Wall clock time and date at job start Mon Mar 30 2020 02:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50698 * 109.47286 * 2 1 4 4 C 1.38399 * 119.84442 * 265.01835 * 3 2 1 5 5 C 1.37917 * 120.15177 * 179.76473 * 4 3 2 6 6 C 1.39667 * 119.84081 * 0.44310 * 5 4 3 7 7 C 1.47735 * 120.14443 * 179.81122 * 6 5 4 8 8 O 1.21593 * 119.99544 * 189.15295 * 7 6 5 9 9 N 1.34770 * 120.00117 * 9.15742 * 7 6 5 10 10 C 1.36874 * 120.00129 * 187.49050 * 9 7 6 11 11 H 1.08004 * 119.99615 * 45.88251 * 10 9 7 12 12 C 1.39044 * 120.00119 * 225.88866 * 10 9 7 13 13 N 1.31364 * 120.00248 * 31.33210 * 12 10 9 14 14 Si 1.86801 * 119.99828 * 211.33416 * 12 10 9 15 15 H 1.48501 * 109.47262 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.47043 * 120.00266 * 14 12 10 17 17 H 1.48502 * 109.47100 * 239.99736 * 14 12 10 18 18 C 1.46503 * 120.00092 * 7.48553 * 9 7 6 19 19 C 1.52999 * 109.47315 * 271.58484 * 18 9 7 20 20 C 1.39627 * 119.70502 * 359.53744 * 6 5 4 21 21 C 1.37952 * 119.83957 * 0.25277 * 20 6 5 22 22 C 1.50707 * 119.92300 * 180.02562 * 21 20 6 23 23 C 1.53000 * 109.47006 * 265.00151 * 22 21 20 24 24 H 1.08999 * 109.46744 * 60.00450 * 1 2 3 25 25 H 1.08993 * 109.47278 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47152 * 300.00637 * 1 2 3 27 27 H 1.09000 * 109.47152 * 239.99363 * 2 1 3 28 28 H 1.09007 * 109.46674 * 119.99811 * 2 1 3 29 29 H 1.07998 * 119.92747 * 0.02562 * 4 3 2 30 30 H 1.07999 * 120.07813 * 180.23678 * 5 4 3 31 31 H 0.96992 * 120.00524 * 179.97438 * 13 12 10 32 32 H 1.08999 * 109.47141 * 151.58285 * 18 9 7 33 33 H 1.09001 * 109.47104 * 31.58395 * 18 9 7 34 34 H 1.09003 * 109.46894 * 314.60662 * 19 18 9 35 35 H 1.08994 * 109.47358 * 74.60884 * 19 18 9 36 36 H 1.08998 * 109.47255 * 194.61231 * 19 18 9 37 37 H 1.07996 * 120.07836 * 180.22760 * 20 6 5 38 38 H 1.09004 * 109.46918 * 24.99467 * 22 21 20 39 39 H 1.09000 * 109.47502 * 144.99493 * 22 21 20 40 40 H 1.08994 * 109.46796 * 299.99299 * 23 22 21 41 41 H 1.09002 * 109.47387 * 59.99885 * 23 22 21 42 42 H 1.09004 * 109.47023 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3603 2.0354 -1.1959 5 6 2.8161 3.3370 -1.2037 6 6 2.9552 4.0319 -0.0002 7 6 3.4467 5.4251 -0.0004 8 8 3.7253 5.9716 1.0495 9 7 3.5863 6.0902 -1.1642 10 6 4.1838 7.3216 -1.1813 11 1 5.1033 7.4832 -0.6382 12 6 3.6069 8.3643 -1.8976 13 7 2.3016 8.4255 -2.0325 14 14 4.6880 9.6784 -2.6683 15 1 6.1131 9.3825 -2.3736 16 1 4.4793 9.6914 -4.1385 17 1 4.3309 11.0056 -2.1059 18 6 3.0987 5.4953 -2.4110 19 6 4.1998 4.6308 -3.0284 20 6 2.6221 3.4059 1.2027 21 6 2.1633 2.1049 1.1954 22 6 1.8028 1.4277 2.4925 23 6 2.9996 0.6175 2.9947 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8901 29 1 2.2551 1.4959 -2.1256 30 1 3.0680 3.8167 -2.1380 31 1 1.8991 9.1530 -2.5318 32 1 2.8244 6.2869 -3.1083 33 1 2.2258 4.8770 -2.2015 34 1 5.1457 5.1717 -2.9992 35 1 4.2938 3.7037 -2.4630 36 1 3.9443 4.4012 -4.0628 37 1 2.7239 3.9388 2.1365 38 1 1.5372 2.1810 3.2342 39 1 0.9551 0.7617 2.3314 40 1 3.2652 -0.1358 2.2531 41 1 3.8473 1.2835 3.1559 42 1 2.7390 0.1280 3.9331 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337209483.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:41 Heat of formation + Delta-G solvation = 33.350515 kcal Electronic energy + Delta-G solvation = -21794.913918 eV Core-core repulsion = 18741.886337 eV Total energy + Delta-G solvation = -3053.027582 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.04180 -38.13011 -35.46932 -34.33479 -33.21497 -32.28014 -30.22879 -29.38651 -28.52847 -25.39283 -24.19260 -23.22650 -22.41577 -21.28747 -20.74521 -19.06896 -16.89251 -16.18002 -15.98385 -15.60216 -15.04067 -14.25523 -14.21975 -13.88650 -13.74369 -13.52244 -13.31795 -13.20289 -12.87805 -12.61656 -12.36042 -12.02116 -11.88759 -11.69185 -11.30749 -11.24019 -11.22231 -11.09196 -10.96842 -10.90014 -10.55231 -10.45530 -10.36976 -10.22000 -9.59584 -8.91207 -8.36748 -8.32123 -8.01624 -7.43599 -6.40939 -3.99521 1.51038 1.84045 3.13859 3.25382 3.32018 3.76410 4.12776 4.56630 4.80856 4.87962 4.95556 5.00897 5.10287 5.13848 5.37086 5.41223 5.48232 5.50915 5.58198 5.65358 5.71812 5.83836 5.84857 5.87743 5.93225 5.95858 6.11316 6.14013 6.17285 6.23250 6.29903 6.31398 6.49396 6.52706 6.69451 6.86000 6.97342 6.99625 7.04276 7.43393 7.55212 8.32648 8.51843 9.20750 9.34319 10.05320 10.62858 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.029298 B = 0.004778 C = 0.004420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.454823 B = 5859.329660 C = 6333.240629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.081 4.081 4 C -0.131 4.131 5 C -0.176 4.176 6 C -0.105 4.105 7 C 0.494 3.506 8 O -0.575 6.575 9 N -0.428 5.428 10 C -0.325 4.325 11 H 0.088 0.912 12 C 0.052 3.948 13 N -0.842 5.842 14 Si 0.904 3.096 15 H -0.265 1.265 16 H -0.279 1.279 17 H -0.281 1.281 18 C 0.087 3.913 19 C -0.202 4.202 20 C -0.070 4.070 21 C -0.096 4.096 22 C -0.084 4.084 23 C -0.147 4.147 24 H 0.056 0.944 25 H 0.053 0.947 26 H 0.056 0.944 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.117 0.883 30 H 0.206 0.794 31 H 0.268 0.732 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.059 0.941 37 H 0.126 0.874 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.054 0.946 41 H 0.057 0.943 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.317 -15.772 -0.523 15.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.123 4.123 3 C -0.081 4.081 4 C -0.149 4.149 5 C -0.193 4.193 6 C -0.109 4.109 7 C 0.284 3.716 8 O -0.459 6.459 9 N -0.146 5.146 10 C -0.452 4.452 11 H 0.106 0.894 12 C -0.156 4.156 13 N -0.476 5.476 14 Si 0.730 3.270 15 H -0.189 1.189 16 H -0.204 1.204 17 H -0.207 1.207 18 C -0.037 4.037 19 C -0.259 4.259 20 C -0.090 4.090 21 C -0.096 4.096 22 C -0.121 4.121 23 C -0.204 4.204 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.135 0.865 30 H 0.222 0.778 31 H 0.078 0.922 32 H 0.103 0.897 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.078 0.922 37 H 0.144 0.856 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.329 -15.338 -0.100 15.514 hybrid contribution 0.289 0.763 -0.475 0.944 sum -2.041 -14.575 -0.575 14.728 Atomic orbital electron populations 1.21761 0.95079 1.01189 1.02390 1.20568 0.95966 0.93289 1.02433 1.19769 0.99719 0.95696 0.92966 1.20963 1.01621 0.95397 0.96890 1.24352 0.97494 0.94991 1.02468 1.20412 1.01253 0.95546 0.93642 1.18431 0.82555 0.85747 0.84864 1.90590 1.54687 1.69706 1.30927 1.43285 1.51737 1.16352 1.03217 1.19256 1.05865 0.86263 1.33827 0.89400 1.25460 0.94828 0.97404 0.97951 1.70171 1.09536 1.32001 1.35898 0.86256 0.81327 0.80480 0.78942 1.18902 1.20436 1.20691 1.22013 0.95237 0.97262 0.89212 1.22803 1.01679 1.01159 1.00275 1.21114 0.96377 0.93433 0.98045 1.19541 1.01552 0.94173 0.94380 1.20541 0.98309 0.99070 0.94217 1.21762 0.98322 0.99961 1.00332 0.92517 0.92797 0.92459 0.91493 0.90997 0.86541 0.77845 0.92201 0.89743 0.90465 0.90977 0.90377 0.92246 0.85588 0.91263 0.91042 0.92650 0.92416 0.92770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.72 37.16 0.36 -1.10 16 2 C -0.09 -0.93 5.37 -27.88 -0.15 -1.08 16 3 C -0.08 -1.16 5.14 -104.52 -0.54 -1.70 16 4 C -0.13 -1.97 9.66 -39.64 -0.38 -2.36 16 5 C -0.18 -3.16 6.25 -39.17 -0.24 -3.41 16 6 C -0.11 -2.26 5.76 -104.96 -0.61 -2.86 16 7 C 0.49 13.00 7.55 -12.38 -0.09 12.91 16 8 O -0.58 -17.23 16.37 5.28 0.09 -17.14 16 9 N -0.43 -11.04 2.45 -132.16 -0.32 -11.37 16 10 C -0.32 -9.09 8.63 -15.00 -0.13 -9.22 16 11 H 0.09 2.57 8.00 -52.48 -0.42 2.15 16 12 C 0.05 1.39 4.58 -17.45 -0.08 1.31 16 13 N -0.84 -23.24 12.83 55.50 0.71 -22.53 16 14 Si 0.90 20.19 29.65 -169.99 -5.04 15.15 16 15 H -0.26 -5.86 7.11 56.52 0.40 -5.46 16 16 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 17 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 18 C 0.09 1.83 5.26 -4.04 -0.02 1.81 16 19 C -0.20 -3.41 9.16 37.16 0.34 -3.07 16 20 C -0.07 -1.37 9.22 -39.17 -0.36 -1.73 16 21 C -0.10 -1.51 5.13 -104.68 -0.54 -2.05 16 22 C -0.08 -1.05 5.38 -27.88 -0.15 -1.20 16 23 C -0.15 -1.62 9.72 37.16 0.36 -1.26 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.59 6.79 -51.93 -0.35 0.24 16 27 H 0.07 0.66 8.05 -51.93 -0.42 0.24 16 28 H 0.07 0.72 5.60 -51.92 -0.29 0.43 16 29 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 30 H 0.21 3.48 1.34 -108.78 -0.15 3.34 16 31 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 32 H 0.08 1.92 6.57 -51.93 -0.34 1.58 16 33 H 0.08 1.54 5.12 -51.93 -0.27 1.28 16 34 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.08 1.25 5.11 -51.93 -0.27 0.98 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.13 2.54 7.68 -52.49 -0.40 2.14 16 38 H 0.07 0.86 8.05 -51.93 -0.42 0.44 16 39 H 0.07 0.78 5.59 -51.93 -0.29 0.49 16 40 H 0.05 0.58 6.79 -51.93 -0.35 0.23 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 329.07 15.07 4.96 4.96 Total: -1.00 -32.16 329.07 -7.89 -40.06 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -6.06 Total: 5.87 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: -2.23 Total: -15.00 kcal Atomic # 7 Polarization: -34.28 SS G_CDS: 0.39 Total: -33.90 kcal Atomic # 8 Polarization: -17.23 SS G_CDS: 0.09 Total: -17.14 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.04 Total: 15.15 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.16 -7.89 -40.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337209483.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.406 kcal (2) G-P(sol) polarization free energy of solvation -32.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds