3 2 1 29 29 H 1.08993 * 109.47278 * 299.99965 * 3 2 1 30 30 H 1.09004 * 109.46880 * 59.99968 * 3 2 1 31 31 H 1.07996 * 120.00552 * 359.97438 * 5 4 2 32 32 H 1.07999 * 119.99908 * 179.97438 * 6 5 4 33 33 H 1.07996 * 119.99554 * 180.02562 * 7 6 5 34 34 H 1.08008 * 119.99901 * 180.25360 * 8 7 6 35 35 H 1.08997 * 109.47128 * 320.00287 * 10 9 4 36 36 H 1.08999 * 109.47288 * 199.99545 * 10 9 4 37 37 H 1.08999 * 113.76060 * 108.09601 * 12 11 10 38 38 H 1.09001 * 113.85944 * 336.74419 * 12 11 10 39 39 H 0.96709 * 114.00030 * 178.09403 * 14 13 12 40 40 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 41 41 H 1.09003 * 113.76031 * 23.26533 * 23 11 10 42 42 H 1.08999 * 113.76380 * 251.90073 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2305 5 6 1.6979 -0.2383 2.4862 6 6 2.1591 -0.8896 3.6148 7 6 2.9540 -2.0136 3.4879 8 6 3.2839 -2.4886 2.2326 9 6 2.8269 -1.8341 1.1037 10 6 3.1915 -2.3487 -0.2650 11 7 4.2977 -1.5501 -0.8097 12 6 4.8417 -2.1670 -2.0396 13 6 6.2315 -1.8257 -1.4727 14 8 6.7178 -0.5437 -1.8751 15 6 7.2476 -2.9233 -1.6561 16 1 6.9667 -3.8426 -2.1485 17 6 8.5361 -2.7541 -1.1953 18 7 8.8784 -1.6345 -0.5961 19 14 9.7955 -4.1150 -1.4220 20 1 11.0951 -3.6880 -0.8442 21 1 9.3263 -5.3435 -0.7323 22 1 9.9663 -4.3950 -2.8703 23 6 5.5588 -1.8292 -0.0881 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 3.1301 1.4425 0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.0771 0.6398 2.5853 32 1 1.8982 -0.5206 4.5957 33 1 3.3139 -2.5227 4.3697 34 1 3.9015 -3.3691 2.1335 35 1 2.3274 -2.2702 -0.9247 36 1 3.4987 -3.3919 -0.1911 37 1 4.5933 -1.6229 -2.9508 38 1 4.6500 -3.2372 -2.1179 39 1 7.5778 -0.3130 -1.4977 40 1 9.7848 -1.5156 -0.2716 41 1 5.5762 -2.8006 0.4062 42 1 5.8835 -1.0151 0.5599 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326890276.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:22 Heat of formation + Delta-G solvation = -1.692289 kcal Electronic energy + Delta-G solvation = -21899.065237 eV Core-core repulsion = 18844.518085 eV Total energy + Delta-G solvation = -3054.547152 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.87817 -38.48352 -35.14574 -34.38050 -32.08223 -31.70073 -29.57884 -27.86460 -26.93588 -25.63874 -25.01346 -23.23904 -22.59890 -20.71047 -19.51459 -18.53630 -17.23395 -16.37865 -15.57621 -15.13700 -14.97467 -14.75143 -14.13879 -13.90331 -13.73169 -13.51172 -13.27833 -13.18749 -12.38025 -12.26289 -12.19920 -11.98492 -11.82643 -11.65890 -11.43659 -11.25653 -10.95403 -10.91738 -10.80580 -10.60230 -10.42646 -10.36319 -10.05965 -9.93925 -9.35110 -8.66118 -8.51337 -8.35955 -8.11028 -7.76891 -6.24426 -4.34379 1.62882 1.65792 3.21182 3.26833 3.29084 3.99608 4.26529 4.87120 4.89082 4.98123 5.04897 5.14725 5.26719 5.31610 5.42783 5.52954 5.64182 5.72257 5.78893 5.85698 5.90419 5.97551 6.01641 6.05803 6.09624 6.18405 6.30864 6.32551 6.35663 6.46931 6.50260 6.57792 6.71438 6.73767 6.77751 7.02587 7.09321 7.21697 7.29507 7.38388 7.77982 7.99713 8.03603 8.66839 9.35507 9.67952 10.81209 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.023196 B = 0.005083 C = 0.004628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.838510 B = 5506.747581 C = 6049.039138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.060 4.060 3 C -0.137 4.137 4 C -0.054 4.054 5 C -0.121 4.121 6 C -0.127 4.127 7 C -0.128 4.128 8 C -0.109 4.109 9 C -0.064 4.064 10 C 0.054 3.946 11 N -0.468 5.468 12 C 0.006 3.994 13 C 0.245 3.755 14 O -0.572 6.572 15 C -0.538 4.538 16 H 0.064 0.936 17 C 0.072 3.928 18 N -0.897 5.897 19 Si 0.902 3.098 20 H -0.285 1.285 21 H -0.276 1.276 22 H -0.274 1.274 23 C -0.006 4.006 24 H 0.051 0.949 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.092 0.908 28 H 0.065 0.935 29 H 0.052 0.948 30 H 0.046 0.954 31 H 0.116 0.884 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.118 0.882 35 H 0.075 0.925 36 H 0.041 0.959 37 H 0.075 0.925 38 H 0.064 0.936 39 H 0.388 0.612 40 H 0.271 0.729 41 H 0.057 0.943 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.211 1.133 5.263 14.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.078 4.078 3 C -0.194 4.194 4 C -0.054 4.054 5 C -0.139 4.139 6 C -0.145 4.145 7 C -0.146 4.146 8 C -0.128 4.128 9 C -0.065 4.065 10 C -0.074 4.074 11 N -0.190 5.190 12 C -0.122 4.122 13 C 0.203 3.797 14 O -0.384 6.384 15 C -0.576 4.576 16 H 0.082 0.918 17 C -0.130 4.130 18 N -0.538 5.538 19 Si 0.729 3.271 20 H -0.210 1.210 21 H -0.201 1.201 22 H -0.200 1.200 23 C -0.136 4.136 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.110 0.890 28 H 0.084 0.916 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.134 0.866 32 H 0.133 0.867 33 H 0.134 0.866 34 H 0.136 0.864 35 H 0.093 0.907 36 H 0.060 0.940 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.243 0.757 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.884 1.905 4.994 14.877 hybrid contribution 1.497 -1.677 0.569 2.319 sum -12.387 0.228 5.562 13.580 Atomic orbital electron populations 1.21871 0.95284 1.01422 1.01402 1.20173 0.94587 0.96525 0.96534 1.21758 1.02372 0.94609 1.00661 1.19656 0.96660 0.94577 0.94521 1.20899 1.00983 0.99945 0.92091 1.21017 0.98986 0.96358 0.98120 1.21021 0.99237 0.97204 0.97108 1.21078 0.99359 1.00160 0.92206 1.19691 0.96700 0.95232 0.94858 1.21621 0.97415 0.95757 0.92651 1.68668 1.02761 1.43224 1.04363 1.24163 0.96568 0.97090 0.94407 1.19732 0.88908 0.83128 0.87897 1.86034 1.42398 1.35408 1.74538 1.21622 0.95637 1.01678 1.38688 0.91813 1.25045 0.98363 0.96030 0.93578 1.69344 1.20158 1.25256 1.39041 0.86492 0.80127 0.81757 0.78685 1.21021 1.20117 1.19966 1.24630 0.89517 0.98944 1.00464 0.92990 0.92936 0.92650 0.89020 0.91587 0.92896 0.93468 0.86619 0.86717 0.86589 0.86412 0.90671 0.94038 0.90688 0.91835 0.75673 0.91862 0.92504 0.91278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.01 37.16 0.33 -1.27 16 2 C -0.06 -0.83 2.89 -91.77 -0.26 -1.10 16 3 C -0.14 -1.87 9.01 37.16 0.33 -1.54 16 4 C -0.05 -0.81 4.78 -104.62 -0.50 -1.31 16 5 C -0.12 -1.66 8.71 -39.58 -0.34 -2.00 16 6 C -0.13 -1.67 10.05 -39.58 -0.40 -2.07 16 7 C -0.13 -1.79 10.05 -39.59 -0.40 -2.18 16 8 C -0.11 -1.73 9.49 -39.58 -0.38 -2.10 16 9 C -0.06 -1.06 4.96 -104.63 -0.52 -1.58 16 10 C 0.05 0.93 4.07 -4.97 -0.02 0.90 16 11 N -0.47 -9.61 6.11 -239.69 -1.46 -11.07 16 12 C 0.01 0.14 7.36 -2.77 -0.02 0.12 16 13 C 0.24 6.19 1.44 -90.84 -0.13 6.06 16 14 O -0.57 -15.55 13.48 -35.23 -0.47 -16.03 16 15 C -0.54 -14.34 8.62 -34.44 -0.30 -14.64 16 16 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 17 C 0.07 1.90 5.40 -17.82 -0.10 1.80 16 18 N -0.90 -24.20 11.09 55.43 0.61 -23.58 16 19 Si 0.90 20.43 29.54 -169.99 -5.02 15.41 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 22 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 23 C -0.01 -0.15 6.71 -2.77 -0.02 -0.17 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.54 7.39 -51.93 -0.38 0.16 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.09 1.41 5.58 -51.93 -0.29 1.12 16 28 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.57 7.39 -51.93 -0.38 0.19 16 31 H 0.12 1.35 7.10 -52.49 -0.37 0.98 16 32 H 0.11 1.22 8.06 -52.49 -0.42 0.79 16 33 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 34 H 0.12 1.81 8.04 -52.48 -0.42 1.38 16 35 H 0.08 1.19 6.69 -51.93 -0.35 0.84 16 36 H 0.04 0.72 7.55 -51.93 -0.39 0.32 16 37 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 38 H 0.06 1.29 7.75 -51.93 -0.40 0.89 16 39 H 0.39 10.77 6.46 45.56 0.29 11.06 16 40 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 41 H 0.06 1.31 7.73 -51.93 -0.40 0.91 16 42 H 0.07 1.73 8.14 -51.93 -0.42 1.31 16 LS Contribution 336.83 15.07 5.08 5.08 Total: -1.00 -27.68 336.83 -10.01 -37.69 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: -6.03 Total: 13.58 kcal Atomic # 6 Polarization: -18.35 SS G_CDS: -2.71 Total: -21.07 kcal Atomic # 7 Polarization: -33.81 SS G_CDS: -0.85 Total: -34.66 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: -0.47 Total: -16.03 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -27.68 -10.01 -37.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326890276.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.001 kcal (2) G-P(sol) polarization free energy of solvation -27.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds