Wall clock time and date at job start Mon Mar 30 2020 02:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47166 * 2 1 4 4 C 1.50708 * 109.47108 * 120.00024 * 2 1 3 5 5 C 1.38257 * 119.99575 * 300.02395 * 4 2 1 6 6 C 1.38223 * 119.99672 * 180.02562 * 5 4 2 7 7 C 1.38252 * 119.99766 * 359.95468 * 6 5 4 8 8 C 1.38213 * 120.00022 * 359.78984 * 7 6 5 9 9 C 1.38203 * 120.00062 * 120.00032 * 4 2 1 10 10 C 1.50704 * 120.00097 * 0.02562 * 9 4 2 11 11 N 1.46903 * 109.47018 * 80.00243 * 10 9 4 12 12 C 1.47957 * 111.00079 * 170.00106 * 11 10 9 13 13 C 1.53937 * 86.18208 * 222.41605 * 12 11 10 14 14 O 1.42896 * 113.73148 * 269.25755 * 13 12 11 15 15 C 1.50694 * 113.73443 * 138.07827 * 13 12 11 16 16 H 1.08000 * 120.00563 * 0.02562 * 15 13 12 17 17 C 1.37885 * 119.99902 * 180.02562 * 15 13 12 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 13 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.46985 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47276 * 299.99832 * 19 17 15 22 22 H 1.48498 * 109.47150 * 60.00043 * 19 17 15 23 23 C 1.47958 * 111.00224 * 70.63784 * 11 10 9 24 24 H 1.08997 * 109.46963 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47219 * 300.00245 * 1 2 3 26 26 H 1.09001 * 109.46698 * 59.99913 * 1 2 3 27 27 H 1.08998 * 109.47219 * 239.99755 * 2 1 3 28 28 H 1.09002 * 109.47030 * 179.97438 * 3 2 1 29 29 H 1.08993 * 109.47278 * 299.99965 * 3 2 1 30 30 H 1.09004 * 109.46880 * 59.99968 * 3 2 1 31 31 H 1.07996 * 120.00552 * 359.97438 * 5 4 2 32 32 H 1.07999 * 119.99908 * 179.97438 * 6 5 4 33 33 H 1.07996 * 119.99554 * 180.02562 * 7 6 5 34 34 H 1.08008 * 119.99901 * 180.25360 * 8 7 6 35 35 H 1.08997 * 109.47128 * 320.00287 * 10 9 4 36 36 H 1.08999 * 109.47288 * 199.99545 * 10 9 4 37 37 H 1.08999 * 113.76060 * 108.09601 * 12 11 10 38 38 H 1.09001 * 113.85944 * 336.74419 * 12 11 10 39 39 H 0.96709 * 114.00030 * 178.09403 * 14 13 12 40 40 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 41 41 H 1.09003 * 113.76031 * 23.26533 * 23 11 10 42 42 H 1.08999 * 113.76380 * 251.90073 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2305 5 6 1.6979 -0.2383 2.4862 6 6 2.1591 -0.8896 3.6148 7 6 2.9540 -2.0136 3.4879 8 6 3.2839 -2.4886 2.2326 9 6 2.8269 -1.8341 1.1037 10 6 3.1915 -2.3487 -0.2650 11 7 4.2977 -1.5501 -0.8097 12 6 4.8417 -2.1670 -2.0396 13 6 6.2315 -1.8257 -1.4727 14 8 6.7178 -0.5437 -1.8751 15 6 7.2476 -2.9233 -1.6561 16 1 6.9667 -3.8426 -2.1485 17 6 8.5361 -2.7541 -1.1953 18 7 8.8784 -1.6345 -0.5961 19 14 9.7955 -4.1150 -1.4220 20 1 11.0951 -3.6880 -0.8442 21 1 9.3263 -5.3435 -0.7323 22 1 9.9663 -4.3950 -2.8703 23 6 5.5588 -1.8292 -0.0881 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 3.1301 1.4425 0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.0771 0.6398 2.5853 32 1 1.8982 -0.5206 4.5957 33 1 3.3139 -2.5227 4.3697 34 1 3.9015 -3.3691 2.1335 35 1 2.3274 -2.2702 -0.9247 36 1 3.4987 -3.3919 -0.1911 37 1 4.5933 -1.6229 -2.9508 38 1 4.6500 -3.2372 -2.1179 39 1 7.5778 -0.3130 -1.4977 40 1 9.7848 -1.5156 -0.2716 41 1 5.5762 -2.8006 0.4062 42 1 5.8835 -1.0151 0.5599 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326890276.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:22 Heat of formation + Delta-G solvation = -19.165536 kcal Electronic energy + Delta-G solvation = -21899.822934 eV Core-core repulsion = 18844.518085 eV Total energy + Delta-G solvation = -3055.304849 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.26645 -40.01643 -36.30579 -36.16703 -34.11547 -33.10429 -30.67929 -29.50139 -27.91744 -27.39811 -26.82071 -24.34502 -24.17211 -21.98312 -20.69567 -20.36962 -19.21322 -17.54267 -17.08203 -16.89143 -16.68712 -15.97692 -15.85267 -15.55107 -14.90541 -14.76055 -14.45975 -14.36505 -14.06809 -13.80008 -13.60774 -13.32110 -13.24564 -12.93625 -12.88303 -12.84141 -12.61223 -12.47907 -12.26667 -12.04388 -11.97097 -11.91176 -11.43909 -11.22487 -11.17466 -10.64368 -10.14821 -9.69465 -9.54388 -9.40412 -8.24544 -6.42797 0.49185 0.54341 1.41595 1.43031 1.51171 2.36455 2.83672 2.96584 3.27503 3.74122 3.88196 3.97286 4.04951 4.18658 4.24548 4.31309 4.34624 4.41331 4.45767 4.55575 4.58264 4.66738 4.67989 4.78803 4.85186 4.90979 5.00823 5.02868 5.14165 5.17417 5.21215 5.27871 5.39596 5.41511 5.46645 5.49511 5.65188 5.69560 5.74724 5.88783 5.98694 6.18252 6.32642 6.62177 7.30173 7.53369 8.79904 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.023196 B = 0.005083 C = 0.004628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.838510 B = 5506.747581 C = 6049.039138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.060 4.060 3 C -0.132 4.132 4 C -0.063 4.063 5 C -0.125 4.125 6 C -0.123 4.123 7 C -0.134 4.134 8 C -0.128 4.128 9 C -0.091 4.091 10 C 0.058 3.942 11 N -0.465 5.465 12 C 0.016 3.984 13 C 0.218 3.782 14 O -0.584 6.584 15 C -0.561 4.561 16 H 0.064 0.936 17 C 0.028 3.972 18 N -0.919 5.919 19 Si 0.966 3.034 20 H -0.281 1.281 21 H -0.270 1.270 22 H -0.271 1.271 23 C 0.011 3.989 24 H 0.051 0.949 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.030 0.970 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.140 0.860 32 H 0.146 0.854 33 H 0.137 0.863 34 H 0.112 0.888 35 H 0.090 0.910 36 H 0.039 0.961 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.382 0.618 40 H 0.273 0.727 41 H 0.053 0.947 42 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.609 0.941 6.159 15.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.078 4.078 3 C -0.190 4.190 4 C -0.064 4.064 5 C -0.142 4.142 6 C -0.141 4.141 7 C -0.152 4.152 8 C -0.146 4.146 9 C -0.091 4.091 10 C -0.069 4.069 11 N -0.187 5.187 12 C -0.113 4.113 13 C 0.177 3.823 14 O -0.396 6.396 15 C -0.599 4.599 16 H 0.082 0.918 17 C -0.172 4.172 18 N -0.560 5.560 19 Si 0.791 3.209 20 H -0.206 1.206 21 H -0.195 1.195 22 H -0.196 1.196 23 C -0.119 4.119 24 H 0.070 0.930 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.089 0.911 28 H 0.050 0.950 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.157 0.843 32 H 0.164 0.836 33 H 0.155 0.845 34 H 0.130 0.870 35 H 0.108 0.892 36 H 0.058 0.942 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.235 0.765 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -15.304 1.709 5.885 16.485 hybrid contribution 1.888 -1.575 0.329 2.480 sum -13.416 0.134 6.213 14.785 Atomic orbital electron populations 1.21810 0.92939 1.01856 1.02650 1.20160 0.96483 0.96003 0.95190 1.21714 1.00057 0.95045 1.02143 1.19879 0.96456 0.94231 0.95784 1.21211 1.00927 1.00553 0.91554 1.21421 0.97661 0.95494 0.99493 1.21317 0.99190 0.97678 0.97035 1.21196 0.99896 1.00433 0.93103 1.19712 0.98411 0.96667 0.94319 1.21601 0.96424 0.95079 0.93815 1.68572 1.02573 1.44098 1.03447 1.24089 0.94366 0.97977 0.94861 1.20125 0.90256 0.82178 0.89720 1.86018 1.42036 1.36647 1.74853 1.21898 0.96637 1.02132 1.39225 0.91769 1.25807 1.00092 0.98185 0.93132 1.69432 1.20590 1.26663 1.39356 0.85485 0.77705 0.79081 0.78618 1.20575 1.19470 1.19646 1.24276 0.90918 0.97616 0.99047 0.92977 0.91604 0.91480 0.91090 0.95034 0.91702 0.91726 0.84258 0.83600 0.84525 0.87034 0.89174 0.94228 0.90459 0.90463 0.76465 0.91685 0.92842 0.93892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 9.01 71.98 0.65 -2.06 16 2 C -0.06 -1.59 2.89 -11.54 -0.03 -1.62 16 3 C -0.13 -3.48 9.01 71.98 0.65 -2.83 16 4 C -0.06 -1.83 4.78 -19.87 -0.09 -1.92 16 5 C -0.12 -3.10 8.71 22.27 0.19 -2.91 16 6 C -0.12 -2.90 10.05 22.27 0.22 -2.67 16 7 C -0.13 -3.54 10.05 22.27 0.22 -3.32 16 8 C -0.13 -4.00 9.49 22.27 0.21 -3.79 16 9 C -0.09 -2.97 4.96 -19.87 -0.10 -3.07 16 10 C 0.06 2.02 4.07 85.56 0.35 2.37 16 11 N -0.46 -19.39 6.11 -915.44 -5.59 -24.98 16 12 C 0.02 0.68 7.36 86.41 0.64 1.32 16 13 C 0.22 11.28 1.44 -10.89 -0.02 11.26 16 14 O -0.58 -32.76 13.48 -148.98 -2.01 -34.77 16 15 C -0.56 -30.27 8.62 25.60 0.22 -30.05 16 16 H 0.06 3.36 7.81 -2.91 -0.02 3.34 16 17 C 0.03 1.47 5.40 84.66 0.46 1.92 16 18 N -0.92 -50.41 11.09 21.45 0.24 -50.17 16 19 Si 0.97 41.88 29.54 68.60 2.03 43.91 16 20 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 21 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 22 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 23 C 0.01 0.53 6.71 86.41 0.58 1.11 16 24 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.06 1.14 7.39 -2.39 -0.02 1.12 16 26 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.07 2.16 5.58 -2.39 -0.01 2.14 16 28 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.06 1.44 7.39 -2.38 -0.02 1.42 16 31 H 0.14 2.75 7.10 -2.91 -0.02 2.73 16 32 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 33 H 0.14 2.94 8.06 -2.91 -0.02 2.91 16 34 H 0.11 3.50 8.04 -2.91 -0.02 3.47 16 35 H 0.09 2.82 6.69 -2.39 -0.02 2.80 16 36 H 0.04 1.37 7.55 -2.39 -0.02 1.36 16 37 H 0.08 3.31 8.14 -2.39 -0.02 3.29 16 38 H 0.08 3.12 7.75 -2.39 -0.02 3.10 16 39 H 0.38 21.97 6.46 -74.05 -0.48 21.49 16 40 H 0.27 14.18 8.31 -92.71 -0.77 13.41 16 41 H 0.05 2.55 7.73 -2.39 -0.02 2.53 16 42 H 0.04 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -59.77 336.83 -0.66 -60.43 By element: Atomic # 1 Polarization: 41.31 SS G_CDS: 0.52 Total: 41.83 kcal Atomic # 6 Polarization: -40.41 SS G_CDS: 4.15 Total: -36.26 kcal Atomic # 7 Polarization: -69.79 SS G_CDS: -5.35 Total: -75.14 kcal Atomic # 8 Polarization: -32.76 SS G_CDS: -2.01 Total: -34.77 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Total: -59.77 -0.66 -60.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326890276.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.264 kcal (2) G-P(sol) polarization free energy of solvation -59.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds