Wall clock time and date at job start Mon Mar 30 2020 02:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47078 * 2 1 4 4 C 1.50699 * 109.46958 * 119.99885 * 2 1 3 5 5 C 1.38253 * 119.99844 * 300.00031 * 4 2 1 6 6 C 1.38224 * 120.00271 * 180.02562 * 5 4 2 7 7 C 1.38255 * 119.99203 * 359.97438 * 6 5 4 8 8 C 1.38211 * 120.00572 * 0.02562 * 7 6 5 9 9 C 1.50703 * 119.99948 * 179.97438 * 8 7 6 10 10 N 1.46897 * 109.46834 * 90.00358 * 9 8 7 11 11 C 1.47962 * 111.00037 * 169.99844 * 10 9 8 12 12 C 1.53935 * 86.30001 * 222.47236 * 11 10 9 13 13 O 1.42900 * 113.73067 * 269.30150 * 12 11 10 14 14 C 1.50698 * 113.73422 * 138.13301 * 12 11 10 15 15 H 1.08001 * 120.00041 * 359.97438 * 14 12 11 16 16 C 1.37873 * 120.00462 * 179.97438 * 14 12 11 17 17 N 1.31522 * 119.99911 * 359.97438 * 16 14 12 18 18 Si 1.86799 * 120.00574 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.47136 * 89.99847 * 18 16 14 20 20 H 1.48492 * 109.47423 * 209.99956 * 18 16 14 21 21 H 1.48500 * 109.46713 * 330.00009 * 18 16 14 22 22 C 1.48187 * 111.07743 * 70.70783 * 10 9 8 23 23 C 1.38210 * 119.99997 * 120.27458 * 4 2 1 24 24 H 1.09001 * 109.47403 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47166 * 300.00438 * 1 2 3 26 26 H 1.09003 * 109.47074 * 60.00199 * 1 2 3 27 27 H 1.08998 * 109.46718 * 239.99523 * 2 1 3 28 28 H 1.08996 * 109.47057 * 179.97438 * 3 2 1 29 29 H 1.09003 * 109.47005 * 299.99843 * 3 2 1 30 30 H 1.08995 * 109.47193 * 59.99633 * 3 2 1 31 31 H 1.08000 * 120.00524 * 0.02562 * 5 4 2 32 32 H 1.07997 * 120.00260 * 179.97438 * 6 5 4 33 33 H 1.08008 * 119.99280 * 179.97438 * 7 6 5 34 34 H 1.08999 * 109.47078 * 330.00329 * 9 8 7 35 35 H 1.08999 * 109.46664 * 209.99738 * 9 8 7 36 36 H 1.09002 * 113.76087 * 108.09701 * 11 10 9 37 37 H 1.09005 * 113.75858 * 336.84163 * 11 10 9 38 38 H 0.96701 * 114.00009 * 179.97438 * 13 12 11 39 39 H 0.96996 * 120.00354 * 179.97438 * 17 16 14 40 40 H 1.09005 * 113.65869 * 23.13541 * 22 10 9 41 41 H 1.09002 * 113.92722 * 251.82174 * 22 10 9 42 42 H 1.08000 * 120.00450 * 359.97438 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6983 -0.2380 2.4861 6 6 2.1594 -0.8892 3.6148 7 6 2.9542 -2.0133 3.4879 8 6 3.2881 -2.4855 2.2326 9 6 4.1550 -3.7105 2.0945 10 7 3.3061 -4.9085 2.0497 11 6 4.0948 -6.1037 1.6771 12 6 2.9078 -6.4822 0.7731 13 8 1.9314 -7.3017 1.4190 14 6 3.3181 -7.0112 -0.5770 15 1 4.3649 -7.0935 -0.8294 16 6 2.3571 -7.3901 -1.4902 17 7 1.0822 -7.2904 -1.1827 18 14 2.8656 -8.0452 -3.1640 19 1 3.0231 -9.5201 -3.0914 20 1 1.8226 -7.7075 -4.1655 21 1 4.1555 -7.4288 -3.5656 22 6 2.5569 -4.9834 0.7734 23 6 2.8316 -1.8308 1.1037 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 1.0770 0.6399 2.5853 32 1 1.8988 -0.5199 4.5957 33 1 3.3148 -2.5219 4.3698 34 1 4.8307 -3.7756 2.9473 35 1 4.7361 -3.6425 1.1748 36 1 4.2574 -6.7974 2.5020 37 1 5.0084 -5.8735 1.1288 38 1 1.1837 -7.5415 0.8547 39 1 0.4060 -7.5566 -1.8252 40 1 3.0201 -4.4237 -0.0392 41 1 1.4904 -4.7821 0.8744 42 1 3.0958 -2.1975 0.1229 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327830158.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:26 Heat of formation + Delta-G solvation = -5.937902 kcal Electronic energy + Delta-G solvation = -21452.794016 eV Core-core repulsion = 18398.062760 eV Total energy + Delta-G solvation = -3054.731255 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.73328 -38.60213 -35.53850 -34.20004 -32.06771 -31.51065 -29.85909 -27.84834 -27.15873 -25.65665 -25.02251 -23.16959 -22.45754 -21.41628 -19.16927 -18.55149 -17.22704 -16.43027 -15.57201 -15.13605 -14.98841 -14.91364 -14.19924 -14.01575 -13.80088 -13.57224 -13.47472 -13.14718 -12.45102 -12.35303 -12.08802 -12.01977 -11.88876 -11.82634 -11.43826 -11.27754 -11.12355 -10.99044 -10.82757 -10.73051 -10.47427 -10.44155 -10.17015 -9.99637 -9.36404 -8.67594 -8.52184 -8.39426 -8.11270 -7.77278 -6.25310 -4.35645 1.61010 1.65280 3.19478 3.26921 3.29398 3.97491 4.25780 4.69934 4.82751 4.93233 5.01332 5.11408 5.20433 5.21562 5.34321 5.42955 5.57830 5.60789 5.71001 5.73427 5.78555 5.87565 5.92074 6.00758 6.01691 6.10819 6.16310 6.25176 6.31023 6.33473 6.35412 6.47379 6.69728 6.71341 6.82925 6.94451 7.08821 7.20185 7.28572 7.38039 7.77275 7.98574 8.02846 8.66150 9.34463 9.68264 10.80208 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.017880 B = 0.005062 C = 0.004332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.627911 B = 5529.827914 C = 6462.118060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.058 4.058 3 C -0.141 4.141 4 C -0.078 4.078 5 C -0.123 4.123 6 C -0.122 4.122 7 C -0.108 4.108 8 C -0.060 4.060 9 C 0.055 3.945 10 N -0.473 5.473 11 C 0.006 3.994 12 C 0.244 3.756 13 O -0.573 6.573 14 C -0.537 4.537 15 H 0.065 0.935 16 C 0.071 3.929 17 N -0.897 5.897 18 Si 0.902 3.098 19 H -0.277 1.277 20 H -0.284 1.284 21 H -0.273 1.273 22 C -0.006 4.006 23 C -0.107 4.107 24 H 0.059 0.941 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.077 0.923 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.115 0.885 32 H 0.116 0.884 33 H 0.119 0.881 34 H 0.073 0.927 35 H 0.043 0.957 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.389 0.611 39 H 0.271 0.729 40 H 0.057 0.943 41 H 0.070 0.930 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.481 14.465 3.510 14.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.076 4.076 3 C -0.199 4.199 4 C -0.078 4.078 5 C -0.142 4.142 6 C -0.140 4.140 7 C -0.126 4.126 8 C -0.061 4.061 9 C -0.074 4.074 10 N -0.195 5.195 11 C -0.122 4.122 12 C 0.202 3.798 13 O -0.384 6.384 14 C -0.576 4.576 15 H 0.083 0.917 16 C -0.131 4.131 17 N -0.538 5.538 18 Si 0.729 3.271 19 H -0.203 1.203 20 H -0.210 1.210 21 H -0.198 1.198 22 C -0.135 4.135 23 C -0.126 4.126 24 H 0.078 0.922 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.095 0.905 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.133 0.867 32 H 0.135 0.865 33 H 0.137 0.863 34 H 0.091 0.909 35 H 0.061 0.939 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.244 0.756 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.088 0.912 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 1.361 14.517 4.562 15.277 hybrid contribution 0.297 -0.262 -2.104 2.141 sum 1.658 14.255 2.458 14.560 Atomic orbital electron populations 1.21846 0.94388 1.02363 1.01457 1.20116 0.95996 0.95751 0.95743 1.21840 1.01109 0.95333 1.01576 1.19755 0.97705 0.95794 0.94499 1.20840 1.00969 1.00272 0.92075 1.21040 0.98582 0.96269 0.98150 1.20973 0.98587 0.96121 0.96963 1.19791 0.97841 0.95394 0.93059 1.21613 0.94606 0.90349 1.00788 1.68710 1.16498 1.00199 1.34115 1.24172 0.96829 0.92462 0.98749 1.19743 0.85112 0.86039 0.88886 1.86036 1.37324 1.70876 1.44202 1.21655 0.93608 1.43708 0.98590 0.91702 1.25053 0.94753 0.94257 0.98999 1.69350 0.99819 1.48007 1.36618 0.86432 0.78413 0.79401 0.82826 1.20301 1.20965 1.19760 1.24681 0.98594 1.01826 0.88434 1.21015 0.98026 0.95108 0.98402 0.92186 0.92667 0.92615 0.90470 0.92666 0.92608 0.92637 0.86740 0.86547 0.86326 0.90866 0.93885 0.90657 0.91775 0.75617 0.91888 0.92482 0.91187 0.86370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.01 37.16 0.33 -1.27 16 2 C -0.06 -0.69 3.09 -91.77 -0.28 -0.97 16 3 C -0.14 -1.39 9.01 37.16 0.33 -1.06 16 4 C -0.08 -1.09 4.78 -104.63 -0.50 -1.59 16 5 C -0.12 -1.62 8.71 -39.58 -0.34 -1.96 16 6 C -0.12 -1.64 10.05 -39.58 -0.40 -2.04 16 7 C -0.11 -1.63 9.70 -39.58 -0.38 -2.01 16 8 C -0.06 -1.01 5.12 -104.62 -0.54 -1.54 16 9 C 0.05 0.96 4.98 -4.98 -0.02 0.94 16 10 N -0.47 -10.08 6.26 -238.75 -1.49 -11.58 16 11 C 0.01 0.14 7.36 -2.77 -0.02 0.12 16 12 C 0.24 6.25 1.44 -90.84 -0.13 6.11 16 13 O -0.57 -15.78 13.49 -35.23 -0.48 -16.26 16 14 C -0.54 -14.38 8.63 -34.44 -0.30 -14.68 16 15 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 16 C 0.07 1.88 5.39 -17.82 -0.10 1.79 16 17 N -0.90 -24.20 11.08 55.43 0.61 -23.59 16 18 Si 0.90 20.39 29.54 -169.99 -5.02 15.37 16 19 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 21 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 22 C -0.01 -0.15 6.37 -2.65 -0.02 -0.16 16 23 C -0.11 -1.72 8.61 -39.58 -0.34 -2.06 16 24 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.05 0.57 7.39 -51.93 -0.38 0.19 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.08 0.95 7.88 -51.93 -0.41 0.54 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.51 7.39 -51.93 -0.38 0.13 16 31 H 0.11 1.25 7.10 -52.49 -0.37 0.88 16 32 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 33 H 0.12 1.66 8.06 -52.48 -0.42 1.23 16 34 H 0.07 1.17 8.09 -51.93 -0.42 0.75 16 35 H 0.04 0.75 7.63 -51.93 -0.40 0.35 16 36 H 0.07 1.64 8.14 -51.93 -0.42 1.22 16 37 H 0.06 1.32 7.74 -51.93 -0.40 0.92 16 38 H 0.39 10.87 6.42 45.56 0.29 11.17 16 39 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 40 H 0.06 1.32 7.07 -51.93 -0.37 0.95 16 41 H 0.07 1.77 8.14 -51.93 -0.42 1.34 16 42 H 0.12 1.92 7.35 -52.49 -0.39 1.54 16 LS Contribution 339.08 15.07 5.11 5.11 Total: -1.00 -28.15 339.08 -10.13 -38.28 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: -6.16 Total: 13.05 kcal Atomic # 6 Polarization: -17.68 SS G_CDS: -2.70 Total: -20.39 kcal Atomic # 7 Polarization: -34.28 SS G_CDS: -0.88 Total: -35.16 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: -0.48 Total: -16.26 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -28.15 -10.13 -38.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327830158.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.344 kcal (2) G-P(sol) polarization free energy of solvation -28.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds